Started by upstream project "BIOFORMATS-test-repo" build number 64
originally caused by:
Started by upstream project "Trigger" build number 71
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16195038098382221971.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9501_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:14,129 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:14,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:21:14,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:14,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:14,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:14,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:14,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:14,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:14,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:14,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:14,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:14,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:14,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:14,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:14,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:14,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:14,328 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:14,328 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:14,328 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:14,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:14,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:21:14,330 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:21:14,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-15 01:21:14,339] [main] java.version = 17.0.2
[testng] 01:21:14,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:14,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:14,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-15_01-21-14.log]
[testng] 01:21:14,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-15 01:21:14,388] [main] testng.directory = /data
[testng] [2024-05-15 01:21:14,388] [main] testng.configDirectory = /config
[testng] [2024-05-15 01:21:14,397] [main] testng.multiplier = 1.0
[testng] [2024-05-15 01:21:14,397] [main] testng.in-memory = false
[testng] [2024-05-15 01:21:14,398] [main] testng.allow-missing = false
[testng] [2024-05-15 01:21:14,398] [main] user.language = en
[testng] [2024-05-15 01:21:14,398] [main] user.country = ${user.country}
[testng] [2024-05-15 01:21:14,398] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-15 01:21:15,507] [main] ----------------------------------------
[testng] [2024-05-15 01:21:15,507] [main] Total files: 21
[testng] [2024-05-15 01:21:15,507] [main] Scan time: 1.109 s (52 ms/file)
[testng] [2024-05-15 01:21:15,507] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-15 01:21:17,621] [pool-1-thread-1] Initializing /data/stefan/001_q01.txt:
[testng] 01:21:17,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:17,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-15_01-21-17.log]
[testng] 01:21:17,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35ed82e9 - End of configuration.
[testng] [2024-05-15 01:21:17,676] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt:
[testng] 01:21:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:21:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-15_01-21-17.log]
[testng] 01:21:17,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ff798 - End of configuration.
[testng] [2024-05-15 01:21:17,784] [pool-1-thread-11] Initializing /data/stefan/001_q11.txt:
[testng] 01:21:17,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:21:17,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-15_01-21-17.log]
[testng] 01:21:17,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8c0c20 - End of configuration.
[testng] [2024-05-15 01:21:17,884] [pool-1-thread-10] Initializing /data/stefan/001_q05.txt:
[testng] 01:21:17,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:21:17,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-15_01-21-17.log]
[testng] 01:21:17,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7bd930 - End of configuration.
[testng] [2024-05-15 01:21:17,929] [pool-1-thread-9] Initializing /data/stefan/001_q04.txt:
[testng] 01:21:17,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:21:17,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-15_01-21-17.log]
[testng] 01:21:17,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69fbe0d6 - End of configuration.
[testng] [2024-05-15 01:21:17,974] [pool-1-thread-8] Initializing /data/stefan/001_q03.txt:
[testng] 01:21:17,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:17,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-15_01-21-17.log]
[testng] 01:21:17,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57b0bcdf - End of configuration.
[testng] [2024-05-15 01:21:18,010] [pool-1-thread-7] Initializing /data/stefan/001_q17.txt:
[testng] 01:21:18,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:18,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:18,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-15_01-21-18.log]
[testng] 01:21:18,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a075a73 - End of configuration.
[testng] [2024-05-15 01:21:18,111] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt:
[testng] 01:21:18,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:18,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:18,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-15_01-21-18.log]
[testng] 01:21:18,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e698575 - End of configuration.
[testng] [2024-05-15 01:21:18,140] [pool-1-thread-5] Initializing /data/stefan/001_q08.txt:
[testng] 01:21:18,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:18,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:18,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-15_01-21-18.log]
[testng] 01:21:18,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@269d0770 - End of configuration.
[testng] [2024-05-15 01:21:18,211] [pool-1-thread-4] Initializing /data/stefan/001_q15.txt:
[testng] 01:21:18,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:18,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:18,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-15_01-21-18.log]
[testng] 01:21:18,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6317f7e6 - End of configuration.
[testng] [2024-05-15 01:21:18,245] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt:
[testng] 01:21:18,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:18,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:18,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-15_01-21-18.log]
[testng] 01:21:18,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d557531 - End of configuration.
[testng] [2024-05-15 01:21:18,312] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt:
[testng] 01:21:18,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:18,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:18,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-15_01-21-18.log]
[testng] 01:21:18,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5edd75f9 - End of configuration.
[testng] [2024-05-15 01:21:20,617] [pool-1-thread-2] Initializing /data/stefan/001_q10.txt:
[testng] [2024-05-15 01:21:20,669] [pool-1-thread-4] Initializing /data/stefan/001_q14.txt:
[testng] [2024-05-15 01:21:20,698] [pool-1-thread-1] Initializing /data/stefan/001_q07.txt:
[testng] [2024-05-15 01:21:20,750] [pool-1-thread-9] Initializing /data/stefan/001_q18.txt:
[testng] [2024-05-15 01:21:20,815] [pool-1-thread-3] Initializing /data/stefan/001_q13.txt:
[testng] [2024-05-15 01:21:20,854] [pool-1-thread-5] Initializing /data/stefan/001_q16.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS