Started by upstream project "BIOFORMATS-test-repo" build number 63
originally caused by:
Started by upstream project "Trigger" build number 70
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins2936390550702770713.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9346_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:21:42,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:42,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:21:42,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:42,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:42,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:42,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:42,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:42,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:42,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:42,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:42,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:42,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:42,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:42,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:42,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:42,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:42,457 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:42,458 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:42,458 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:42,458 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:42,458 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:21:42,459 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:21:42,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-14 01:21:42,469] [main] java.version = 11.0.16
[testng] 01:21:42,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:42,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:42,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-14_01-21-42.log]
[testng] 01:21:42,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-05-14 01:21:42,520] [main] testng.directory = /data
[testng] [2024-05-14 01:21:42,520] [main] testng.configDirectory = /config
[testng] [2024-05-14 01:21:42,583] [main] testng.multiplier = 1.0
[testng] [2024-05-14 01:21:42,585] [main] testng.in-memory = false
[testng] [2024-05-14 01:21:42,585] [main] testng.allow-missing = false
[testng] [2024-05-14 01:21:42,585] [main] user.language = en
[testng] [2024-05-14 01:21:42,585] [main] user.country = ${user.country}
[testng] [2024-05-14 01:21:42,585] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-14 01:21:43,196] [main] ----------------------------------------
[testng] [2024-05-14 01:21:43,196] [main] Total files: 31
[testng] [2024-05-14 01:21:43,196] [main] Scan time: 0.611 s (19 ms/file)
[testng] [2024-05-14 01:21:43,196] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-14 01:21:44,763] [pool-1-thread-1] Initializing /data/curtis/image2.bmp:
[testng] 01:21:44,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:44,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-14_01-21-44.log]
[testng] 01:21:44,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693b68d8 - End of configuration.
[testng] [2024-05-14 01:21:44,784] [pool-1-thread-12] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng] 01:21:44,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:21:44,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-14_01-21-44.log]
[testng] 01:21:44,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d54c864 - End of configuration.
[testng] [2024-05-14 01:21:44,795] [pool-1-thread-11] Initializing /data/bk/ch_00.bmp:
[testng] 01:21:44,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:21:44,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-14_01-21-44.log]
[testng] 01:21:44,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337c4759 - End of configuration.
[testng] [2024-05-14 01:21:44,820] [pool-1-thread-10] Initializing /data/ticket-12971/foo.bmp:
[testng] 01:21:44,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:21:44,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-14_01-21-44.log]
[testng] 01:21:44,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bcc4d80 - End of configuration.
[testng] [2024-05-14 01:21:44,838] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] 01:21:44,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:21:44,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-14_01-21-44.log]
[testng] 01:21:44,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7683724c - End of configuration.
[testng] [2024-05-14 01:21:44,851] [pool-1-thread-8] Initializing /data/big-images/6kx6k.bmp:
[testng] 01:21:44,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:44,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-14_01-21-44.log]
[testng] 01:21:44,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59277e9d - End of configuration.
[testng] [2024-05-14 01:21:44,863] [pool-1-thread-7] Initializing /data/curtis/image1.bmp:
[testng] 01:21:44,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:44,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-14_01-21-44.log]
[testng] 01:21:44,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11171af6 - End of configuration.
[testng] [2024-05-14 01:21:44,927] [pool-1-thread-6] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng] 01:21:44,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:44,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-14_01-21-44.log]
[testng] 01:21:44,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fc097c7 - End of configuration.
[testng] [2024-05-14 01:21:44,940] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] 01:21:44,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:44,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-14_01-21-44.log]
[testng] 01:21:44,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d2225ef - End of configuration.
[testng] [2024-05-14 01:21:44,960] [pool-1-thread-4] Initializing /data/curtis/image3.bmp:
[testng] 01:21:44,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:44,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-14_01-21-44.log]
[testng] 01:21:44,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a72623 - End of configuration.
[testng] [2024-05-14 01:21:44,969] [pool-1-thread-3] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] 01:21:44,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:44,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:44,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-14_01-21-44.log]
[testng] 01:21:44,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5177e441 - End of configuration.
[testng] [2024-05-14 01:21:45,007] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] 01:21:45,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:45,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:45,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-14_01-21-45.log]
[testng] 01:21:45,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c088711 - End of configuration.
[testng] [2024-05-14 01:21:47,575] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] [2024-05-14 01:21:47,584] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] [2024-05-14 01:21:47,591] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] [2024-05-14 01:21:47,600] [pool-1-thread-5] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] [2024-05-14 01:21:47,605] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] [2024-05-14 01:21:47,611] [pool-1-thread-12] Initializing /data/curtis/image5.bmp:
[testng] [2024-05-14 01:21:47,616] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] [2024-05-14 01:21:47,634] [pool-1-thread-10] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng] [2024-05-14 01:21:47,643] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2024-05-14 01:21:47,652] [pool-1-thread-7] Initializing /data/stephane/holo0908.bmp:
[testng] [2024-05-14 01:21:47,663] [pool-1-thread-11] Initializing /data/frank/cell_mask_error.bmp:
[testng] [2024-05-14 01:21:48,410] [pool-1-thread-12] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] [2024-05-14 01:21:48,826] [pool-1-thread-5] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] [2024-05-14 01:21:48,903] [pool-1-thread-9] Initializing /data/curtis/image4.bmp:
[testng] [2024-05-14 01:21:48,926] [pool-1-thread-3] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] [2024-05-14 01:21:48,937] [pool-1-thread-1] Initializing /data/brian/images/raw_a.bmp:
[testng] [2024-05-14 01:21:48,943] [pool-1-thread-6] Initializing /data/big-images/8kx8k.bmp:
[testng] [2024-05-14 01:21:48,977] [pool-1-thread-2] Initializing /data/brian/images/23srp5dksub.bmp:
[testng] [2024-05-14 01:21:48,996] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS