Started by upstream project "BIOFORMATS-test-repo" build number 1
originally caused by:
Started by upstream project "Trigger" build number 1
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5170575708566984958.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_97_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/devspace/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 16:51:27,341 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 16:51:27,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 16:51:27,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 16:51:27,343 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 16:51:27,344 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 16:51:27,344 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 16:51:27,344 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 16:51:27,344 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 16:51:27,345 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 16:51:27,345 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 16:51:27,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 16:51:27,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 16:51:27,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 16:51:27,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 16:51:27,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 16:51:27,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 16:51:27,537 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 16:51:27,537 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 16:51:27,537 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 16:51:27,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 16:51:27,538 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 16:51:27,538 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 16:51:27,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-14 16:51:27,547] [main] java.version = 21
[testng] 16:51:27,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 16:51:27,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:27,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-14_16-51-27.log]
[testng] 16:51:27,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-03-14 16:51:27,593] [main] testng.directory = /data
[testng] [2024-03-14 16:51:27,593] [main] testng.configDirectory = /config
[testng] [2024-03-14 16:51:27,602] [main] testng.multiplier = 1.0
[testng] [2024-03-14 16:51:27,602] [main] testng.in-memory = false
[testng] [2024-03-14 16:51:27,602] [main] testng.allow-missing = false
[testng] [2024-03-14 16:51:27,602] [main] user.language = en
[testng] [2024-03-14 16:51:27,602] [main] user.country = ${user.country}
[testng] [2024-03-14 16:51:27,602] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-14 16:51:27,944] [main] ----------------------------------------
[testng] [2024-03-14 16:51:27,945] [main] Total files: 19
[testng] [2024-03-14 16:51:27,945] [main] Scan time: 0.341 s (17 ms/file)
[testng] [2024-03-14 16:51:27,945] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-14 16:51:30,382] [pool-1-thread-1] Initializing /data/samples/200R PICT0002.MRW:
[testng] 16:51:30,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 16:51:30,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-14_16-51-30.log]
[testng] 16:51:30,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@164f9bf3 - End of configuration.
[testng] [2024-03-14 16:51:30,450] [pool-1-thread-12] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 16:51:30,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 16:51:30,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-14_16-51-30.log]
[testng] 16:51:30,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f19cb9 - End of configuration.
[testng] [2024-03-14 16:51:30,493] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 16:51:30,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 16:51:30,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-14_16-51-30.log]
[testng] 16:51:30,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa74a6 - End of configuration.
[testng] [2024-03-14 16:51:30,545] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 16:51:30,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 16:51:30,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-14_16-51-30.log]
[testng] 16:51:30,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e4f7ec1 - End of configuration.
[testng] [2024-03-14 16:51:30,626] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] 16:51:30,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 16:51:30,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-14_16-51-30.log]
[testng] 16:51:30,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a182810 - End of configuration.
[testng] [2024-03-14 16:51:30,697] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] 16:51:30,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 16:51:30,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-14_16-51-30.log]
[testng] 16:51:30,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dca131 - End of configuration.
[testng] [2024-03-14 16:51:30,762] [pool-1-thread-7] Initializing /data/samples/400R PICT0003.MRW:
[testng] 16:51:30,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 16:51:30,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-14_16-51-30.log]
[testng] 16:51:30,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129f7a31 - End of configuration.
[testng] [2024-03-14 16:51:30,818] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 16:51:30,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 16:51:30,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-14_16-51-30.log]
[testng] 16:51:30,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3a6287 - End of configuration.
[testng] [2024-03-14 16:51:30,907] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 16:51:30,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 16:51:30,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:30,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-14_16-51-30.log]
[testng] 16:51:30,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd19008 - End of configuration.
[testng] [2024-03-14 16:51:31,041] [pool-1-thread-4] Initializing /data/samples/800R PICT0010.MRW:
[testng] 16:51:31,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 16:51:31,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:31,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-14_16-51-31.log]
[testng] 16:51:31,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb29507 - End of configuration.
[testng] [2024-03-14 16:51:31,142] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng] 16:51:31,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 16:51:31,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:31,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-14_16-51-31.log]
[testng] 16:51:31,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e630fda - End of configuration.
[testng] [2024-03-14 16:51:31,234] [pool-1-thread-2] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 16:51:31,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 16:51:31,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:51:31,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-14_16-51-31.log]
[testng] 16:51:31,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@644f4ccc - End of configuration.
[testng] [2024-03-14 16:51:36,330] [pool-1-thread-2] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2024-03-14 16:51:36,361] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2024-03-14 16:51:36,412] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-03-14 16:51:36,451] [pool-1-thread-9] Initializing /data/samples/100R PICT0001.MRW:
[testng] [2024-03-14 16:51:36,550] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-03-14 16:51:36,651] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] [2024-03-14 16:51:36,694] [pool-1-thread-8] Initializing /data/samples/1600R PICT0005.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS