Started by upstream project "BIOFORMATS-test-repo" build number 6
originally caused by:
Started by upstream project "Trigger" build number 9
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14666863726692844277.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_946_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 11:52:45,694 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 11:52:45,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 11:52:45,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:52:45,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:52:45,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:52:45,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:52:45,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:52:45,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:52:45,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:52:45,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:52:45,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:52:45,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:52:45,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:52:45,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:52:45,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:52:45,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:52:45,878 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:52:45,878 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:52:45,878 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:52:45,879 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:52:45,879 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 11:52:45,879 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 11:52:45,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-20 11:52:45,888] [main] java.version = 17.0.2
[testng] 11:52:45,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:52:45,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:52:45,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_11-52-45.log]
[testng] 11:52:45,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-03-20 11:52:45,932] [main] testng.directory = /data
[testng] [2024-03-20 11:52:45,933] [main] testng.configDirectory = /config
[testng] [2024-03-20 11:52:45,941] [main] testng.multiplier = 1.0
[testng] [2024-03-20 11:52:45,942] [main] testng.in-memory = false
[testng] [2024-03-20 11:52:45,942] [main] testng.allow-missing = false
[testng] [2024-03-20 11:52:45,942] [main] user.language = en
[testng] [2024-03-20 11:52:45,942] [main] user.country = ${user.country}
[testng] [2024-03-20 11:52:45,942] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-20 11:52:52,943] [main] ----------------------------------------
[testng] [2024-03-20 11:52:52,943] [main] Total files: 31
[testng] [2024-03-20 11:52:52,943] [main] Scan time: 7.001 s (225 ms/file)
[testng] [2024-03-20 11:52:52,943] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 30 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-20 11:52:59,820] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2:
[testng] 11:52:59,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 11:52:59,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:52:59,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_11-52-59.log]
[testng] 11:52:59,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5148a4aa - End of configuration.
[testng] [2024-03-20 11:52:59,967] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2:
[testng] 11:52:59,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 11:52:59,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:52:59,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_11-52-59.log]
[testng] 11:52:59,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df40da6 - End of configuration.
[testng] [2024-03-20 11:53:00,106] [pool-1-thread-11] Initializing /data/david/multichannel-2d test-non MBF-type.jp2:
[testng] 11:53:00,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 11:53:00,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_11-53-00.log]
[testng] 11:53:00,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@228670ca - End of configuration.
[testng] [2024-03-20 11:53:00,246] [pool-1-thread-10] Initializing /data/angel/002_L050071_32_01_09_x2.jp2:
[testng] 11:53:00,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 11:53:00,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_11-53-00.log]
[testng] 11:53:00,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45ad80bf - End of configuration.
[testng] [2024-03-20 11:53:00,393] [pool-1-thread-9] Initializing /data/david/multichannel-2d test.jp2:
[testng] 11:53:00,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 11:53:00,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_11-53-00.log]
[testng] 11:53:00,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fe7402c - End of configuration.
[testng] [2024-03-20 11:53:00,505] [pool-1-thread-8] Initializing /data/big-images/2kx2k.jpf:
[testng] 11:53:00,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 11:53:00,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_11-53-00.log]
[testng] 11:53:00,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6679161c - End of configuration.
[testng] [2024-03-20 11:53:00,636] [pool-1-thread-7] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2:
[testng] 11:53:00,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 11:53:00,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_11-53-00.log]
[testng] 11:53:00,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9420dcc - End of configuration.
[testng] [2024-03-20 11:53:00,777] [pool-1-thread-6] Initializing /data/kraig/head.jp2:
[testng] 11:53:00,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 11:53:00,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_11-53-00.log]
[testng] 11:53:00,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7ba0e5 - End of configuration.
[testng] [2024-03-20 11:53:00,957] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx:
[testng] 11:53:00,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 11:53:00,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:00,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_11-53-00.log]
[testng] 11:53:00,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58878737 - End of configuration.
[testng] [2024-03-20 11:53:01,273] [pool-1-thread-4] Initializing /data/vikram/Captured 5.jp2:
[testng] 11:53:01,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 11:53:01,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:01,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_11-53-01.log]
[testng] 11:53:01,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3af3720e - End of configuration.
[testng] [2024-03-20 11:53:01,470] [pool-1-thread-3] Initializing /data/david/multichannel-3d-MBF-type.jpx:
[testng] 11:53:01,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 11:53:01,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:01,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_11-53-01.log]
[testng] 11:53:01,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a537acb - End of configuration.
[testng] [2024-03-20 11:53:02,031] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2:
[testng] 11:53:02,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 11:53:02,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:02,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_11-53-02.log]
[testng] 11:53:02,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4116fd1f - End of configuration.
[testng] [2024-03-20 11:53:04,860] [pool-1-thread-12] Initializing /data/angel/052_L050071_56_x2hv.jp2:
[testng] [2024-03-20 11:53:05,034] [pool-1-thread-1] Initializing /data/frans/flower.jp2:
[testng] [2024-03-20 11:53:05,158] [pool-1-thread-4] Initializing /data/david/000000_000001.jpx:
[testng] [2024-03-20 11:53:05,335] [pool-1-thread-2] Initializing /data/venu/Multichannel 3.jp2:
[testng] [2024-03-20 11:53:05,585] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf:
[testng] [2024-03-20 11:53:08,387] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2:
[testng] [2024-03-20 11:53:10,023] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff:
[testng] [2024-03-20 11:53:12,534] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2:
[testng] [2024-03-20 11:53:12,726] [pool-1-thread-4] Initializing /data/big-images/8kx8k.jpf:
[testng] [2024-03-20 11:53:13,058] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2:
[testng] [2024-03-20 11:53:14,084] [pool-1-thread-10] Initializing /data/venu/Multichannel 3a.jpg:
[testng] [2024-03-20 11:53:14,563] [pool-1-thread-8] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2:
[testng] [2024-03-20 11:53:15,738] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.tiff:
[testng] [2024-03-20 11:53:17,502] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2:
[testng] [2024-03-20 11:53:18,424] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jpc:
[testng] [2024-03-20 11:53:18,596] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig:
[testng] [2024-03-20 11:53:20,385] [pool-1-thread-12] Initializing /data/david/C1R1_FOS.jp2:
[testng] [2024-03-20 11:53:21,048] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1590, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 52 seconds
Finished: SUCCESS