Started by upstream project "BIOFORMATS-test-repo" build number 66
originally caused by:
Started by upstream project "Trigger" build number 74
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9495838019104291973.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9840_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:56:50,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:56:50,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 07:56:50,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:56:50,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:56:50,370 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:56:50,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:56:50,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:56:50,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:56:50,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:56:50,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:56:50,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:56:50,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:56:50,741 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:56:50,741 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:56:50,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:56:50,742 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:56:50,742 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 07:56:50,743 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 07:56:50,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 373 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-17 07:56:50,753] [main] java.version = 1.8.0_342
[testng] 07:56:50,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:56:50,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:56:50,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_07-56-50.log]
[testng] 07:56:50,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-17 07:56:50,810] [main] testng.directory = /data
[testng] [2024-05-17 07:56:50,811] [main] testng.configDirectory = /config
[testng] [2024-05-17 07:56:50,825] [main] testng.multiplier = 1.0
[testng] [2024-05-17 07:56:50,826] [main] testng.in-memory = false
[testng] [2024-05-17 07:56:50,826] [main] testng.allow-missing = false
[testng] [2024-05-17 07:56:50,826] [main] user.language = en
[testng] [2024-05-17 07:56:50,826] [main] user.country = ${user.country}
[testng] [2024-05-17 07:56:50,826] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-17 07:57:02,879] [main] ----------------------------------------
[testng] [2024-05-17 07:57:02,879] [main] Total files: 226
[testng] [2024-05-17 07:57:02,879] [main] Scan time: 12.052 s (53 ms/file)
[testng] [2024-05-17 07:57:02,879] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-17 07:57:10,872] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 07:57:10,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:57:10,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:10,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_07-57-10.log]
[testng] 07:57:10,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475d920d - End of configuration.
[testng] [2024-05-17 07:57:10,924] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] 07:57:10,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:57:10,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:10,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_07-57-10.log]
[testng] 07:57:10,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e084cb - End of configuration.
[testng] [2024-05-17 07:57:10,939] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 07:57:10,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:57:10,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:10,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_07-57-10.log]
[testng] 07:57:10,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687ea24e - End of configuration.
[testng] [2024-05-17 07:57:10,970] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL:
[testng] 07:57:10,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:57:10,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:10,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_07-57-10.log]
[testng] 07:57:10,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595efc6f - End of configuration.
[testng] [2024-05-17 07:57:10,978] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 07:57:10,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:57:10,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:10,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_07-57-10.log]
[testng] 07:57:10,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a5a30f1 - End of configuration.
[testng] [2024-05-17 07:57:11,039] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif:
[testng] 07:57:11,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:57:11,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_07-57-11.log]
[testng] 07:57:11,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5456e28f - End of configuration.
[testng] [2024-05-17 07:57:11,085] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 07:57:11,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:57:11,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_07-57-11.log]
[testng] 07:57:11,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238e95e4 - End of configuration.
[testng] [2024-05-17 07:57:11,118] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 07:57:11,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:57:11,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_07-57-11.log]
[testng] 07:57:11,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9d52bc - End of configuration.
[testng] [2024-05-17 07:57:11,140] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 07:57:11,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:57:11,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_07-57-11.log]
[testng] 07:57:11,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c6ce2d - End of configuration.
[testng] [2024-05-17 07:57:11,218] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL:
[testng] 07:57:11,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:57:11,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_07-57-11.log]
[testng] 07:57:11,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dea89e - End of configuration.
[testng] [2024-05-17 07:57:11,226] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 07:57:11,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:57:11,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_07-57-11.log]
[testng] 07:57:11,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@389d3a4b - End of configuration.
[testng] [2024-05-17 07:57:11,232] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 07:57:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:57:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:57:11,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_07-57-11.log]
[testng] 07:57:11,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2422e094 - End of configuration.
[testng] [2024-05-17 07:57:13,837] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-05-17 07:57:13,915] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-05-17 07:57:13,962] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-05-17 07:57:13,974] [pool-1-thread-11] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-05-17 07:57:13,981] [pool-1-thread-10] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-05-17 07:57:14,003] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-05-17 07:57:14,096] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-05-17 07:57:14,103] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-05-17 07:57:14,109] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-05-17 07:57:14,120] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-05-17 07:57:14,128] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-05-17 07:57:14,505] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-05-17 07:57:14,515] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-05-17 07:57:14,578] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-05-17 07:57:14,632] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-05-17 07:57:14,787] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 30 seconds
Finished: SUCCESS