Started by upstream project "BIOFORMATS-test-repo" build number 6
originally caused by:
Started by upstream project "Trigger" build number 9
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins2283130930658697690.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_948_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 11:58:38,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 11:58:38,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 11:58:38,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:58:38,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:58:38,902 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:58:38,902 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:58:38,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:58:38,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:58:38,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:58:38,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:58:38,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:58:38,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:58:39,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:58:39,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:58:39,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:58:39,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:58:39,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:58:39,089 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:58:39,089 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:58:39,089 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:58:39,089 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 11:58:39,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 11:58:39,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-20 11:58:39,099] [main] java.version = 17.0.2
[testng] 11:58:39,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:58:39,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:39,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_11-58-39.log]
[testng] 11:58:39,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-03-20 11:58:39,144] [main] testng.directory = /data
[testng] [2024-03-20 11:58:39,144] [main] testng.configDirectory = /config
[testng] [2024-03-20 11:58:39,152] [main] testng.multiplier = 1.0
[testng] [2024-03-20 11:58:39,153] [main] testng.in-memory = false
[testng] [2024-03-20 11:58:39,153] [main] testng.allow-missing = false
[testng] [2024-03-20 11:58:39,153] [main] user.language = en
[testng] [2024-03-20 11:58:39,154] [main] user.country = ${user.country}
[testng] [2024-03-20 11:58:39,154] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-20 11:58:41,044] [main] ----------------------------------------
[testng] [2024-03-20 11:58:41,044] [main] Total files: 22
[testng] [2024-03-20 11:58:41,044] [main] Scan time: 1.89 s (85 ms/file)
[testng] [2024-03-20 11:58:41,044] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-20 11:58:57,682] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif:
[testng] 11:58:57,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 11:58:57,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:57,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_11-58-57.log]
[testng] 11:58:57,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a3fa9f0 - End of configuration.
[testng] [2024-03-20 11:58:58,024] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF:
[testng] 11:58:58,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 11:58:58,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_11-58-58.log]
[testng] 11:58:58,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1acb2049 - End of configuration.
[testng] [2024-03-20 11:58:58,244] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 11:58:58,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 11:58:58,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_11-58-58.log]
[testng] 11:58:58,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16350833 - End of configuration.
[testng] [2024-03-20 11:58:58,339] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq:
[testng] 11:58:58,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 11:58:58,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_11-58-58.log]
[testng] 11:58:58,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aea48b7 - End of configuration.
[testng] [2024-03-20 11:58:58,539] [pool-1-thread-9] Initializing /data/converted/dub01.ipw:
[testng] 11:58:58,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 11:58:58,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_11-58-58.log]
[testng] 11:58:58,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483e5506 - End of configuration.
[testng] [2024-03-20 11:58:58,636] [pool-1-thread-8] Initializing /data/converted/clown.ipw:
[testng] 11:58:58,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 11:58:58,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_11-58-58.log]
[testng] 11:58:58,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3888386c - End of configuration.
[testng] [2024-03-20 11:58:58,729] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 11:58:58,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 11:58:58,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_11-58-58.log]
[testng] 11:58:58,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d808a3 - End of configuration.
[testng] [2024-03-20 11:58:58,840] [pool-1-thread-6] Initializing /data/converted/clown8c.seq:
[testng] 11:58:58,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 11:58:58,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_11-58-58.log]
[testng] 11:58:58,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6281fdeb - End of configuration.
[testng] [2024-03-20 11:58:58,948] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw:
[testng] 11:58:58,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 11:58:58,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:58,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_11-58-58.log]
[testng] 11:58:58,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f33869 - End of configuration.
[testng] [2024-03-20 11:58:59,137] [pool-1-thread-4] Initializing /data/converted/clown.tif:
[testng] 11:58:59,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 11:58:59,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:59,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_11-58-59.log]
[testng] 11:58:59,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fbbd9f - End of configuration.
[testng] [2024-03-20 11:58:59,247] [pool-1-thread-3] Initializing /data/converted/clown.seq:
[testng] 11:58:59,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 11:58:59,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:59,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_11-58-59.log]
[testng] 11:58:59,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@176382f5 - End of configuration.
[testng] [2024-03-20 11:58:59,356] [pool-1-thread-2] Initializing /data/converted/clown8c.tif:
[testng] 11:58:59,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 11:58:59,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:58:59,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_11-58-59.log]
[testng] 11:58:59,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eb0c2da - End of configuration.
[testng] [2024-03-20 11:59:01,696] [pool-1-thread-4] Initializing /data/converted/dub01.seq:
[testng] [2024-03-20 11:59:01,789] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF:
[testng] [2024-03-20 11:59:01,880] [pool-1-thread-3] Initializing /data/converted/dub01.pic:
[testng] [2024-03-20 11:59:01,967] [pool-1-thread-8] Initializing /data/converted/clown8c.ipw:
[testng] [2024-03-20 11:59:02,037] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-03-20 11:59:02,134] [pool-1-thread-9] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-03-20 11:59:02,260] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF:
[testng] [2024-03-20 11:59:02,487] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-03-20 11:59:02,766] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 20 seconds
Finished: SUCCESS