Started by upstream project "BIOFORMATS-test-repo" build number 6
originally caused by:
 Started by upstream project "Trigger" build number 9
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12975099368906490414.sh
+ '[' imspector = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_912_merge_ci -v /uod/idr/repos/curated/imspector:/data -v /uod/idr-scratch/merge-ci/curated/imspector:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 11:00:13,576 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 11:00:13,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 11:00:13,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:00:13,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:00:13,581 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 11:00:13,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 11:00:13,584 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 4 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 11:00:13,584 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:00:13,585 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:00:13,587 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 11:00:13,587 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 11:00:13,588 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 11:00:13,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 11:00:13,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 11:00:13,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 11:00:13,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 11:00:13,784 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 11:00:13,784 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 11:00:13,784 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 11:00:13,784 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 11:00:13,784 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 11:00:13,785 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 11:00:13,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-20 11:00:13,793] [main] java.version = 17.0.2
   [testng] 11:00:13,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 11:00:13,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:00:13,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_11-00-13.log]
   [testng] 11:00:13,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-03-20 11:00:13,837] [main] testng.directory = /data
   [testng] [2024-03-20 11:00:13,837] [main] testng.configDirectory = /config
   [testng] [2024-03-20 11:00:13,846] [main] testng.multiplier = 1.0
   [testng] [2024-03-20 11:00:13,846] [main] testng.in-memory = false
   [testng] [2024-03-20 11:00:13,846] [main] testng.allow-missing = false
   [testng] [2024-03-20 11:00:13,847] [main] user.language = en
   [testng] [2024-03-20 11:00:13,847] [main] user.country = ${user.country}
   [testng] [2024-03-20 11:00:13,847] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-20 11:03:36,947] [main] ----------------------------------------
   [testng] [2024-03-20 11:03:36,947] [main] Total files: 29
   [testng] [2024-03-20 11:03:36,947] [main] Scan time: 203.1 s (7003 ms/file)
   [testng] [2024-03-20 11:03:36,947] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 28 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-20 11:04:55,745] [pool-1-thread-1] Initializing /data/qa-9468/HPDR10467U-40-VD0191-red-100pc-without-tube.msr: 
   [testng] 11:04:55,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 11:04:55,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:55,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_11-04-55.log]
   [testng] 11:04:55,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@299d6646 - End of configuration.
   [testng] [2024-03-20 11:04:55,929] [pool-1-thread-12] Initializing /data/qa-7992/ArrayIndexOutOfBoundsException.msr: 
   [testng] 11:04:55,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 11:04:55,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:55,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_11-04-55.log]
   [testng] 11:04:55,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ab10bc7 - End of configuration.
   [testng] [2024-03-20 11:04:56,070] [pool-1-thread-11] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning.msr: 
   [testng] 11:04:56,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 11:04:56,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:56,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_11-04-56.log]
   [testng] 11:04:56,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c5f972 - End of configuration.
   [testng] [2024-03-20 11:04:56,254] [pool-1-thread-10] Initializing /data/qa-17102/1 channel binning 8 time series.msr: 
   [testng] 11:04:56,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 11:04:56,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:56,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_11-04-56.log]
   [testng] 11:04:56,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aebed13 - End of configuration.
   [testng] [2024-03-20 11:04:56,397] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel single slice 4 tiles.msr: 
   [testng] 11:04:56,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 11:04:56,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:56,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_11-04-56.log]
   [testng] 11:04:56,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438c54cf - End of configuration.
   [testng] [2024-03-20 11:04:56,545] [pool-1-thread-8] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning_12-08-53_TCSPC_C0.ome.tif: 
   [testng] 11:04:56,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 11:04:56,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:56,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_11-04-56.log]
   [testng] 11:04:56,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c2447cf - End of configuration.
   [testng] [2024-03-20 11:04:57,065] [pool-1-thread-7] Initializing /data/qa-27309/181109_e3_cut.msr: 
   [testng] 11:04:57,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 11:04:57,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:57,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_11-04-57.log]
   [testng] 11:04:57,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5501ec51 - End of configuration.
