Started by upstream project "BIOFORMATS-test-repo" build number 60 originally caused by: Started by upstream project "Trigger" build number 67 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4180183540536156329.sh + '[' perkinelmer-densitometer = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8897_merge_ci -v /uod/idr/repos/curated/perkinelmer-densitometer:/data -v /uod/idr-scratch/merge-ci/curated/perkinelmer-densitometer:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:43:49,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:43:49,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:43:49,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:43:49,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:43:49,652 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:43:49,652 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:43:49,652 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:43:49,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:43:49,653 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:43:49,654 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:43:49,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 608 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-11 01:43:49,694] [main] java.version = 11.0.16 [testng] 01:43:49,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:43:49,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:49,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-11_01-43-49.log] [testng] 01:43:49,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-11 01:43:49,910] [main] testng.directory = /data [testng] [2024-05-11 01:43:49,911] [main] testng.configDirectory = /config [testng] [2024-05-11 01:43:49,949] [main] testng.multiplier = 1.0 [testng] [2024-05-11 01:43:49,951] [main] testng.in-memory = false [testng] [2024-05-11 01:43:49,951] [main] testng.allow-missing = false [testng] [2024-05-11 01:43:49,951] [main] user.language = en [testng] [2024-05-11 01:43:49,951] [main] user.country = ${user.country} [testng] [2024-05-11 01:43:49,951] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-11 01:43:52,103] [main] ---------------------------------------- [testng] [2024-05-11 01:43:52,103] [main] Total files: 19 [testng] [2024-05-11 01:43:52,103] [main] Scan time: 2.152 s (113 ms/file) [testng] [2024-05-11 01:43:52,104] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-11 01:43:54,491] [pool-1-thread-1] Initializing /data/ascb/DP1190.hdr: [testng] 01:43:54,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:43:54,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-11_01-43-54.log] [testng] 01:43:54,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@716433cb - End of configuration. [testng] [2024-05-11 01:43:54,526] [pool-1-thread-11] Initializing /data/ascb/U8092001.hdr: [testng] 01:43:54,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:43:54,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-11_01-43-54.log] [testng] 01:43:54,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eaed20 - End of configuration. [testng] [2024-05-11 01:43:54,553] [pool-1-thread-10] Initializing /data/ascb/PT1173A001.hdr: [testng] 01:43:54,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:43:54,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-11_01-43-54.log] [testng] 01:43:54,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46bbdd71 - End of configuration. [testng] [2024-05-11 01:43:54,626] [pool-1-thread-9] Initializing /data/ascb/PT1173A001.tif: [testng] 01:43:54,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:43:54,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-11_01-43-54.log] [testng] 01:43:54,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96a38ef - End of configuration. [testng] [2024-05-11 01:43:54,787] [pool-1-thread-8] Initializing /data/ascb/DP1190.tif: [testng] 01:43:54,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:43:54,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-11_01-43-54.log] [testng] 01:43:54,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65a1780c - End of configuration. [testng] [2024-05-11 01:43:54,884] [pool-1-thread-7] Initializing /data/ascb/3/PT118001.hdr: [testng] 01:43:54,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:43:54,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-11_01-43-54.log] [testng] 01:43:54,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44478d5b - End of configuration. [testng] [2024-05-11 01:43:54,910] [pool-1-thread-6] Initializing /data/ascb/2/V8701001.hdr: [testng] 01:43:54,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:43:54,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-11_01-43-54.log] [testng] 01:43:54,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47520668 - End of configuration. [testng] [2024-05-11 01:43:54,931] [pool-1-thread-5] Initializing /data/ascb/Y7616001.tif: [testng] 01:43:54,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:43:54,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-11_01-43-54.log] [testng] 01:43:54,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f418ee1 - End of configuration. [testng] [2024-05-11 01:43:55,151] [pool-1-thread-4] Initializing /data/ascb/1/T8710001.hdr: [testng] 01:43:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:43:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:55,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-11_01-43-55.log] [testng] 01:43:55,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ea59d8 - End of configuration. [testng] [2024-05-11 01:43:55,173] [pool-1-thread-3] Initializing /data/ascb/U8092001.tif: [testng] 01:43:55,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:43:55,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:55,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-11_01-43-55.log] [testng] 01:43:55,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cfc956b - End of configuration. [testng] [2024-05-11 01:43:55,262] [pool-1-thread-2] Initializing /data/ascb/Y7616001.hdr: [testng] 01:43:55,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:43:55,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:55,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-11_01-43-55.log] [testng] 01:43:55,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1295e932 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS