Started by upstream project "BIOFORMATS-test-repo" build number 66
originally caused by:
Started by upstream project "Trigger" build number 74
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9395357146338171457.sh
+ '[' canon = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9857_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 08:03:38,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:03:38,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 08:03:38,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:03:38,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:03:38,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:03:38,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:03:38,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:03:38,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:03:38,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:03:38,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:03:38,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:03:38,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:03:39,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:03:39,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:03:39,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:03:39,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:03:39,108 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:03:39,108 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:03:39,108 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:03:39,109 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:03:39,109 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 08:03:39,110 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 08:03:39,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-17 08:03:39,120] [main] java.version = 1.8.0_342
[testng] 08:03:39,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:03:39,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:39,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-03-39.log]
[testng] 08:03:39,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-17 08:03:39,177] [main] testng.directory = /data
[testng] [2024-05-17 08:03:39,177] [main] testng.configDirectory = /config
[testng] [2024-05-17 08:03:39,190] [main] testng.multiplier = 1.0
[testng] [2024-05-17 08:03:39,191] [main] testng.in-memory = false
[testng] [2024-05-17 08:03:39,191] [main] testng.allow-missing = false
[testng] [2024-05-17 08:03:39,191] [main] user.language = en
[testng] [2024-05-17 08:03:39,191] [main] user.country = ${user.country}
[testng] [2024-05-17 08:03:39,191] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-17 08:03:41,306] [main] ----------------------------------------
[testng] [2024-05-17 08:03:41,306] [main] Total files: 13
[testng] [2024-05-17 08:03:41,306] [main] Scan time: 2.115 s (162 ms/file)
[testng] [2024-05-17 08:03:41,306] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-17 08:03:44,827] [pool-1-thread-1] Initializing /data/pete/Raw-THM.THM:
[testng] 08:03:44,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:03:44,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:44,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-03-44.log]
[testng] 08:03:44,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7632c48c - End of configuration.
[testng] [2024-05-17 08:03:45,057] [pool-1-thread-12] Initializing /data/pete/DNG-THM.THM:
[testng] 08:03:45,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:03:45,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:45,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-03-45.log]
[testng] 08:03:45,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ada94e - End of configuration.
[testng] [2024-05-17 08:03:45,094] [pool-1-thread-11] Initializing /data/pete/DNG-JPG.JPG:
[testng] 08:03:45,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:03:45,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:45,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-03-45.log]
[testng] 08:03:45,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134e006c - End of configuration.
[testng] [2024-05-17 08:03:45,248] [pool-1-thread-10] Initializing /data/pete/DNG-WAV.WAV:
[testng] 08:03:45,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:03:45,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:45,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-03-45.log]
[testng] 08:03:45,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67016edb - End of configuration.
[testng] [2024-05-17 08:03:45,280] [pool-1-thread-9] Initializing /data/cls/_N5Y0001.CR2:
[testng] 08:03:45,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:03:45,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:45,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-03-45.log]
[testng] 08:03:45,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7beb377c - End of configuration.
[testng] [2024-05-17 08:03:45,327] [pool-1-thread-8] Initializing /data/pete/Raw-JPG.JPG:
[testng] 08:03:45,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:03:45,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:45,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-03-45.log]
[testng] 08:03:45,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6756c024 - End of configuration.
[testng] [2024-05-17 08:03:46,053] [pool-1-thread-7] Initializing /data/pete/Raw-CR2.CR2:
[testng] 08:03:46,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:03:46,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:46,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-03-46.log]
[testng] 08:03:46,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5ca2ed - End of configuration.
[testng] [2024-05-17 08:03:46,292] [pool-1-thread-6] Initializing /data/kinor/2013_03_08_0808.CR2:
[testng] 08:03:46,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:03:46,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:46,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-03-46.log]
[testng] 08:03:46,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3586825 - End of configuration.
[testng] [2024-05-17 08:03:46,600] [pool-1-thread-5] Initializing /data/pete/Raw-WAV.WAV:
[testng] 08:03:46,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:03:46,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:46,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-03-46.log]
[testng] 08:03:46,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250da9f3 - End of configuration.
[testng] [2024-05-17 08:03:47,352] [pool-1-thread-4] Initializing /data/pete/Learning to Fly.JPG:
[testng] 08:03:47,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:03:47,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:47,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-03-47.log]
[testng] 08:03:47,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cdb7ee2 - End of configuration.
[testng] [2024-05-17 08:03:47,657] [pool-1-thread-3] Initializing /data/pete/Raw-CRW.CRW:
[testng] 08:03:47,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:03:47,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:47,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-03-47.log]
[testng] 08:03:47,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14114e5 - End of configuration.
[testng] [2024-05-17 08:03:47,891] [pool-1-thread-2] Initializing /data/pete/DNG-CRW.CRW:
[testng] 08:03:47,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:03:47,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:03:47,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-03-47.log]
[testng] 08:03:47,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e013bd6 - End of configuration.
[testng] [2024-05-17 08:03:56,584] [pool-1-thread-9] Initializing /data/pete/DNG-CR2.CR2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 32 seconds
Finished: SUCCESS