Started by upstream project "BIOFORMATS-test-repo" build number 65
originally caused by:
Started by upstream project "Trigger" build number 72
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4021781428691161932.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9782_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:27:42,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:27:42,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:27:42,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:27:42,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:27:42,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:27:42,534 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:27:42,534 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:27:42,534 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:27:42,534 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration.
[testng] 02:27:42,535 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point
[testng] 02:27:42,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 412 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-16 02:27:42,571] [main] java.version = 21
[testng] 02:27:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:27:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:42,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-16_02-27-42.log]
[testng] 02:27:42,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-05-16 02:27:42,629] [main] testng.directory = /data
[testng] [2024-05-16 02:27:42,629] [main] testng.configDirectory = /config
[testng] [2024-05-16 02:27:42,651] [main] testng.multiplier = 1.0
[testng] [2024-05-16 02:27:42,652] [main] testng.in-memory = false
[testng] [2024-05-16 02:27:42,652] [main] testng.allow-missing = false
[testng] [2024-05-16 02:27:42,652] [main] user.language = en
[testng] [2024-05-16 02:27:42,653] [main] user.country = ${user.country}
[testng] [2024-05-16 02:27:42,653] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-16 02:27:43,272] [main] ----------------------------------------
[testng] [2024-05-16 02:27:43,272] [main] Total files: 18
[testng] [2024-05-16 02:27:43,272] [main] Scan time: 0.619 s (34 ms/file)
[testng] [2024-05-16 02:27:43,273] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-16 02:27:45,208] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 02:27:45,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:27:45,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-16_02-27-45.log]
[testng] 02:27:45,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee64105 - End of configuration.
[testng] [2024-05-16 02:27:45,245] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 02:27:45,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:27:45,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-16_02-27-45.log]
[testng] 02:27:45,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c652f64 - End of configuration.
[testng] [2024-05-16 02:27:45,281] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 02:27:45,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:27:45,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-16_02-27-45.log]
[testng] 02:27:45,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd45fd8 - End of configuration.
[testng] [2024-05-16 02:27:45,307] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd:
[testng] 02:27:45,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:27:45,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-16_02-27-45.log]
[testng] 02:27:45,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2175c67f - End of configuration.
[testng] [2024-05-16 02:27:45,339] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 02:27:45,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:27:45,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-16_02-27-45.log]
[testng] 02:27:45,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67100144 - End of configuration.
[testng] [2024-05-16 02:27:45,377] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 02:27:45,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:27:45,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-16_02-27-45.log]
[testng] 02:27:45,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration.
[testng] [2024-05-16 02:27:45,422] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd:
[testng] 02:27:45,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:27:45,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-16_02-27-45.log]
[testng] 02:27:45,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2ff85f - End of configuration.
[testng] [2024-05-16 02:27:45,456] [pool-1-thread-6] Initializing /data/ascb/607x.psd:
[testng] 02:27:45,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:27:45,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-16_02-27-45.log]
[testng] 02:27:45,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31bafdac - End of configuration.
[testng] [2024-05-16 02:27:45,517] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 02:27:45,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:27:45,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-16_02-27-45.log]
[testng] 02:27:45,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765e3ab8 - End of configuration.
[testng] [2024-05-16 02:27:45,604] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd:
[testng] 02:27:45,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:27:45,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-16_02-27-45.log]
[testng] 02:27:45,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b4b98bf - End of configuration.
[testng] [2024-05-16 02:27:45,759] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 02:27:45,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:27:45,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-16_02-27-45.log]
[testng] 02:27:45,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf389d5 - End of configuration.
[testng] [2024-05-16 02:27:45,951] [pool-1-thread-2] Initializing /data/ascb/423.psd:
[testng] 02:27:45,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:27:45,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:27:45,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-16_02-27-45.log]
[testng] 02:27:45,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76280d78 - End of configuration.
[testng] [2024-05-16 02:27:50,764] [pool-1-thread-10] Initializing /data/misc/glossy_orbs.psd:
[testng] [2024-05-16 02:27:50,777] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] [2024-05-16 02:27:50,802] [pool-1-thread-11] Initializing /data/cris/house.tif:
[testng] [2024-05-16 02:27:50,844] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd:
[testng] [2024-05-16 02:27:50,864] [pool-1-thread-1] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-05-16 02:27:50,885] [pool-1-thread-3] Initializing /data/misc/smilie.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 43 seconds
Finished: SUCCESS