Started by upstream project "BIOFORMATS-test-repo" build number 62
originally caused by:
Started by upstream project "Trigger" build number 69
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3396122228299600026.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9168_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:21:38,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:38,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:38,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:38,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:38,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:38,293 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:38,293 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:38,293 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:38,293 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:21:38,294 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:21:38,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 458 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-13 01:21:38,306] [main] java.version = 1.8.0_342
[testng] 01:21:38,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:38,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:38,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-13_01-21-38.log]
[testng] 01:21:38,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-13 01:21:38,374] [main] testng.directory = /data
[testng] [2024-05-13 01:21:38,374] [main] testng.configDirectory = /config
[testng] [2024-05-13 01:21:38,395] [main] testng.multiplier = 1.0
[testng] [2024-05-13 01:21:38,395] [main] testng.in-memory = false
[testng] [2024-05-13 01:21:38,395] [main] testng.allow-missing = false
[testng] [2024-05-13 01:21:38,395] [main] user.language = fr
[testng] [2024-05-13 01:21:38,395] [main] user.country = FR
[testng] [2024-05-13 01:21:38,395] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-13 01:21:59,388] [main] ----------------------------------------
[testng] [2024-05-13 01:21:59,388] [main] Total files: 283
[testng] [2024-05-13 01:21:59,388] [main] Scan time: 20.993 s (74 ms/file)
[testng] [2024-05-13 01:21:59,389] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-13 01:31:35,264] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:31:35,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:31:35,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:35,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-13_01-31-35.log]
[testng] 01:31:35,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ff96880 - End of configuration.
[testng] [2024-05-13 01:31:35,298] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] 01:31:35,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:31:35,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:35,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-13_01-31-35.log]
[testng] 01:31:35,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7abfa6d4 - End of configuration.
[testng] [2024-05-13 01:31:35,440] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:31:35,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:31:35,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:35,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-13_01-31-35.log]
[testng] 01:31:35,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24a6c5bc - End of configuration.
[testng] [2024-05-13 01:31:35,509] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif:
[testng] 01:31:35,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:31:35,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:35,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-13_01-31-35.log]
[testng] 01:31:35,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77db0c29 - End of configuration.
[testng] [2024-05-13 01:31:35,623] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] 01:31:35,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:31:35,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:35,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-13_01-31-35.log]
[testng] 01:31:35,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16bf1c03 - End of configuration.
[testng] [2024-05-13 01:31:35,752] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] 01:31:35,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:31:35,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:35,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-13_01-31-35.log]
[testng] 01:31:35,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6940550b - End of configuration.
[testng] [2024-05-13 01:31:36,030] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] 01:31:36,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:31:36,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:36,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-13_01-31-36.log]
[testng] 01:31:36,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@654e2f54 - End of configuration.
[testng] [2024-05-13 01:31:36,230] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 01:31:36,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:31:36,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:36,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-13_01-31-36.log]
[testng] 01:31:36,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2000a669 - End of configuration.
[testng] [2024-05-13 01:31:36,647] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] 01:31:36,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:31:36,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:36,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-13_01-31-36.log]
[testng] 01:31:36,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f5516 - End of configuration.
[testng] [2024-05-13 01:31:37,178] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 01:31:37,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:31:37,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:37,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-13_01-31-37.log]
[testng] 01:31:37,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49ccff81 - End of configuration.
[testng] [2024-05-13 01:31:37,218] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] 01:31:37,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:31:37,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:37,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-13_01-31-37.log]
[testng] 01:31:37,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7efb9a - End of configuration.
[testng] [2024-05-13 01:31:37,269] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir:
[testng] 01:31:37,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:31:37,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:37,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-13_01-31-37.log]
[testng] 01:31:37,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b4322e7 - End of configuration.
[testng] [2024-05-13 01:31:39,977] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-05-13 01:31:40,026] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-05-13 01:31:40,081] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-05-13 01:31:40,382] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-05-13 01:31:40,556] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-05-13 01:31:40,747] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-05-13 01:31:42,084] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir:
[testng] [2024-05-13 01:31:42,230] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-05-13 01:31:42,439] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-05-13 01:31:42,920] [pool-1-thread-4] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-05-13 01:31:44,081] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-05-13 01:31:44,222] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-05-13 01:31:44,281] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-05-13 01:31:44,384] [pool-1-thread-9] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-05-13 01:31:44,679] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-05-13 01:31:44,760] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-05-13 01:31:44,924] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-05-13 01:31:45,009] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-05-13 01:31:45,754] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-05-13 01:31:46,366] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-05-13 01:31:46,459] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-05-13 01:31:49,537] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-05-13 01:31:49,917] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-05-13 01:31:50,809] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-05-13 01:31:51,232] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-05-13 01:31:54,101] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-05-13 01:31:54,213] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-05-13 01:31:55,092] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-05-13 01:31:59,730] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-05-13 01:32:00,101] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-05-13 01:32:00,162] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-05-13 01:32:00,375] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-05-13 01:32:09,725] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-05-13 01:32:10,055] [pool-1-thread-12] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-05-13 01:32:10,220] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-05-13 01:32:10,297] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-05-13 01:32:10,402] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-05-13 01:32:11,057] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-05-13 01:32:11,980] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-05-13 01:32:12,087] [pool-1-thread-2] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-05-13 01:32:12,689] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-05-13 01:32:12,931] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-05-13 01:32:13,252] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-05-13 