Started by upstream project "BIOFORMATS-test-repo" build number 66
originally caused by:
Started by upstream project "Trigger" build number 74
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4375575189692721863.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9856_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 08:02:59,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:02:59,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 08:02:59,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:02:59,951 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:02:59,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:02:59,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:02:59,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:02:59,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:02:59,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:02:59,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:02:59,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:02:59,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:03:00,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:03:00,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:03:00,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:03:00,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:03:00,263 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:03:00,263 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:03:00,263 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:03:00,264 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:03:00,264 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 08:03:00,265 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 08:03:00,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 313 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-17 08:03:00,276] [main] java.version = 1.8.0_342
[testng] 08:03:00,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:03:00,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:00,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-03-00.log]
[testng] 08:03:00,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-17 08:03:00,331] [main] testng.directory = /data
[testng] [2024-05-17 08:03:00,331] [main] testng.configDirectory = /config
[testng] [2024-05-17 08:03:00,344] [main] testng.multiplier = 1.0
[testng] [2024-05-17 08:03:00,344] [main] testng.in-memory = false
[testng] [2024-05-17 08:03:00,344] [main] testng.allow-missing = false
[testng] [2024-05-17 08:03:00,344] [main] user.language = en
[testng] [2024-05-17 08:03:00,344] [main] user.country = ${user.country}
[testng] [2024-05-17 08:03:00,345] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-17 08:03:01,091] [main] ----------------------------------------
[testng] [2024-05-17 08:03:01,091] [main] Total files: 14
[testng] [2024-05-17 08:03:01,091] [main] Scan time: 0.746 s (53 ms/file)
[testng] [2024-05-17 08:03:01,091] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-17 08:03:15,281] [pool-1-thread-1] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 08:03:15,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:03:15,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:15,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-03-15.log]
[testng] 08:03:15,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f91fa7 - End of configuration.
[testng] [2024-05-17 08:03:15,379] [pool-1-thread-12] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 08:03:15,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:03:15,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:15,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-03-15.log]
[testng] 08:03:15,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26252944 - End of configuration.
[testng] [2024-05-17 08:03:15,442] [pool-1-thread-11] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 08:03:15,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:03:15,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:15,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-03-15.log]
[testng] 08:03:15,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20de349 - End of configuration.
[testng] [2024-05-17 08:03:17,834] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 08:03:17,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:03:17,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:17,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-03-17.log]
[testng] 08:03:17,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b0f5c4 - End of configuration.
[testng] [2024-05-17 08:03:17,856] [pool-1-thread-9] Initializing /data/samples/Classic.tif:
[testng] 08:03:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:03:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:17,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-03-17.log]
[testng] 08:03:17,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a5de889 - End of configuration.
[testng] [2024-05-17 08:03:17,882] [pool-1-thread-8] Initializing /data/carlsen/Olympics8.tif:
[testng] 08:03:17,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:03:17,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:17,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-03-17.log]
[testng] 08:03:17,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2c2322 - End of configuration.
[testng] [2024-05-17 08:03:17,928] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong.tif:
[testng] 08:03:17,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:03:17,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:17,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-03-17.log]
[testng] 08:03:17,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@da29f52 - End of configuration.
[testng] [2024-05-17 08:03:17,954] [pool-1-thread-6] Initializing /data/samples/BigTIFF.tif:
[testng] 08:03:17,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:03:17,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:17,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-03-17.log]
[testng] 08:03:17,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a09b359 - End of configuration.
[testng] [2024-05-17 08:03:17,983] [pool-1-thread-5] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 08:03:17,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:03:17,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:17,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-03-17.log]
[testng] 08:03:17,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1315140d - End of configuration.
[testng] [2024-05-17 08:03:18,024] [pool-1-thread-4] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 08:03:18,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:03:18,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:18,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-03-18.log]
[testng] 08:03:18,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@364127bc - End of configuration.
[testng] [2024-05-17 08:03:18,048] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 08:03:18,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:03:18,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:18,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-03-18.log]
[testng] 08:03:18,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5313f6bb - End of configuration.
[testng] [2024-05-17 08:03:18,077] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 08:03:18,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:03:18,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:18,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-03-18.log]
[testng] 08:03:18,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15f3344e - End of configuration.
[testng] [2024-05-17 08:03:19,850] [pool-1-thread-6] Initializing /data/samples/BigTIFFMotorola.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 38 seconds
Finished: SUCCESS