Started by upstream project "BIOFORMATS-test-repo" build number 63
originally caused by:
Started by upstream project "Trigger" build number 70
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4170649758777446926.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9467_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:38:48,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:38:48,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:38:48,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:38:48,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:38:48,760 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:38:48,760 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:38:48,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:38:48,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:38:48,760 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
[testng] 02:38:48,761 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
[testng] 02:38:48,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 404 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-14 02:38:48,771] [main] java.version = 11.0.16
[testng] 02:38:48,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:38:48,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:48,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-14_02-38-48.log]
[testng] 02:38:48,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-05-14 02:38:48,953] [main] testng.directory = /data
[testng] [2024-05-14 02:38:48,954] [main] testng.configDirectory = /config
[testng] [2024-05-14 02:38:48,964] [main] testng.multiplier = 1.0
[testng] [2024-05-14 02:38:48,966] [main] testng.in-memory = false
[testng] [2024-05-14 02:38:48,966] [main] testng.allow-missing = false
[testng] [2024-05-14 02:38:48,966] [main] user.language = en
[testng] [2024-05-14 02:38:48,966] [main] user.country = ${user.country}
[testng] [2024-05-14 02:38:48,966] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-14 02:38:49,979] [main] ----------------------------------------
[testng] [2024-05-14 02:38:49,979] [main] Total files: 11
[testng] [2024-05-14 02:38:49,979] [main] Scan time: 1.013 s (92 ms/file)
[testng] [2024-05-14 02:38:49,979] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-14 02:38:51,594] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008R.tif:
[testng] 02:38:51,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:38:51,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:51,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-14_02-38-51.log]
[testng] 02:38:51,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75a65d09 - End of configuration.
[testng] [2024-05-14 02:38:51,663] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2:
[testng] 02:38:51,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:38:51,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:51,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-14_02-38-51.log]
[testng] 02:38:51,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15ff43b4 - End of configuration.
[testng] [2024-05-14 02:38:51,870] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed008G.tif:
[testng] 02:38:51,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:38:51,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:51,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-14_02-38-51.log]
[testng] 02:38:51,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6133e41c - End of configuration.
[testng] [2024-05-14 02:38:51,977] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png:
[testng] 02:38:51,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:38:51,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:51,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-14_02-38-51.log]
[testng] 02:38:51,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e1bbd02 - End of configuration.
[testng] [2024-05-14 02:38:51,994] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed005.bmp:
[testng] 02:38:51,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:38:51,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:51,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-14_02-38-51.log]
[testng] 02:38:51,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22d0fa23 - End of configuration.
[testng] [2024-05-14 02:38:52,010] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed007.gif:
[testng] 02:38:52,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:38:52,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:52,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-14_02-38-52.log]
[testng] 02:38:52,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58752158 - End of configuration.
[testng] [2024-05-14 02:38:52,047] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008B.tif:
[testng] 02:38:52,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:38:52,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:52,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-14_02-38-52.log]
[testng] 02:38:52,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a92f7c3 - End of configuration.
[testng] [2024-05-14 02:38:52,117] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed004.tif:
[testng] 02:38:52,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:38:52,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:52,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-14_02-38-52.log]
[testng] 02:38:52,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eafc302 - End of configuration.
[testng] [2024-05-14 02:38:52,234] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed008BGR.tif:
[testng] 02:38:52,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:38:52,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:52,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-14_02-38-52.log]
[testng] 02:38:52,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cf1caa5 - End of configuration.
[testng] [2024-05-14 02:38:52,312] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed003.jpg:
[testng] 02:38:52,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:38:52,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:52,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-14_02-38-52.log]
[testng] 02:38:52,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f9bfc04 - End of configuration.
[testng] [2024-05-14 02:38:52,380] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2:
[testng] 02:38:52,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:38:52,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:52,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-14_02-38-52.log]
[testng] 02:38:52,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b3c952e - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS