Started by upstream project "BIOFORMATS-test-repo" build number 61
originally caused by:
Started by upstream project "Trigger" build number 68
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3964161723378515399.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9031_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:27:07,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:27:07,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:27:07,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:07,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:07,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:27:07,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:27:07,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:27:07,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:07,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:07,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:27:07,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:27:07,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:27:07,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:27:07,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:27:07,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:27:07,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:27:07,211 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:27:07,211 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:27:07,211 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:27:07,211 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:27:07,211 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:27:07,212 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:27:07,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-12 01:27:07,221] [main] java.version = 17.0.2
[testng] 01:27:07,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:27:07,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:07,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-12_01-27-07.log]
[testng] 01:27:07,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-12 01:27:07,266] [main] testng.directory = /data
[testng] [2024-05-12 01:27:07,266] [main] testng.configDirectory = /config
[testng] [2024-05-12 01:27:07,275] [main] testng.multiplier = 1.0
[testng] [2024-05-12 01:27:07,276] [main] testng.in-memory = false
[testng] [2024-05-12 01:27:07,276] [main] testng.allow-missing = false
[testng] [2024-05-12 01:27:07,276] [main] user.language = en
[testng] [2024-05-12 01:27:07,276] [main] user.country = ${user.country}
[testng] [2024-05-12 01:27:07,276] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-12 01:27:07,659] [main] ----------------------------------------
[testng] [2024-05-12 01:27:07,659] [main] Total files: 21
[testng] [2024-05-12 01:27:07,659] [main] Scan time: 0.383 s (18 ms/file)
[testng] [2024-05-12 01:27:07,659] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-12 01:27:08,351] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA:
[testng] 01:27:08,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:27:08,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-12_01-27-08.log]
[testng] 01:27:08,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c61103 - End of configuration.
[testng] [2024-05-12 01:27:08,370] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA:
[testng] 01:27:08,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:27:08,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-12_01-27-08.log]
[testng] 01:27:08,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c855e1 - End of configuration.
[testng] [2024-05-12 01:27:08,425] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA:
[testng] 01:27:08,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:27:08,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-12_01-27-08.log]
[testng] 01:27:08,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295c618f - End of configuration.
[testng] [2024-05-12 01:27:08,438] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:27:08,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:27:08,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-12_01-27-08.log]
[testng] 01:27:08,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f115d20 - End of configuration.
[testng] [2024-05-12 01:27:08,452] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA:
[testng] 01:27:08,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:27:08,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-12_01-27-08.log]
[testng] 01:27:08,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6535a1df - End of configuration.
[testng] [2024-05-12 01:27:08,466] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA:
[testng] 01:27:08,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:27:08,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-12_01-27-08.log]
[testng] 01:27:08,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c94bd5 - End of configuration.
[testng] [2024-05-12 01:27:08,479] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA:
[testng] 01:27:08,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:27:08,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-12_01-27-08.log]
[testng] 01:27:08,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@781dd6f4 - End of configuration.
[testng] [2024-05-12 01:27:08,505] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA:
[testng] 01:27:08,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:27:08,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-12_01-27-08.log]
[testng] 01:27:08,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@130ba2ca - End of configuration.
[testng] [2024-05-12 01:27:08,517] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA:
[testng] 01:27:08,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:27:08,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-12_01-27-08.log]
[testng] 01:27:08,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c2cca5 - End of configuration.
[testng] [2024-05-12 01:27:08,531] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:27:08,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:27:08,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-12_01-27-08.log]
[testng] 01:27:08,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c5e4fd5 - End of configuration.
[testng] [2024-05-12 01:27:08,544] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA:
[testng] 01:27:08,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:27:08,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-12_01-27-08.log]
[testng] 01:27:08,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a63566 - End of configuration.
[testng] [2024-05-12 01:27:08,557] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA:
[testng] 01:27:08,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:27:08,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:08,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-12_01-27-08.log]
[testng] 01:27:08,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@422dc32f - End of configuration.
[testng] [2024-05-12 01:27:10,647] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA:
[testng] [2024-05-12 01:27:10,654] [pool-1-thread-5] Initializing /data/samples/CTC16.TGA:
[testng] [2024-05-12 01:27:10,661] [pool-1-thread-8] Initializing /data/samples/FLAG_B32.TGA:
[testng] [2024-05-12 01:27:10,668] [pool-1-thread-11] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-05-12 01:27:10,676] [pool-1-thread-1] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-05-12 01:27:10,685] [pool-1-thread-12] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-05-12 01:27:10,692] [pool-1-thread-6] Initializing /data/samples/FLAG_T16.TGA:
[testng] [2024-05-12 01:27:10,698] [pool-1-thread-4] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-05-12 01:27:10,935] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS