Started by upstream project "BIOFORMATS-test-repo" build number 61 originally caused by: Started by upstream project "Trigger" build number 68 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins11603320157287507493.sh + '[' apng = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9120_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:17:17,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:17:17,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:17:17,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:17:17,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:17:17,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:17:17,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:17:17,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:17:17,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:17:17,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:17:17,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:17:17,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:17:17,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:17:18,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:17:18,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:17:18,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:17:18,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:17:18,180 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:17:18,180 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:17:18,180 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:17:18,180 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:17:18,180 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:17:18,181 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:17:18,181 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-12 02:17:18,191] [main] java.version = 17.0.2 [testng] 02:17:18,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:17:18,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:18,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-12_02-17-18.log] [testng] 02:17:18,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-12 02:17:18,237] [main] testng.directory = /data [testng] [2024-05-12 02:17:18,238] [main] testng.configDirectory = /config [testng] [2024-05-12 02:17:18,246] [main] testng.multiplier = 1.0 [testng] [2024-05-12 02:17:18,247] [main] testng.in-memory = false [testng] [2024-05-12 02:17:18,247] [main] testng.allow-missing = false [testng] [2024-05-12 02:17:18,247] [main] user.language = en [testng] [2024-05-12 02:17:18,247] [main] user.country = ${user.country} [testng] [2024-05-12 02:17:18,247] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-12 02:17:18,563] [main] ---------------------------------------- [testng] [2024-05-12 02:17:18,563] [main] Total files: 21 [testng] [2024-05-12 02:17:18,563] [main] Scan time: 0.316 s (15 ms/file) [testng] [2024-05-12 02:17:18,564] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-12 02:17:19,517] [pool-1-thread-1] Initializing /data/samples/phug_logo.png: [testng] 02:17:19,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:19,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-12_02-17-19.log] [testng] 02:17:19,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d28d113 - End of configuration. [testng] [2024-05-12 02:17:19,591] [pool-1-thread-12] Initializing /data/samples/joanna_viera01.png: [testng] 02:17:19,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:19,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-12_02-17-19.log] [testng] 02:17:19,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b44d711 - End of configuration. [testng] [2024-05-12 02:17:19,599] [pool-1-thread-11] Initializing /data/samples/Matrix.png: [testng] 02:17:19,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:19,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-12_02-17-19.log] [testng] 02:17:19,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4336df27 - End of configuration. [testng] [2024-05-12 02:17:19,608] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png: [testng] 02:17:19,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:19,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-12_02-17-19.log] [testng] 02:17:19,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc554bb - End of configuration. [testng] [2024-05-12 02:17:19,616] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] 02:17:19,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:19,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-12_02-17-19.log] [testng] 02:17:19,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9bb08 - End of configuration. [testng] [2024-05-12 02:17:19,625] [pool-1-thread-8] Initializing /data/samples/monkey_apng.png: [testng] 02:17:19,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:19,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-12_02-17-19.log] [testng] 02:17:19,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18f899a0 - End of configuration. [testng] [2024-05-12 02:17:19,634] [pool-1-thread-7] Initializing /data/samples/chompy2.png: [testng] 02:17:19,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:19,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-12_02-17-19.log] [testng] 02:17:19,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@624c798b - End of configuration. [testng] [2024-05-12 02:17:19,641] [pool-1-thread-6] Initializing /data/samples/william_wong01.png: [testng] 02:17:19,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:19,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-12_02-17-19.log] [testng] 02:17:19,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a2db10 - End of configuration. [testng] [2024-05-12 02:17:19,650] [pool-1-thread-5] Initializing /data/samples/daniel_coltri_one.png: [testng] 02:17:19,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:19,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-12_02-17-19.log] [testng] 02:17:19,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@326cff3e - End of configuration. [testng] [2024-05-12 02:17:19,660] [pool-1-thread-4] Initializing /data/qa-7473/x.png: [testng] 02:17:19,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:19,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-12_02-17-19.log] [testng] 02:17:19,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c231000 - End of configuration. [testng] [2024-05-12 02:17:19,683] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:17:19,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:17:19,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-12_02-17-19.log] [testng] 02:17:19,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e64b297 - End of configuration. [testng] [2024-05-12 02:17:19,696] [pool-1-thread-2] Initializing /data/colin/test.sfstdge.png: [testng] 02:17:19,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:17:19,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-12_02-17-19.log] [testng] 02:17:19,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7919de0b - End of configuration. [testng] [2024-05-12 02:17:21,286] [pool-1-thread-4] Initializing /data/samples/Sun.png: [testng] [2024-05-12 02:17:21,292] [pool-1-thread-3] Initializing /data/qa-7473/n.tif: [testng] [2024-05-12 02:17:21,315] [pool-1-thread-12] Initializing /data/samples/StarV838.png: [testng] [2024-05-12 02:17:21,321] [pool-1-thread-2] Initializing /data/samples/spinfox.png: [testng] [2024-05-12 02:17:21,735] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] [2024-05-12 02:17:21,739] [pool-1-thread-8] Initializing /data/samples/william_wong05.png: [testng] [2024-05-12 02:17:21,746] [pool-1-thread-10] Initializing /data/samples/atom.png: [testng] [2024-05-12 02:17:21,751] [pool-1-thread-9] Initializing /data/samples/MoonPhases.png: [testng] [2024-05-12 02:17:21,755] [pool-1-thread-6] Initializing /data/samples/william_wong04.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS