Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1755746477237764969.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8782_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:17:46,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:17:46,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:17:46,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:17:46,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:17:46,828 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:17:46,829 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:17:46,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:17:46,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:17:46,829 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:17:46,830 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:17:46,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 384 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 02:17:46,840] [main] java.version = 1.8.0_342 [testng] 02:17:46,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:17:46,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:46,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-17-46.log] [testng] 02:17:46,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 02:17:46,911] [main] testng.directory = /data [testng] [2024-05-10 02:17:46,912] [main] testng.configDirectory = /config [testng] [2024-05-10 02:17:46,968] [main] testng.multiplier = 1.0 [testng] [2024-05-10 02:17:46,968] [main] testng.in-memory = false [testng] [2024-05-10 02:17:46,968] [main] testng.allow-missing = false [testng] [2024-05-10 02:17:46,968] [main] user.language = en [testng] [2024-05-10 02:17:46,968] [main] user.country = ${user.country} [testng] [2024-05-10 02:17:46,968] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 02:17:53,866] [main] ---------------------------------------- [testng] [2024-05-10 02:17:53,866] [main] Total files: 67 [testng] [2024-05-10 02:17:53,867] [main] Scan time: 6.898 s (102 ms/file) [testng] [2024-05-10 02:17:53,867] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 02:18:16,213] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 02:18:16,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:16,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-18-16.log] [testng] 02:18:16,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@370089ed - End of configuration. [testng] [2024-05-10 02:18:16,293] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims: [testng] 02:18:16,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:16,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-18-16.log] [testng] 02:18:16,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f215f69 - End of configuration. [testng] [2024-05-10 02:18:16,328] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:18:16,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:16,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-18-16.log] [testng] 02:18:16,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0dbec2 - End of configuration. [testng] [2024-05-10 02:18:16,355] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims: [testng] 02:18:16,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:16,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-18-16.log] [testng] 02:18:16,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b4ce3b0 - End of configuration. [testng] [2024-05-10 02:18:16,380] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:18:16,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:16,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-18-16.log] [testng] 02:18:16,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d9fc1d9 - End of configuration. [testng] [2024-05-10 02:18:16,464] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: [testng] 02:18:16,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:16,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-18-16.log] [testng] 02:18:16,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@469b1056 - End of configuration. [testng] [2024-05-10 02:18:16,513] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims: [testng] 02:18:16,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:16,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-18-16.log] [testng] 02:18:16,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737c12e3 - End of configuration. [testng] [2024-05-10 02:18:16,528] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 02:18:16,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:16,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-18-16.log] [testng] 02:18:16,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff2d2b7 - End of configuration. [testng] [2024-05-10 02:18:16,543] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims: [testng] 02:18:16,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:16,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-18-16.log] [testng] 02:18:16,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5ee04a - End of configuration. [testng] [2024-05-10 02:18:16,623] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:18:16,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:16,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-18-16.log] [testng] 02:18:16,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f1a1b2 - End of configuration. [testng] [2024-05-10 02:18:16,647] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 02:18:16,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:16,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-18-16.log] [testng] 02:18:16,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6277c11a - End of configuration. [testng] [2024-05-10 02:18:16,683] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 02:18:16,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:16,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-18-16.log] [testng] 02:18:16,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@692ef69f - End of configuration. [testng] [2024-05-10 02:18:18,922] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0012.ims: [testng] [2024-05-10 02:18:18,933] [pool-1-thread-8] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-05-10 02:18:18,967] [pool-1-thread-11] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] [2024-05-10 02:18:19,000] [pool-1-thread-10] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims: [testng] [2024-05-10 02:18:19,024] [pool-1-thread-12] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] [2024-05-10 02:18:19,049] [pool-1-thread-7] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: [testng] [2024-05-10 02:18:19,136] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0010.ims: [testng] [2024-05-10 02:18:19,154] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0006.ims: [testng] [2024-05-10 02:18:19,385] [pool-1-thread-1] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF_IMS3.ims: [testng] [2024-05-10 02:18:19,531] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0014.ims: [testng] [2024-05-10 02:18:19,547] [pool-1-thread-6] Initializing /data/qa-4898/o383_1_457_CS_r1.ims: [testng] [2024-05-10 02:18:19,989] [pool-1-thread-3] Initializing /data/public/eliana/retina_large.ims: [testng] [2024-05-10 02:18:20,423] [pool-1-thread-2] Initializing /data/jason/imaris_5_5_demoimages/retina.ims: [testng] [2024-05-10 02:18:20,456] [pool-1-thread-4] Initializing /data/public/eliana/2016-07-26_17.11.03_Sample Prefix_5P298C2_Protocol.ims: BUILD SUCCESSFUL Total time: 1 minute 43 seconds Finished: SUCCESS