Started by upstream project "BIOFORMATS-test-repo" build number 7
originally caused by:
Started by upstream project "Trigger" build number 10
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15945678384525902799.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_969_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:18:57,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:18:57,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 00:18:57,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:18:57,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:18:57,444 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:18:57,444 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:18:57,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:18:57,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:18:57,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:18:57,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:18:57,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:18:57,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:18:57,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:18:57,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:18:57,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:18:57,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:18:57,630 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:18:57,630 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:18:57,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:18:57,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:18:57,631 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 00:18:57,631 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 00:18:57,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-21 00:18:57,640] [main] java.version = 21
[testng] 00:18:57,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:18:57,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:18:57,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_00-18-57.log]
[testng] 00:18:57,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-03-21 00:18:57,685] [main] testng.directory = /data
[testng] [2024-03-21 00:18:57,686] [main] testng.configDirectory = /config
[testng] [2024-03-21 00:18:57,694] [main] testng.multiplier = 1.0
[testng] [2024-03-21 00:18:57,695] [main] testng.in-memory = false
[testng] [2024-03-21 00:18:57,695] [main] testng.allow-missing = false
[testng] [2024-03-21 00:18:57,695] [main] user.language = en
[testng] [2024-03-21 00:18:57,695] [main] user.country = ${user.country}
[testng] [2024-03-21 00:18:57,695] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-21 00:18:58,083] [main] ----------------------------------------
[testng] [2024-03-21 00:18:58,083] [main] Total files: 21
[testng] [2024-03-21 00:18:58,083] [main] Scan time: 0.388 s (18 ms/file)
[testng] [2024-03-21 00:18:58,083] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-21 00:19:01,747] [pool-1-thread-1] Initializing /data/venu/Kontrolle0019.lim:
[testng] 00:19:01,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:19:01,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:01,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_00-19-01.log]
[testng] 00:19:01,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed423c0 - End of configuration.
[testng] [2024-03-21 00:19:01,830] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim:
[testng] 00:19:01,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:19:01,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:01,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_00-19-01.log]
[testng] 00:19:01,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db50563 - End of configuration.
[testng] [2024-03-21 00:19:01,925] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim:
[testng] 00:19:01,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:19:01,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:01,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_00-19-01.log]
[testng] 00:19:01,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3915a9cc - End of configuration.
[testng] [2024-03-21 00:19:01,994] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim:
[testng] 00:19:01,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:19:01,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:01,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_00-19-01.log]
[testng] 00:19:01,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3680dccc - End of configuration.
[testng] [2024-03-21 00:19:02,124] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim:
[testng] 00:19:02,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:19:02,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_00-19-02.log]
[testng] 00:19:02,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c467d2b - End of configuration.
[testng] [2024-03-21 00:19:02,198] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim:
[testng] 00:19:02,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:19:02,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_00-19-02.log]
[testng] 00:19:02,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d90c5df - End of configuration.
[testng] [2024-03-21 00:19:02,285] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim:
[testng] 00:19:02,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:19:02,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_00-19-02.log]
[testng] 00:19:02,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration.
[testng] [2024-03-21 00:19:02,366] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim:
[testng] 00:19:02,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:19:02,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_00-19-02.log]
[testng] 00:19:02,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1159b04 - End of configuration.
[testng] [2024-03-21 00:19:02,485] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim:
[testng] 00:19:02,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:19:02,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_00-19-02.log]
[testng] 00:19:02,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25329239 - End of configuration.
[testng] [2024-03-21 00:19:02,611] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim:
[testng] 00:19:02,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:19:02,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_00-19-02.log]
[testng] 00:19:02,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63047687 - End of configuration.
[testng] [2024-03-21 00:19:02,691] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim:
[testng] 00:19:02,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:19:02,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_00-19-02.log]
[testng] 00:19:02,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53afc15b - End of configuration.
[testng] [2024-03-21 00:19:02,782] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim:
[testng] 00:19:02,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:19:02,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:19:02,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_00-19-02.log]
[testng] 00:19:02,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration.
[testng] [2024-03-21 00:19:05,946] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim:
[testng] [2024-03-21 00:19:06,144] [pool-1-thread-11] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-03-21 00:19:06,223] [pool-1-thread-3] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-03-21 00:19:06,304] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim:
[testng] [2024-03-21 00:19:06,378] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim:
[testng] [2024-03-21 00:19:06,519] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2024-03-21 00:19:06,602] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim:
[testng] [2024-03-21 00:19:06,696] [pool-1-thread-8] Initializing /data/venu/Kontrolle0009.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS