Started by upstream project "<a href='/jenkins/job/BIOFORMATS-test-repo/' class='jenkins-table__link model-link model-link--float'>BIOFORMATS-test-repo</a>" build number <a href='/jenkins/job/BIOFORMATS-test-repo/6' class='jenkins-table__link model-link model-link--float'>6</a>
originally caused by:
 Started by upstream project "<a href='/jenkins/job/Trigger/' class='jenkins-table__link model-link model-link--float'>Trigger</a>" build number <a href='/jenkins/job/Trigger/9' class='jenkins-table__link model-link model-link--float'>9</a>
 originally caused by:
  Started by user <a href='/jenkins/user/devspace' class='jenkins-table__link model-link model-link--float'>devspace</a>
Running as SYSTEM
Building remotely on <a href='/jenkins/computer/docker' class='jenkins-table__link model-link model-link--float'>docker</a> (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8733659145402990203.sh
+ '[' analyze = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_903_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 10:53:46,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 10:53:46,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 10:53:46,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 10:53:46,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 10:53:46,105 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 10:53:46,105 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 10:53:46,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 10:53:46,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 10:53:46,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 10:53:46,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 10:53:46,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 10:53:46,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 10:53:46,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 10:53:46,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 10:53:46,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 10:53:46,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 10:53:46,296 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 10:53:46,296 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 10:53:46,296 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 10:53:46,296 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 10:53:46,296 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 10:53:46,297 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 10:53:46,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-20 10:53:46,306] [main] java.version = 17.0.2
   [testng] 10:53:46,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 10:53:46,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:53:46,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_10-53-46.log]
   [testng] 10:53:46,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-03-20 10:53:46,352] [main] testng.directory = /data
   [testng] [2024-03-20 10:53:46,352] [main] testng.configDirectory = /config
   [testng] [2024-03-20 10:53:46,360] [main] testng.multiplier = 1.0
   [testng] [2024-03-20 10:53:46,361] [main] testng.in-memory = false
   [testng] [2024-03-20 10:53:46,361] [main] testng.allow-missing = false
   [testng] [2024-03-20 10:53:46,361] [main] user.language = en
   [testng] [2024-03-20 10:53:46,361] [main] user.country = ${user.country}
   [testng] [2024-03-20 10:53:46,361] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-20 10:53:56,432] [main] ----------------------------------------
   [testng] [2024-03-20 10:53:56,432] [main] Total files: 21
   [testng] [2024-03-20 10:53:56,433] [main] Scan time: 10.07 s (479 ms/file)
   [testng] [2024-03-20 10:53:56,433] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-20 10:54:03,711] [pool-1-thread-1] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr: 
   [testng] 10:54:03,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 10:54:03,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:03,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_10-54-03.log]
   [testng] 10:54:03,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566160bd - End of configuration.
   [testng] [2024-03-20 10:54:03,904] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr: 
   [testng] 10:54:03,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 10:54:03,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:03,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_10-54-03.log]
   [testng] 10:54:03,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e4c818d - End of configuration.
   [testng] [2024-03-20 10:54:04,259] [pool-1-thread-11] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr: 
   [testng] 10:54:04,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 10:54:04,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:04,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_10-54-04.log]
   [testng] 10:54:04,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2082a6ed - End of configuration.
   [testng] [2024-03-20 10:54:04,432] [pool-1-thread-10] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr: 
   [testng] 10:54:04,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 10:54:04,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:04,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_10-54-04.log]
   [testng] 10:54:04,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration.
   [testng] [2024-03-20 10:54:04,558] [pool-1-thread-9] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr: 
   [testng] 10:54:04,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 10:54:04,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:04,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_10-54-04.log]
   [testng] 10:54:04,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration.
   [testng] [2024-03-20 10:54:04,719] [pool-1-thread-8] Initializing /data/frans/ch2bet.hdr: 
   [testng] 10:54:04,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 10:54:04,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:04,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_10-54-04.log]
   [testng] 10:54:04,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e942491 - End of configuration.
   [testng] [2024-03-20 10:54:04,962] [pool-1-thread-7] Initializing /data/frans/brodmann.hdr: 
   [testng] 10:54:04,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 10:54:04,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:04,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_10-54-04.log]
   [testng] 10:54:04,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6846bddf - End of configuration.
   [testng] [2024-03-20 10:54:05,144] [pool-1-thread-6] Initializing /data/frans/CT_FOOT.hdr: 
   [testng] 10:54:05,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 10:54:05,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:05,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_10-54-05.log]
   [testng] 10:54:05,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45797649 - End of configuration.
   [testng] [2024-03-20 10:54:05,335] [pool-1-thread-5] Initializing /data/frans/CT_CRANI.hdr: 
   [testng] 10:54:05,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 10:54:05,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:05,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_10-54-05.log]
   [testng] 10:54:05,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f2c1ec - End of configuration.
   [testng] [2024-03-20 10:54:05,597] [pool-1-thread-4] Initializing /data/frans/betmask.hdr: 
   [testng] 10:54:05,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 10:54:05,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:05,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_10-54-05.log]
   [testng] 10:54:05,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df9a0a6 - End of configuration.
   [testng] [2024-03-20 10:54:05,683] [pool-1-thread-3] Initializing /data/frans/m000-MR_CHEST.gif: 
   [testng] 10:54:05,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 10:54:05,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:05,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_10-54-05.log]
   [testng] 10:54:05,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6b1c4 - End of configuration.
   [testng] [2024-03-20 10:54:05,728] [pool-1-thread-2] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr: 
   [testng] 10:54:05,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 10:54:05,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 10:54:05,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_10-54-05.log]
   [testng] 10:54:05,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37108b4a - End of configuration.
   [testng] [2024-03-20 10:54:07,335] [pool-1-thread-3] Initializing /data/frans/CT_APERT.hdr: 
   [testng] [2024-03-20 10:54:08,232] [pool-1-thread-10] Initializing /data/frans/CT_KNEE.hdr: 
   [testng] [2024-03-20 10:54:08,303] [pool-1-thread-5] Initializing /data/frans/ch2.hdr: 
   [testng] [2024-03-20 10:54:08,371] [pool-1-thread-2] Initializing /data/frans/aal.hdr: 
   [testng] [2024-03-20 10:54:08,513] [pool-1-thread-4] Initializing /data/frans/MR_CHEST.hdr: 
   [testng] [2024-03-20 10:54:08,748] [pool-1-thread-11] Initializing /data/frans/CT_CHEST.hdr: 
   [testng] [2024-03-20 10:54:08,927] [pool-1-thread-9] Initializing /data/frans/CT_WHOLE.hdr: 
   [testng] [2024-03-20 10:54:09,107] [pool-1-thread-12] Initializing /data/frans/MR_SEGBRAIN.hdr: 
   [testng] [2024-03-20 10:54:09,298] [pool-1-thread-8] Initializing /data/frans/CT_HAND.hdr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 33 seconds
Finished: SUCCESS