Started by upstream project "BIOFORMATS-test-repo" build number 59
originally caused by:
Started by upstream project "Trigger" build number 66
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins6133484058917734880.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_8823_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:54:55,896 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:54:55,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:54:55,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:54:55,900 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:54:55,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:54:55,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:54:55,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:54:55,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:54:55,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:54:55,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:54:55,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:54:55,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:54:56,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:54:56,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:54:56,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:54:56,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:54:56,287 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:54:56,288 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:54:56,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:54:56,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:54:56,289 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:54:56,290 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:54:56,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 388 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-10 02:54:56,303] [main] java.version = 1.8.0_342
[testng] 02:54:56,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:54:56,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:56,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-54-56.log]
[testng] 02:54:56,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-10 02:54:56,374] [main] testng.directory = /data
[testng] [2024-05-10 02:54:56,375] [main] testng.configDirectory = /config
[testng] [2024-05-10 02:54:56,394] [main] testng.multiplier = 1.0
[testng] [2024-05-10 02:54:56,394] [main] testng.in-memory = false
[testng] [2024-05-10 02:54:56,394] [main] testng.allow-missing = false
[testng] [2024-05-10 02:54:56,394] [main] user.language = en
[testng] [2024-05-10 02:54:56,394] [main] user.country = ${user.country}
[testng] [2024-05-10 02:54:56,394] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-10 02:54:57,662] [main] ----------------------------------------
[testng] [2024-05-10 02:54:57,662] [main] Total files: 22
[testng] [2024-05-10 02:54:57,662] [main] Scan time: 1.268 s (57 ms/file)
[testng] [2024-05-10 02:54:57,662] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-10 02:55:05,485] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw:
[testng] 02:55:05,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:55:05,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-55-05.log]
[testng] 02:55:05,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f8c1cdb - End of configuration.
[testng] [2024-05-10 02:55:05,561] [pool-1-thread-12] Initializing /data/xiuwen/head2.seq:
[testng] 02:55:05,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:55:05,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-55-05.log]
[testng] 02:55:05,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650d8daf - End of configuration.
[testng] [2024-05-10 02:55:05,685] [pool-1-thread-11] Initializing /data/converted/clown.ipw:
[testng] 02:55:05,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:55:05,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-55-05.log]
[testng] 02:55:05,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58366134 - End of configuration.
[testng] [2024-05-10 02:55:05,711] [pool-1-thread-10] Initializing /data/converted/dub01.ipw:
[testng] 02:55:05,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:55:05,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-55-05.log]
[testng] 02:55:05,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19c0590e - End of configuration.
[testng] [2024-05-10 02:55:05,789] [pool-1-thread-9] Initializing /data/converted/clown.seq:
[testng] 02:55:05,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:55:05,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-55-05.log]
[testng] 02:55:05,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ba1c41 - End of configuration.
[testng] [2024-05-10 02:55:05,810] [pool-1-thread-8] Initializing /data/converted/clown8c.seq:
[testng] 02:55:05,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:55:05,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-55-05.log]
[testng] 02:55:05,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c634f9 - End of configuration.
[testng] [2024-05-10 02:55:05,831] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips:
[testng] 02:55:05,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:55:05,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-55-05.log]
[testng] 02:55:05,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684830f8 - End of configuration.
[testng] [2024-05-10 02:55:05,857] [pool-1-thread-6] Initializing /data/converted/mitosis-test.tif:
[testng] 02:55:05,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:55:05,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:05,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-55-05.log]
[testng] 02:55:05,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249d757b - End of configuration.
[testng] [2024-05-10 02:55:06,004] [pool-1-thread-5] Initializing /data/converted/clown.tif:
[testng] 02:55:06,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:55:06,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:06,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-55-06.log]
[testng] 02:55:06,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cfd00f7 - End of configuration.
[testng] [2024-05-10 02:55:06,025] [pool-1-thread-4] Initializing /data/converted/dub01.seq:
[testng] 02:55:06,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:55:06,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:06,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-55-06.log]
[testng] 02:55:06,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174a9031 - End of configuration.
[testng] [2024-05-10 02:55:06,122] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ:
[testng] 02:55:06,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:55:06,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:06,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-55-06.log]
[testng] 02:55:06,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d84f45 - End of configuration.
[testng] [2024-05-10 02:55:06,158] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] 02:55:06,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:55:06,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:06,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-55-06.log]
[testng] 02:55:06,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@425bde39 - End of configuration.
[testng] [2024-05-10 02:55:09,104] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-05-10 02:55:09,144] [pool-1-thread-8] Initializing /data/converted/dub01.pic:
[testng] [2024-05-10 02:55:09,197] [pool-1-thread-11] Initializing /data/converted/clown8c.tif:
[testng] [2024-05-10 02:55:09,225] [pool-1-thread-1] Initializing /data/samples/PROBE.TIF:
[testng] [2024-05-10 02:55:09,246] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-05-10 02:55:09,286] [pool-1-thread-10] Initializing /data/samples/FLDUAL.TIF:
[testng] [2024-05-10 02:55:09,391] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw:
[testng] [2024-05-10 02:55:09,444] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] [2024-05-10 02:55:09,508] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 33 seconds
Finished: SUCCESS