01:32:13,328] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-05-13 01:32:20,333] [pool-1-thread-2] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-05-13 01:32:22,219] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-05-13 01:32:22,407] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-05-13 01:32:23,174] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-05-13 01:32:24,511] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-05-13 01:32:24,864] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-05-13 01:32:25,883] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-05-13 01:32:27,718] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-05-13 01:32:28,248] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-05-13 01:32:28,884] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-05-13 01:32:29,938] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-05-13 01:32:30,689] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-05-13 01:32:35,384] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-05-13 01:32:35,848] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-05-13 01:32:36,242] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-05-13 01:32:37,696] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-05-13 01:32:38,030] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-05-13 01:32:39,035] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-05-13 01:32:39,094] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-05-13 01:32:43,241] [pool-1-thread-10] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-05-13 01:32:43,875] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-05-13 01:32:44,453] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-05-13 01:32:44,646] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-05-13 01:32:45,151] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-05-13 01:32:45,836] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-05-13 01:32:45,981] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-05-13 01:32:46,051] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-05-13 01:32:46,493] [pool-1-thread-11] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-05-13 01:33:50,072] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-05-13 01:33:50,251] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-05-13 01:33:51,940] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-05-13 01:33:52,366] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-05-13 01:33:52,726] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-05-13 01:33:53,287] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-05-13 01:33:53,702] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-05-13 01:33:53,745] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-05-13 01:33:54,064] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-05-13 01:33:55,302] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-05-13 01:33:56,513] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-05-13 01:34:05,560] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-05-13 01:34:06,721] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-05-13 01:34:07,901] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-05-13 01:34:12,056] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-05-13 01:34:13,181] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-05-13 01:34:14,197] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-05-13 01:34:14,491] [pool-1-thread-10] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-05-13 01:34:18,609] [pool-1-thread-2] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-05-13 01:34:19,227] [pool-1-thread-2] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-05-13 01:34:23,180] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-05-13 01:34:24,325] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-05-13 01:34:27,019] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-05-13 01:34:27,980] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-05-13 01:34:28,274] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-05-13 01:34:29,156] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-05-13 01:34:29,486] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-05-13 01:34:30,341] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-05-13 01:35:13,896] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-05-13 01:35:15,041] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-05-13 01:35:17,444] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-05-13 01:35:17,704] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-05-13 01:35:18,883] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-05-13 01:35:27,340] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-05-13 01:35:28,094] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-05-13 01:35:29,009] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-05-13 01:35:29,381] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-05-13 01:35:30,234] [pool-1-thread-10] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-05-13 01:35:30,560] [pool-1-thread-6] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-05-13 01:35:46,912] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-05-13 01:35:57,451] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-05-13 01:35:57,495] [pool-1-thread-4] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-05-13 01:36:41,628] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-05-13 01:36:41,872] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-05-13 01:36:42,960] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-05-13 01:36:43,171] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-05-13 01:36:43,892] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-05-13 01:36:43,996] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-05-13 01:36:45,195] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-05-13 01:36:45,785] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-05-13 01:36:46,106] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-05-13 01:36:46,656] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-05-13 01:36:46,904] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-05-13 01:36:48,622] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-05-13 01:36:48,764] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-05-13 01:36:49,056] [pool-1-thread-2] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-05-13 01:36:54,901] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-05-13 01:36:55,869] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-05-13 01:36:56,407] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-05-13 01:36:57,132] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-05-13 01:36:59,020] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-05-13 01:37:10,027] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-05-13 01:37:11,279] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-05-13 01:37:11,881] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-05-13 01:37:12,802] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-05-13 01:37:13,573] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-05-13 01:37:14,944] [pool-1-thread-7] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-05-13 01:37:15,667] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-05-13 01:37:16,104] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-05-13 01:37:16,910] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-05-13 01:37:18,902] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-05-13 01:37:24,023] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-05-13 01:37:25,344] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-05-13 01:37:26,535] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-05-13 01:37:27,506] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-05-13 01:37:28,717] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-05-13 01:37:30,055] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-05-13 01:37:30,372] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-05-13 01:37:36,617] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-05-13 01:37:37,176] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-05-13 01:37:37,583] [pool-1-thread-5] Initializing /data/olympus/XYZt.oir:
[testng] [2024-05-13 01:37:55,383] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-05-13 01:37:56,241] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-05-13 01:37:56,526] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-05-13 01:37:57,035] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-05-13 01:37:57,307] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-05-13 01:37:58,476] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-05-13 01:37:58,831] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-05-13 01:37:59,778] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-05-13 01:38:03,244] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-05-13 01:38:03,458] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-05-13 01:38:04,626] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-05-13 01:38:04,865] [pool-1-thread-3] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-05-13 01:38:05,842] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-05-13 01:38:09,801] [pool-1-thread-3] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-05-13 01:38:11,222] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-05-13 01:39:38,359] [pool-1-thread-8] Initializing /data/qa-17335/1.oir:
[testng] [2024-05-13 01:39:39,055] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-05-13 01:39:40,245] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-05-13 01:39:41,399] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-05-13 01:39:42,273] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-05-13 01:39:57,984] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 02:50:06,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:50:06,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:50:06,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-13_02-50-06.log]
[testng] 02:50:06,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 88 minutes 33 seconds
Finished: SUCCESS