Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5406217288135284767.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8792_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:25:50,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:25:50,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:25:50,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:25:50,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:25:50,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:25:50,386 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:25:50,387 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:25:50,388 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:25:50,388 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:25:50,390 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:25:50,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 751 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 02:25:50,409] [main] java.version = 1.8.0_342 [testng] 02:25:50,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:25:50,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:50,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-25-50.log] [testng] 02:25:50,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 02:25:50,612] [main] testng.directory = /data [testng] [2024-05-10 02:25:50,613] [main] testng.configDirectory = /config [testng] [2024-05-10 02:25:50,714] [main] testng.multiplier = 1.0 [testng] [2024-05-10 02:25:50,714] [main] testng.in-memory = false [testng] [2024-05-10 02:25:50,714] [main] testng.allow-missing = false [testng] [2024-05-10 02:25:50,714] [main] user.language = en [testng] [2024-05-10 02:25:50,715] [main] user.country = ${user.country} [testng] [2024-05-10 02:25:50,715] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 02:25:51,966] [main] ---------------------------------------- [testng] [2024-05-10 02:25:51,966] [main] Total files: 21 [testng] [2024-05-10 02:25:51,966] [main] Scan time: 1.251 s (59 ms/file) [testng] [2024-05-10 02:25:51,966] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 02:25:53,596] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 02:25:53,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:53,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-25-53.log] [testng] 02:25:53,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c00461e - End of configuration. [testng] [2024-05-10 02:25:53,654] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 02:25:53,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:53,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-25-53.log] [testng] 02:25:53,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@98f7926 - End of configuration. [testng] [2024-05-10 02:25:53,664] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 02:25:53,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:53,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-25-53.log] [testng] 02:25:53,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647bbbd - End of configuration. [testng] [2024-05-10 02:25:53,673] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 02:25:53,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:53,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-25-53.log] [testng] 02:25:53,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7205bdd5 - End of configuration. [testng] [2024-05-10 02:25:53,683] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 02:25:53,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:53,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-25-53.log] [testng] 02:25:53,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5b85ef - End of configuration. [testng] [2024-05-10 02:25:53,690] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 02:25:53,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:53,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-25-53.log] [testng] 02:25:53,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e5d1da - End of configuration. [testng] [2024-05-10 02:25:53,699] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:25:53,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:53,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-25-53.log] [testng] 02:25:53,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7b582 - End of configuration. [testng] [2024-05-10 02:25:53,711] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 02:25:53,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:53,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-25-53.log] [testng] 02:25:53,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7552f5f7 - End of configuration. [testng] [2024-05-10 02:25:53,749] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 02:25:53,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:53,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-25-53.log] [testng] 02:25:53,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e882c94 - End of configuration. [testng] [2024-05-10 02:25:53,758] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 02:25:53,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:53,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-25-53.log] [testng] 02:25:53,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59838a9a - End of configuration. [testng] [2024-05-10 02:25:53,771] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 02:25:53,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:53,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-25-53.log] [testng] 02:25:53,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ee1e4c - End of configuration. [testng] [2024-05-10 02:25:53,783] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 02:25:53,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:53,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:53,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-25-53.log] [testng] 02:25:53,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788fc68 - End of configuration. [testng] [2024-05-10 02:25:55,397] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2024-05-10 02:25:55,407] [pool-1-thread-8] Initializing /data/samples/spinfox.png: [testng] [2024-05-10 02:25:55,420] [pool-1-thread-3] Initializing /data/samples/william_wong01.png: [testng] [2024-05-10 02:25:55,430] [pool-1-thread-2] Initializing /data/samples/william_wong05.png: [testng] [2024-05-10 02:25:55,441] [pool-1-thread-12] Initializing /data/colin/test.sfstdge.png: [testng] [2024-05-10 02:25:55,445] [pool-1-thread-5] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-05-10 02:25:55,459] [pool-1-thread-11] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-05-10 02:25:55,475] [pool-1-thread-1] Initializing /data/samples/chompy2.png: [testng] [2024-05-10 02:25:55,487] [pool-1-thread-10] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS