Started by upstream project "BIOFORMATS-test-repo" build number 64
originally caused by:
Started by upstream project "Trigger" build number 71
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3731058411645194595.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9496_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:20:46,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:20:46,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:20:46,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:46,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:46,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:20:46,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:20:46,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:20:46,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:46,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:46,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:20:46,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:20:46,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:20:46,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:20:46,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:20:46,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:20:46,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:20:46,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:20:46,382 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:20:46,382 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:20:46,382 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:20:46,382 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:20:46,383 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:20:46,383 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 218 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-15 01:20:46,392] [main] java.version = 17.0.2
[testng] 01:20:46,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:20:46,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:46,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-15_01-20-46.log]
[testng] 01:20:46,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-15 01:20:46,440] [main] testng.directory = /data
[testng] [2024-05-15 01:20:46,440] [main] testng.configDirectory = /config
[testng] [2024-05-15 01:20:46,449] [main] testng.multiplier = 1.0
[testng] [2024-05-15 01:20:46,450] [main] testng.in-memory = false
[testng] [2024-05-15 01:20:46,450] [main] testng.allow-missing = false
[testng] [2024-05-15 01:20:46,450] [main] user.language = en
[testng] [2024-05-15 01:20:46,450] [main] user.country = ${user.country}
[testng] [2024-05-15 01:20:46,450] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-15 01:21:03,298] [main] ----------------------------------------
[testng] [2024-05-15 01:21:03,298] [main] Total files: 283
[testng] [2024-05-15 01:21:03,298] [main] Scan time: 16.847 s (59 ms/file)
[testng] [2024-05-15 01:21:03,298] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-15 01:28:46,110] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] 01:28:46,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:28:46,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-15_01-28-46.log]
[testng] 01:28:46,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684d5229 - End of configuration.
[testng] [2024-05-15 01:28:46,208] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] 01:28:46,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:28:46,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-15_01-28-46.log]
[testng] 01:28:46,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d51d4c9 - End of configuration.
[testng] [2024-05-15 01:28:46,315] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:28:46,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:28:46,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-15_01-28-46.log]
[testng] 01:28:46,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e48ca7 - End of configuration.
[testng] [2024-05-15 01:28:46,408] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] 01:28:46,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:28:46,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-15_01-28-46.log]
[testng] 01:28:46,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cdaec6d - End of configuration.
[testng] [2024-05-15 01:28:46,496] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] 01:28:46,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:28:46,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-15_01-28-46.log]
[testng] 01:28:46,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c78043 - End of configuration.
[testng] [2024-05-15 01:28:46,577] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir:
[testng] 01:28:46,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:28:46,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-15_01-28-46.log]
[testng] 01:28:46,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ced4a99 - End of configuration.
[testng] [2024-05-15 01:28:46,642] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir:
[testng] 01:28:46,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:28:46,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:46,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-15_01-28-46.log]
[testng] 01:28:46,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eea36a3 - End of configuration.
[testng] [2024-05-15 01:29:03,808] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] 01:29:03,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:03,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:03,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-15_01-29-03.log]
[testng] 01:29:03,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f807767 - End of configuration.
[testng] [2024-05-15 01:29:03,854] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:29:03,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:03,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:03,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-15_01-29-03.log]
[testng] 01:29:03,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cff0c00 - End of configuration.
[testng] [2024-05-15 01:29:03,876] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] 01:29:03,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:03,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:03,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-15_01-29-03.log]
[testng] 01:29:03,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143d9c76 - End of configuration.
[testng] [2024-05-15 01:29:03,955] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 01:29:03,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:03,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:03,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-15_01-29-03.log]
[testng] 01:29:03,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29891d9a - End of configuration.
[testng] [2024-05-15 01:29:03,999] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] 01:29:03,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:03,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:04,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-15_01-29-04.log]
[testng] 01:29:04,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20984af4 - End of configuration.
[testng] [2024-05-15 01:29:06,907] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-05-15 01:29:07,110] [pool-1-thread-11] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-05-15 01:29:08,602] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-05-15 01:29:08,840] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-05-15 01:29:09,273] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-05-15 01:29:09,357] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-05-15 01:29:09,407] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-05-15 01:29:09,437] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-05-15 01:29:09,551] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-05-15 01:29:09,812] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-05-15 01:29:10,074] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-05-15 01:29:11,697] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-05-15 01:29:11,949] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-05-15 01:29:12,237] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-05-15 01:29:12,557] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-05-15 01:29:12,638] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-05-15 01:29:12,940] [pool-1-thread-3] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-05-15 01:29:59,966] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-05-15 01:30:00,264] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-05-15 01:30:00,470] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-05-15 01:30:00,748] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-05-15 01:30:00,906] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-05-15 01:30:01,079] [pool-1-thread-12] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-05-15 01:30:01,392] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-05-15 01:30:01,765] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-05-15 01:30:01,814] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-05-15 01:30:01,892] [pool-1-thread-10] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-05-15 01:30:06,182] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-05-15 01:30:06,670] [pool-1-thread-1] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-05-15 01:30:06,759] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-05-15 01:30:06,904] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-05-15 01:30:07,565] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-05-15 01:30:07,905] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-05-15 01:30:08,997] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-05-15 01:30:09,510] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-05-15 01:30:09,786] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-05-15 01:30:09,944] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-05-15 01:30:10,127] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-05-15 01:30:11,191] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-05-15 01:30:11,459] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-05-15 01:30:11,673] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-05-15 01:30:11,945] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-05-15 01:30:12,405] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-05-15 01:30:12,551] [pool-1-thread-2] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-05-15 01:30:12,907] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-05-15 01:30:13,513] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-05-15 01:30:13,879] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-05-15 01:30:13,996] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-05-15 01:30:14,077] [pool-1-thread-8] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-05-15 01:30:14,237] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-05-15 01:30:14,530] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-05-15 01:30:14,633] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-05-15 01:30:14,977] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-05-15 01:30:15,301] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-05-15 01:30:15,768] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-05-15 01:30:15,987] [pool-1-thread-9] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-05-15 01:30:40,631] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-05-15 01:30:40,793] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-05-15 01:30:41,092] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-05-15 01:30:41,283] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-05-15 01:30:41,428] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-05-15 01:30:42,955] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-05-15 01:30:43,108] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-05-15 01:30:43,214] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-05-15 01:30:43,424] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-05-15 01:30:43,514] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-05-15 01:30:43,819] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-05-15 01:30:44,747] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-05-15 01:30:45,044] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-05-15 01:30:45,112] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-05-15 01:30:45,311] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-05-15 01:30:45,611] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-05-15 01:30:45,814] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-05-15 01:30:45,916] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-05-15 01:30:46,217] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-05-15 01:30:47,165] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-05-15 01:30:47,738] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-05-15 01:30:47,800] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-05-15 01:30:48,069] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-05-15 01:30:48,222] [pool-1-thread-6] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-05-15 01:30:48,366] [pool-1-thread-11] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-05-15 01:30:49,032] [pool-1-thread-2] Initializing /data/qa-17335/1.oir:
[testng] [2024-05-15 01:30:49,190] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-05-15 01:30:49,403] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-05-15 01:30:49,457] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-05-15 01:30:49,587] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir:
[testng] [2024-05-15 01:30:50,840] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-05-15 01:30:51,202] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-05-15 01:30:51,827] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-05-15 01:30:52,056] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-05-15 01:30:52,260] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-05-15 01:30:52,486] [pool-1-thread-11] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-05-15 01:31:11,195] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-05-15 01:31:14,856] [pool-1-thread-5] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-05-15 01:31:15,462] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-05-15 01:31:15,860] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-05-15 01:31:15,945] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-05-15 01:31:16,036] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-05-15 01:31:16,104] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-05-15 01:31:16,793] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-05-15 01:31:17,115] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-05-15 01:31:17,462] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-05-15 01:31:17,952] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-05-15 01:31:18,159] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-05-15 01:31:18,474] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-05-15 01:31:18,931] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-05-15 01:31:19,331] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-05-15 01:31:19,860] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-05-15 01:31:20,344] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-05-15 01:31:20,935] [pool-1-thread-6] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-05-15 01:31:20,999] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-05-15 01:31:21,354] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-05-15 01:31:21,703] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-05-15 01:31:22,506] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-05-15 01:31:22,742] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-05-15 01:31:22,905] [pool-1-thread-1] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-05-15 01:31:23,565] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-05-15 01:31:24,020] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-05-15 01:31:24,185] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-05-15 01:31:24,343] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-05-15 01:31:24,507] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-05-15 01:31:24,679] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-05-15 01:31:24,932] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-05-15 01:31:25,459] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-05-15 01:31:25,579] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-05-15 01:31:25,936] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-05-15 01:31:26,120] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-05-15 01:31:26,361] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-05-15 01:31:26,759] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-05-15 01:31:26,919] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-05-15 01:31:27,244] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-05-15 01:31:30,621] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-05-15 01:31:30,726] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-05-15 01:31:30,930] [pool-1-thread-12] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-05-15 01:31:31,909] [pool-1-thread-1] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-05-15 01:31:32,096] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-05-15 01:31:32,544] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-05-15 01:31:32,646] [pool-1-thread-10] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-05-15 01:31:33,143] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-05-15 01:31:33,782] [pool-1-thread-2] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-05-15 01:31:34,207] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-05-15 01:31:34,831] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-05-15 01:31:35,466] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-05-15 01:31:39,919] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-05-15 01:31:40,033] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-05-15 01:31:40,936] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-05-15 01:31:41,161] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-05-15 01:31:41,563] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-05-15 01:31:41,633] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-05-15 01:31:42,668] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-05-15 01:31:43,023] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-05-15 01:31:43,120] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-05-15 01:31:44,523] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-05-15 01:31:44,972] [pool-1-thread-10] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-05-15 01:31:45,269] [pool-1-thread-12] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-05-15 01:31:45,712] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-05-15 01:31:47,877] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-05-15 01:31:48,339] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-05-15 01:31:48,550] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-05-15 01:31:49,362] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-05-15 01:31:49,778] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-05-15 01:31:52,330] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-05-15 01:31:54,854] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-05-15 01:31:55,211] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-05-15 01:31:55,862] [pool-1-thread-4] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-05-15 01:31:57,089] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-05-15 01:31:57,393] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-05-15 01:31:57,825] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-05-15 01:31:59,028] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-05-15 01:31:59,669] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-05-15 01:32:00,225] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-05-15 01:32:00,907] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-05-15 01:32:01,791] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-05-15 01:32:02,469] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 40 minutes 7 seconds
Finished: SUCCESS