Started by upstream project "BIOFORMATS-test-repo" build number 66
originally caused by:
Started by upstream project "Trigger" build number 74
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1500056167294889278.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9851_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 08:00:12,858 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:00:12,858 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:00:12,858 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:00:12,859 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:00:12,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:00:12,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:00:12,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:00:13,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:00:13,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:00:13,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:00:13,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:00:13,260 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:00:13,260 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:00:13,260 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:00:13,261 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:00:13,261 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 08:00:13,262 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 08:00:13,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 403 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-17 08:00:13,276] [main] java.version = 1.8.0_342
[testng] 08:00:13,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:00:13,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:13,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-00-13.log]
[testng] 08:00:13,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-17 08:00:13,355] [main] testng.directory = /data
[testng] [2024-05-17 08:00:13,355] [main] testng.configDirectory = /config
[testng] [2024-05-17 08:00:13,375] [main] testng.multiplier = 1.0
[testng] [2024-05-17 08:00:13,376] [main] testng.in-memory = false
[testng] [2024-05-17 08:00:13,376] [main] testng.allow-missing = false
[testng] [2024-05-17 08:00:13,376] [main] user.language = en
[testng] [2024-05-17 08:00:13,376] [main] user.country = ${user.country}
[testng] [2024-05-17 08:00:13,377] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-17 08:00:13,954] [main] ----------------------------------------
[testng] [2024-05-17 08:00:13,955] [main] Total files: 21
[testng] [2024-05-17 08:00:13,955] [main] Scan time: 0.577 s (27 ms/file)
[testng] [2024-05-17 08:00:13,955] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-17 08:00:14,955] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA:
[testng] 08:00:14,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:00:14,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:14,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-00-14.log]
[testng] 08:00:14,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5811246c - End of configuration.
[testng] [2024-05-17 08:00:14,975] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA:
[testng] 08:00:14,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:00:14,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:14,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-00-14.log]
[testng] 08:00:14,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c634d8 - End of configuration.
[testng] [2024-05-17 08:00:15,016] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA:
[testng] 08:00:15,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:00:15,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-00-15.log]
[testng] 08:00:15,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4771db89 - End of configuration.
[testng] [2024-05-17 08:00:15,029] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA:
[testng] 08:00:15,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:00:15,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-00-15.log]
[testng] 08:00:15,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e77647 - End of configuration.
[testng] [2024-05-17 08:00:15,041] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA:
[testng] 08:00:15,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:00:15,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-00-15.log]
[testng] 08:00:15,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ddc1b4 - End of configuration.
[testng] [2024-05-17 08:00:15,053] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA:
[testng] 08:00:15,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:00:15,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-00-15.log]
[testng] 08:00:15,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331fe4f4 - End of configuration.
[testng] [2024-05-17 08:00:15,065] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA:
[testng] 08:00:15,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:00:15,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-00-15.log]
[testng] 08:00:15,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c1bfc8c - End of configuration.
[testng] [2024-05-17 08:00:15,079] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 08:00:15,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:00:15,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-00-15.log]
[testng] 08:00:15,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7648c1a7 - End of configuration.
[testng] [2024-05-17 08:00:15,088] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA:
[testng] 08:00:15,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:00:15,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-00-15.log]
[testng] 08:00:15,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2646bfd6 - End of configuration.
[testng] [2024-05-17 08:00:15,098] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA:
[testng] 08:00:15,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:00:15,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-00-15.log]
[testng] 08:00:15,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a1729e - End of configuration.
[testng] [2024-05-17 08:00:15,107] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA:
[testng] 08:00:15,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:00:15,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-00-15.log]
[testng] 08:00:15,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75ed69c2 - End of configuration.
[testng] [2024-05-17 08:00:15,119] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA:
[testng] 08:00:15,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:00:15,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:15,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-00-15.log]
[testng] 08:00:15,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e681e8 - End of configuration.
[testng] [2024-05-17 08:00:16,799] [pool-1-thread-2] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-05-17 08:00:16,808] [pool-1-thread-10] Initializing /data/samples/MARBLES.TGA:
[testng] [2024-05-17 08:00:16,824] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA:
[testng] [2024-05-17 08:00:16,831] [pool-1-thread-8] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-05-17 08:00:16,839] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA:
[testng] [2024-05-17 08:00:16,848] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-05-17 08:00:16,857] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA:
[testng] [2024-05-17 08:00:16,867] [pool-1-thread-11] Initializing /data/samples/UTC24.TGA:
[testng] [2024-05-17 08:00:16,876] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS