Started by upstream project "BIOFORMATS-test-repo" build number 7
originally caused by:
Started by upstream project "Trigger" build number 10
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4203354183048661735.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_981_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:23:38,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:23:38,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 00:23:38,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:38,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:38,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:23:38,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:23:38,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:23:38,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:38,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:38,323 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:23:38,323 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:23:38,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:23:38,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:23:38,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:23:38,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:23:38,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:23:38,622 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:23:38,623 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:23:38,623 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:23:38,623 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:23:38,623 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 00:23:38,624 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 00:23:38,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 302 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-21 00:23:38,635] [main] java.version = 21
[testng] 00:23:38,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:23:38,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:38,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_00-23-38.log]
[testng] 00:23:38,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-03-21 00:23:38,690] [main] testng.directory = /data
[testng] [2024-03-21 00:23:38,691] [main] testng.configDirectory = /config
[testng] [2024-03-21 00:23:38,711] [main] testng.multiplier = 1.0
[testng] [2024-03-21 00:23:38,712] [main] testng.in-memory = false
[testng] [2024-03-21 00:23:38,713] [main] testng.allow-missing = false
[testng] [2024-03-21 00:23:38,713] [main] user.language = en
[testng] [2024-03-21 00:23:38,713] [main] user.country = ${user.country}
[testng] [2024-03-21 00:23:38,713] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-21 00:24:38,098] [main] ----------------------------------------
[testng] [2024-03-21 00:24:38,098] [main] Total files: 226
[testng] [2024-03-21 00:24:38,099] [main] Scan time: 59.385 s (262 ms/file)
[testng] [2024-03-21 00:24:38,100] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-21 00:25:15,055] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL:
[testng] 00:25:15,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:25:15,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_00-25-15.log]
[testng] 00:25:15,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f551120 - End of configuration.
[testng] [2024-03-21 00:25:15,095] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL:
[testng] 00:25:15,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:25:15,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_00-25-15.log]
[testng] 00:25:15,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44191698 - End of configuration.
[testng] [2024-03-21 00:25:15,124] [pool-1-thread-11] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 00:25:15,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:25:15,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_00-25-15.log]
[testng] 00:25:15,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b40e4ec - End of configuration.
[testng] [2024-03-21 00:25:15,156] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL:
[testng] 00:25:15,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:25:15,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_00-25-15.log]
[testng] 00:25:15,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@553f1812 - End of configuration.
[testng] [2024-03-21 00:25:15,186] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] 00:25:15,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:25:15,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_00-25-15.log]
[testng] 00:25:15,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c43608 - End of configuration.
[testng] [2024-03-21 00:25:15,379] [pool-1-thread-8] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 00:25:15,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:25:15,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_00-25-15.log]
[testng] 00:25:15,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@543ab3f - End of configuration.
[testng] [2024-03-21 00:25:15,411] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 00:25:15,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:25:15,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_00-25-15.log]
[testng] 00:25:15,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e21ad8d - End of configuration.
[testng] [2024-03-21 00:25:15,511] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] 00:25:15,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:25:15,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_00-25-15.log]
[testng] 00:25:15,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8e3087 - End of configuration.
[testng] [2024-03-21 00:25:15,541] [pool-1-thread-5] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 00:25:15,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:25:15,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_00-25-15.log]
[testng] 00:25:15,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4934f937 - End of configuration.
[testng] [2024-03-21 00:25:15,789] [pool-1-thread-4] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:25:15,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:25:15,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_00-25-15.log]
[testng] 00:25:15,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a0187a9 - End of configuration.
[testng] [2024-03-21 00:25:15,812] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 00:25:15,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:25:15,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_00-25-15.log]
[testng] 00:25:15,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7639e7f0 - End of configuration.
[testng] [2024-03-21 00:25:15,918] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:25:15,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:25:15,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_00-25-15.log]
[testng] 00:25:15,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a2e67a - End of configuration.
[testng] [2024-03-21 00:25:18,141] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-03-21 00:25:18,169] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-03-21 00:25:18,284] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-03-21 00:25:18,333] [pool-1-thread-4] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-03-21 00:25:18,466] [pool-1-thread-1] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-03-21 00:25:18,482] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-03-21 00:25:18,567] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-03-21 00:25:18,649] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-03-21 00:25:18,683] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-03-21 00:25:18,701] [pool-1-thread-5] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-03-21 00:25:18,711] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-03-21 00:25:19,426] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-03-21 00:25:19,472] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] [2024-03-21 00:25:19,618] [pool-1-thread-1] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-03-21 00:25:19,693] [pool-1-thread-6] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-03-21 00:25:19,883] [pool-1-thread-3] Initializing /data/iplab/Color Histology.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 48 seconds
Finished: SUCCESS