   [testng] [2024-03-20 11:04:57,208] [pool-1-thread-6] Initializing /data/qa-7936/02 - not working.msr: 
   [testng] 11:04:57,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 11:04:57,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:57,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_11-04-57.log]
   [testng] 11:04:57,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60ecdb3a - End of configuration.
   [testng] [2024-03-20 11:04:57,407] [pool-1-thread-5] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_FLIM_z-stack_1.msr: 
   [testng] 11:04:57,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 11:04:57,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:57,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_11-04-57.log]
   [testng] 11:04:57,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ebe92e5 - End of configuration.
   [testng] [2024-03-20 11:04:57,562] [pool-1-thread-4] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel single slice.msr: 
   [testng] 11:04:57,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 11:04:57,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:57,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_11-04-57.log]
   [testng] 11:04:57,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2ef8e8 - End of configuration.
   [testng] [2024-03-20 11:04:57,709] [pool-1-thread-3] Initializing /data/qa-11369/01 - 770nm FITC - HybridPMT.msr: 
   [testng] 11:04:57,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 11:04:57,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:57,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_11-04-57.log]
   [testng] 11:04:57,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b0b0aac - End of configuration.
   [testng] [2024-03-20 11:04:57,856] [pool-1-thread-2] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_z-stack_FLIM_TDC_C0.ome.tif: 
   [testng] 11:04:57,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 11:04:57,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:04:57,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_11-04-57.log]
   [testng] 11:04:57,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f130848 - End of configuration.
   [testng] [2024-03-20 11:05:00,932] [pool-1-thread-4] Initializing /data/qa-7702/trim- scope msr z-stacks/02 -  500x500x105_1046x1046x57_1.875um_steps.msr: 
   [testng] [2024-03-20 11:05:01,090] [pool-1-thread-7] Initializing /data/qa-17102/2 channels FLIM time series.msr: 
   [testng] [2024-03-20 11:05:01,234] [pool-1-thread-10] Initializing /data/qa-11369/02 - 70 - 1 - tp1 - x16 TCSPC.msr: 
   [testng] [2024-03-20 11:05:01,407] [pool-1-thread-5] Initializing /data/qa-4929/OMERO data/01 - 27hpf_f2-GFP-wt1b+rfp-flk1 - 3channel-z-stack.msr: 
   [testng] [2024-03-20 11:05:01,547] [pool-1-thread-12] Initializing /data/qa-17102/1 channel binning 4 time series.msr: 
   [testng] [2024-03-20 11:05:01,691] [pool-1-thread-3] Initializing /data/qa-7992/IllegalArgumentException.msr: 
   [testng] [2024-03-20 11:05:01,875] [pool-1-thread-6] Initializing /data/qa-4929/OMERO data/01 - urea_irf_image_TCSPC-data.msr: 
   [testng] [2024-03-20 11:05:02,019] [pool-1-thread-1] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel Zstack.msr: 
   [testng] [2024-03-20 11:05:02,155] [pool-1-thread-11] Initializing /data/qa-7936/01 - working.msr: 
   [testng] [2024-03-20 11:05:02,781] [pool-1-thread-8] Initializing /data/qa-17102/2 channels FLIM z stack.msr: 
   [testng] [2024-03-20 11:05:03,197] [pool-1-thread-9] Initializing /data/qa-7658/Document1_13-09-25.msr: 
   [testng] [2024-03-20 11:05:03,565] [pool-1-thread-2] Initializing /data/paul/msr files - Paul Thomas UEA/Lifetime file.msr: 
   [testng] [2024-03-20 11:05:04,217] [pool-1-thread-3] Initializing /data/qa-7702/trim- scope msr z-stacks/02 -  500x500x105_1046x1046x57_1.875um_steps/02 -  500x500x105_1046x1046x57_1_875um_steps_11-34-02_PMT - PMT [PMT1] _C0.ome.tif: 
   [testng] [2024-03-20 11:05:05,014] [pool-1-thread-12] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel Zstack.msr: 
   [testng] [2024-03-20 11:05:05,206] [pool-1-thread-7] Initializing /data/qa-7936/z-TC - for LOCI.msr: 
   [testng] [2024-03-20 11:05:05,366] [pool-1-thread-11] Initializing /data/qa-7992/NegativeArraySizeException_small.msr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1484, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 5 minutes 1 second
Finished: SUCCESS