Started by upstream project "BIOFORMATS-test-repo" build number 63
originally caused by:
 Started by upstream project "Trigger" build number 70
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13427138451808444185.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9438_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:13:12,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:13:12,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:13:12,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:13:12,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:13:12,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:13:12,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:13:12,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:13:12,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:13:12,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:13:12,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:13:12,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:13:12,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:13:13,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:13:13,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:13:13,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:13:13,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:13:13,072 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:13:13,073 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:13:13,073 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:13:13,073 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:13:13,073 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:13:13,075 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:13:13,075 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-05-14 02:13:13,088] [main] java.version = 11.0.16
   [testng] 02:13:13,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:13:13,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:13,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-14_02-13-13.log]
   [testng] 02:13:13,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-05-14 02:13:13,157] [main] testng.directory = /data
   [testng] [2024-05-14 02:13:13,157] [main] testng.configDirectory = /config
   [testng] [2024-05-14 02:13:13,168] [main] testng.multiplier = 1.0
   [testng] [2024-05-14 02:13:13,169] [main] testng.in-memory = false
   [testng] [2024-05-14 02:13:13,169] [main] testng.allow-missing = false
   [testng] [2024-05-14 02:13:13,169] [main] user.language = en
   [testng] [2024-05-14 02:13:13,169] [main] user.country = ${user.country}
   [testng] [2024-05-14 02:13:13,169] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-05-14 02:13:20,943] [main] ----------------------------------------
   [testng] [2024-05-14 02:13:20,944] [main] Total files: 67
   [testng] [2024-05-14 02:13:20,944] [main] Scan time: 7.773 s (116 ms/file)
   [testng] [2024-05-14 02:13:20,944] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 59 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-05-14 02:13:42,712] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_IMS3.ims: 
   [testng] 02:13:42,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:13:42,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-14_02-13-42.log]
   [testng] 02:13:42,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ad278bf - End of configuration.
   [testng] [2024-05-14 02:13:42,751] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0007.ims: 
   [testng] 02:13:42,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:13:42,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-14_02-13-42.log]
   [testng] 02:13:42,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@427df843 - End of configuration.
   [testng] [2024-05-14 02:13:42,769] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0001.ims: 
   [testng] 02:13:42,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:13:42,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-14_02-13-42.log]
   [testng] 02:13:42,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ebc29ea - End of configuration.
   [testng] [2024-05-14 02:13:42,782] [pool-1-thread-10] Initializing /data/public/davemason/Convallaria_3C_10T_confocal.ims: 
   [testng] 02:13:42,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:13:42,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-14_02-13-42.log]
   [testng] 02:13:42,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31704d90 - End of configuration.
   [testng] [2024-05-14 02:13:42,814] [pool-1-thread-9] Initializing /data/generated/10-31_E_t0009.ims: 
   [testng] 02:13:42,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:13:42,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-14_02-13-42.log]
   [testng] 02:13:42,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678fa627 - End of configuration.
   [testng] [2024-05-14 02:13:42,827] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: 
   [testng] 02:13:42,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:13:42,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-14_02-13-42.log]
   [testng] 02:13:42,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174efbe9 - End of configuration.
   [testng] [2024-05-14 02:13:42,843] [pool-1-thread-7] Initializing /data/jason/imaris_5_5_demoimages/PtK2Cell.ims: 
   [testng] 02:13:42,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:13:42,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-14_02-13-42.log]
   [testng] 02:13:42,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ea50118 - End of configuration.
   [testng] [2024-05-14 02:13:42,873] [pool-1-thread-6] Initializing /data/oliver/Stack2_8Bit.ims: 
   [testng] 02:13:42,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:13:42,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-14_02-13-42.log]
   [testng] 02:13:42,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b22f88 - End of configuration.
   [testng] [2024-05-14 02:13:42,925] [pool-1-thread-5] Initializing /data/qa-17522/2016-12-14_08.43.34_Sample Prefix_WAINWRIGHT James_Protocol.ims: 
   [testng] 02:13:42,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:13:42,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:42,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-14_02-13-42.log]
   [testng] 02:13:42,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3965769a - End of configuration.
   [testng] [2024-05-14 02:13:48,374] [pool-1-thread-4] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: 
   [testng] 02:13:48,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:13:48,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:48,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-14_02-13-48.log]
   [testng] 02:13:48,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60006ca7 - End of configuration.
   [testng] [2024-05-14 02:13:48,409] [pool-1-thread-3] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal.ims: 
   [testng] 02:13:48,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:13:48,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:48,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-14_02-13-48.log]
   [testng] 02:13:48,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e845999 - End of configuration.
   [testng] [2024-05-14 02:13:48,448] [pool-1-thread-2] Initializing /data/jake/p75Cherry M2 010-3~B.ims: 
   [testng] 02:13:48,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:13:48,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:48,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-14_02-13-48.log]
   [testng] 02:13:48,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d387c7 - End of configuration.
   [testng] [2024-05-14 02:13:51,415] [pool-1-thread-8] Initializing /data/jason/imaris_5_5_demoimages/R18Demo.ims: 
   [testng] [2024-05-14 02:13:52,019] [pool-1-thread-8] Initializing /data/niko/imaris-testfile_5x5x5.ims: 
   [testng] [2024-05-14 02:13:52,030] [pool-1-thread-12] Initializing /data/qa-8019/wrong_num_dimensions.ims: 

BUILD SUCCESSFUL
Total time: 2 minutes 28 seconds
Finished: SUCCESS