Started by upstream project "BIOFORMATS-test-repo" build number 65
originally caused by:
Started by upstream project "Trigger" build number 72
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6073055169115103526.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9766_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:16:37,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:16:37,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:16:38,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:16:38,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:16:38,007 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:16:38,007 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:16:38,007 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:16:38,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:16:38,008 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration.
[testng] 02:16:38,009 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point
[testng] 02:16:38,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 491 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-16 02:16:38,031] [main] java.version = 21
[testng] 02:16:38,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:16:38,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:38,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-16_02-16-38.log]
[testng] 02:16:38,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-05-16 02:16:38,082] [main] testng.directory = /data
[testng] [2024-05-16 02:16:38,083] [main] testng.configDirectory = /config
[testng] [2024-05-16 02:16:38,126] [main] testng.multiplier = 1.0
[testng] [2024-05-16 02:16:38,128] [main] testng.in-memory = false
[testng] [2024-05-16 02:16:38,128] [main] testng.allow-missing = false
[testng] [2024-05-16 02:16:38,128] [main] user.language = en
[testng] [2024-05-16 02:16:38,128] [main] user.country = ${user.country}
[testng] [2024-05-16 02:16:38,128] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-16 02:16:46,471] [main] ----------------------------------------
[testng] [2024-05-16 02:16:46,471] [main] Total files: 67
[testng] [2024-05-16 02:16:46,471] [main] Scan time: 8.342 s (124 ms/file)
[testng] [2024-05-16 02:16:46,471] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 59 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-16 02:17:12,550] [pool-1-thread-1] Initializing /data/generated/10-31_E_t0006.ims:
[testng] 02:17:12,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:17:12,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-16_02-17-12.log]
[testng] 02:17:12,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f3e2635 - End of configuration.
[testng] [2024-05-16 02:17:12,577] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal.ims:
[testng] 02:17:12,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:17:12,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-16_02-17-12.log]
[testng] 02:17:12,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df014e9 - End of configuration.
[testng] [2024-05-16 02:17:12,640] [pool-1-thread-11] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims:
[testng] 02:17:12,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:17:12,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-16_02-17-12.log]
[testng] 02:17:12,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6451ca10 - End of configuration.
[testng] [2024-05-16 02:17:12,732] [pool-1-thread-10] Initializing /data/generated/MF-2CH-Z-T.ims:
[testng] 02:17:12,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:17:12,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-16_02-17-12.log]
[testng] 02:17:12,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7704d704 - End of configuration.
[testng] [2024-05-16 02:17:12,748] [pool-1-thread-9] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved.ims:
[testng] 02:17:12,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:17:12,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-16_02-17-12.log]
[testng] 02:17:12,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cff24c9 - End of configuration.
[testng] [2024-05-16 02:17:12,807] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0013.ims:
[testng] 02:17:12,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:17:12,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-16_02-17-12.log]
[testng] 02:17:12,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b58b62e - End of configuration.
[testng] [2024-05-16 02:17:12,824] [pool-1-thread-7] Initializing /data/qa-17839/Fusion _Stack.ims:
[testng] 02:17:12,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:17:12,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-16_02-17-12.log]
[testng] 02:17:12,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7253a6a1 - End of configuration.
[testng] [2024-05-16 02:17:12,891] [pool-1-thread-6] Initializing /data/public/eliana/retina_large.ims:
[testng] 02:17:12,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:17:12,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-16_02-17-12.log]
[testng] 02:17:12,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308cd3e3 - End of configuration.
[testng] [2024-05-16 02:17:12,928] [pool-1-thread-5] Initializing /data/jason/imaris_5_5_demoimages/PtK2Cell.ims:
[testng] 02:17:12,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:17:12,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-16_02-17-12.log]
[testng] 02:17:12,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e114881 - End of configuration.
[testng] [2024-05-16 02:17:12,966] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0010.ims:
[testng] 02:17:12,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:17:12,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-16_02-17-12.log]
[testng] 02:17:12,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e715bec - End of configuration.
[testng] [2024-05-16 02:17:12,981] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0014.ims:
[testng] 02:17:12,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:17:12,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:12,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-16_02-17-12.log]
[testng] 02:17:12,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23ac65bc - End of configuration.
[testng] [2024-05-16 02:17:13,001] [pool-1-thread-2] Initializing /data/qa-17515/Organoid=1.ims:
[testng] 02:17:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:17:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:13,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-16_02-17-13.log]
[testng] 02:17:13,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e28d0f - End of configuration.
BUILD SUCCESSFUL
Total time: 2 minutes 54 seconds
Finished: SUCCESS