Started by upstream project "BIOFORMATS-test-repo" build number 62
originally caused by:
Started by upstream project "Trigger" build number 69
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17474008940853455007.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9283_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:24:48,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:24:48,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:24:48,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:24:48,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:24:48,202 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:24:48,203 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:24:48,203 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:24:48,203 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:24:48,203 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 02:24:48,204 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 02:24:48,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 469 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-13 02:24:48,215] [main] java.version = 1.8.0_342
[testng] 02:24:48,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:24:48,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:48,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-13_02-24-48.log]
[testng] 02:24:48,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-13 02:24:48,340] [main] testng.directory = /data
[testng] [2024-05-13 02:24:48,340] [main] testng.configDirectory = /config
[testng] [2024-05-13 02:24:48,369] [main] testng.multiplier = 1.0
[testng] [2024-05-13 02:24:48,369] [main] testng.in-memory = false
[testng] [2024-05-13 02:24:48,369] [main] testng.allow-missing = false
[testng] [2024-05-13 02:24:48,369] [main] user.language = fr
[testng] [2024-05-13 02:24:48,369] [main] user.country = FR
[testng] [2024-05-13 02:24:48,369] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-13 02:29:50,528] [main] ----------------------------------------
[testng] [2024-05-13 02:29:50,528] [main] Total files: 2169
[testng] [2024-05-13 02:29:50,528] [main] Scan time: 302.158 s (139 ms/file)
[testng] [2024-05-13 02:29:50,529] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-13 02:48:25,623] [pool-1-thread-1] Initializing /data/juergen/Experiment/experiment_descriptor.xml:
[testng] 02:48:25,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:48:25,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:25,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-13_02-48-25.log]
[testng] 02:48:25,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47992a42 - End of configuration.
[testng] [2024-05-13 02:48:25,888] [pool-1-thread-12] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml:
[testng] 02:48:25,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:48:25,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:25,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-13_02-48-25.log]
[testng] 02:48:25,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45371a5 - End of configuration.
[testng] [2024-05-13 02:49:55,965] [pool-1-thread-11] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml:
[testng] 02:49:55,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:49:55,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:55,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-13_02-49-55.log]
[testng] 02:49:55,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7952be0a - End of configuration.
[testng] [2024-05-13 02:49:56,217] [pool-1-thread-10] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml:
[testng] 02:49:56,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:49:56,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:56,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-13_02-49-56.log]
[testng] 02:49:56,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d49718 - End of configuration.
[testng] [2024-05-13 02:49:56,358] [pool-1-thread-9] Initializing /data/ruben/plate_002/experiment_descriptor.xml:
[testng] 02:49:56,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:49:56,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:56,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-13_02-49-56.log]
[testng] 02:49:56,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f81a915 - End of configuration.
[testng] [2024-05-13 02:49:56,427] [pool-1-thread-8] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml:
[testng] 02:49:56,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:49:56,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:56,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-13_02-49-56.log]
[testng] 02:49:56,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8f408c - End of configuration.
[testng] [2024-05-13 02:51:19,202] [pool-1-thread-7] Initializing /data/embl/Maik_001/experiment_descriptor.xml:
[testng] 02:51:19,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:51:19,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:51:19,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-13_02-51-19.log]
[testng] 02:51:19,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79df6a06 - End of configuration.
[testng] [2024-05-13 02:51:26,917] [pool-1-thread-6] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml:
[testng] 02:51:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:51:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:51:26,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-13_02-51-26.log]
[testng] 02:51:26,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6109ec93 - End of configuration.
[testng] [2024-05-13 02:51:27,967] [pool-1-thread-5] Initializing /data/gideon/experiment_descriptor.xml:
[testng] 02:51:27,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:51:27,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:51:27,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-13_02-51-27.log]
[testng] 02:51:27,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dc26a28 - End of configuration.
[testng] [2024-05-13 02:51:58,183] [pool-1-thread-4] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml:
[testng] 02:51:58,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:51:58,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:51:58,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-13_02-51-58.log]
[testng] 02:51:58,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53289c6 - End of configuration.
[testng] [2024-05-13 02:53:01,656] [pool-1-thread-3] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml:
[testng] 02:53:01,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:53:01,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:53:01,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-13_02-53-01.log]
[testng] 02:53:01,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22f8b558 - End of configuration.
[testng] [2024-05-13 02:53:23,611] [pool-1-thread-2] Initializing /data/ruben/20100827_004/experiment_descriptor.xml:
[testng] 02:53:23,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:53:23,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:53:23,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-13_02-53-23.log]
[testng] 02:53:23,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f30b79a - End of configuration.
[testng] [2024-05-13 02:55:30,461] [pool-1-thread-1] Initializing /data/nadine/experiment_descriptor.xml:
[testng] [2024-05-13 02:55:33,068] [pool-1-thread-1] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml:
[testng] [2024-05-13 02:56:17,100] [pool-1-thread-10] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml:
[testng] [2024-05-13 02:57:52,377] [pool-1-thread-7] Initializing /data/christian/example/experiment_descriptor.xml:
[testng] [2024-05-13 02:57:53,336] [pool-1-thread-9] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 43 minutes 6 seconds
Finished: SUCCESS