Started by upstream project "BIOFORMATS-test-repo" build number 66
originally caused by:
Started by upstream project "Trigger" build number 74
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3572324332741028878.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9835_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:54:36,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:54:36,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 07:54:36,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:54:36,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:54:36,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:54:36,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:54:36,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:54:36,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:54:36,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:54:36,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:54:36,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:54:36,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:54:37,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:54:37,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:54:37,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:54:37,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:54:37,234 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:54:37,234 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:54:37,234 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:54:37,235 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:54:37,235 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 07:54:37,236 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 07:54:37,236 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-17 07:54:37,246] [main] java.version = 1.8.0_342
[testng] 07:54:37,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:54:37,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:54:37,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_07-54-37.log]
[testng] 07:54:37,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-17 07:54:37,297] [main] testng.directory = /data
[testng] [2024-05-17 07:54:37,297] [main] testng.configDirectory = /config
[testng] [2024-05-17 07:54:37,310] [main] testng.multiplier = 1.0
[testng] [2024-05-17 07:54:37,310] [main] testng.in-memory = false
[testng] [2024-05-17 07:54:37,311] [main] testng.allow-missing = false
[testng] [2024-05-17 07:54:37,311] [main] user.language = en
[testng] [2024-05-17 07:54:37,311] [main] user.country = ${user.country}
[testng] [2024-05-17 07:54:37,311] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-17 07:54:37,759] [main] ----------------------------------------
[testng] [2024-05-17 07:54:37,759] [main] Total files: 22
[testng] [2024-05-17 07:54:37,759] [main] Scan time: 0.448 s (20 ms/file)
[testng] [2024-05-17 07:54:37,759] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-17 07:55:25,569] [pool-1-thread-1] Initializing /data/imagej/3D_Chromosome.zip:
[testng] 07:55:25,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:55:25,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:25,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_07-55-25.log]
[testng] 07:55:25,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504cef0e - End of configuration.
[testng] [2024-05-17 07:55:25,940] [pool-1-thread-12] Initializing /data/imagej/watershed-animation.zip:
[testng] 07:55:25,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:55:25,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:25,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_07-55-25.log]
[testng] 07:55:25,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50473109 - End of configuration.
[testng] [2024-05-17 07:55:26,045] [pool-1-thread-11] Initializing /data/imagej/scala-media.zip:
[testng] 07:55:26,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:55:26,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:26,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_07-55-26.log]
[testng] 07:55:26,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9b3b7e - End of configuration.
[testng] [2024-05-17 07:55:26,140] [pool-1-thread-10] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 07:55:26,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:55:26,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:26,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_07-55-26.log]
[testng] 07:55:26,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fe0c3c3 - End of configuration.
[testng] [2024-05-17 07:55:26,322] [pool-1-thread-9] Initializing /data/imagej/mri-stack.zip:
[testng] 07:55:26,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:55:26,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:26,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_07-55-26.log]
[testng] 07:55:26,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b99a4c1 - End of configuration.
[testng] [2024-05-17 07:55:26,543] [pool-1-thread-8] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] 07:55:26,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:55:26,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:26,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_07-55-26.log]
[testng] 07:55:26,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbc2aec - End of configuration.
[testng] [2024-05-17 07:55:32,279] [pool-1-thread-7] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] 07:55:32,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:55:32,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:32,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_07-55-32.log]
[testng] 07:55:32,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dee9026 - End of configuration.
[testng] [2024-05-17 07:55:33,454] [pool-1-thread-6] Initializing /data/imagej/m51.zip:
[testng] 07:55:33,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:55:33,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:33,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_07-55-33.log]
[testng] 07:55:33,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270f0323 - End of configuration.
[testng] [2024-05-17 07:55:33,565] [pool-1-thread-5] Initializing /data/imagej/se3.zip:
[testng] 07:55:33,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:55:33,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:33,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_07-55-33.log]
[testng] 07:55:33,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434b4bc1 - End of configuration.
[testng] [2024-05-17 07:55:37,518] [pool-1-thread-4] Initializing /data/imagej/hela-cells.zip:
[testng] 07:55:37,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:55:37,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:37,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_07-55-37.log]
[testng] 07:55:37,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4825fcbf - End of configuration.
[testng] [2024-05-17 07:55:38,544] [pool-1-thread-3] Initializing /data/imagej/FluorescentCells.zip:
[testng] 07:55:38,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:55:38,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:38,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_07-55-38.log]
[testng] 07:55:38,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c81910 - End of configuration.
[testng] [2024-05-17 07:55:38,719] [pool-1-thread-2] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 07:55:38,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:55:38,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:55:38,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_07-55-38.log]
[testng] 07:55:38,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e92f27 - End of configuration.
[testng] [2024-05-17 07:55:47,501] [pool-1-thread-11] Initializing /data/samples/sdub.zip:
[testng] [2024-05-17 07:55:48,031] [pool-1-thread-6] Initializing /data/imagej/confocal-stack.zip:
[testng] [2024-05-17 07:55:56,455] [pool-1-thread-12] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] [2024-05-17 07:55:58,894] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip:
[testng] [2024-05-17 07:56:01,083] [pool-1-thread-3] Initializing /data/imagej/RatBrain.zip:
[testng] [2024-05-17 07:56:02,244] [pool-1-thread-9] Initializing /data/imagej/fat-cells.zip:
[testng] [2024-05-17 07:56:07,634] [pool-1-thread-1] Initializing /data/imagej/flybrain.zip:
[testng] [2024-05-17 07:56:19,823] [pool-1-thread-3] Initializing /data/imagej/xrays.zip:
[testng] [2024-05-17 07:56:20,509] [pool-1-thread-11] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] [2024-05-17 07:56:22,752] [pool-1-thread-3] Initializing /data/imagej/confocal-series.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 29 seconds
Finished: SUCCESS