Started by upstream project "BIOFORMATS-test-repo" build number 66
originally caused by:
Started by upstream project "Trigger" build number 74
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins5097225926607170127.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_9956_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 09:16:46,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 09:16:46,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 09:16:46,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 09:16:46,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 09:16:46,910 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 09:16:46,910 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 09:16:46,910 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 09:16:46,910 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 09:16:46,911 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 09:16:46,912 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 09:16:46,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 531 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-17 09:16:46,923] [main] java.version = 1.8.0_342
[testng] 09:16:46,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:16:46,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:16:47,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_09-16-46.log]
[testng] 09:16:47,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-17 09:16:47,042] [main] testng.directory = /data
[testng] [2024-05-17 09:16:47,043] [main] testng.configDirectory = /config
[testng] [2024-05-17 09:16:47,066] [main] testng.multiplier = 1.0
[testng] [2024-05-17 09:16:47,066] [main] testng.in-memory = false
[testng] [2024-05-17 09:16:47,066] [main] testng.allow-missing = false
[testng] [2024-05-17 09:16:47,066] [main] user.language = en
[testng] [2024-05-17 09:16:47,066] [main] user.country = ${user.country}
[testng] [2024-05-17 09:16:47,066] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-17 09:16:59,074] [main] ----------------------------------------
[testng] [2024-05-17 09:16:59,074] [main] Total files: 944
[testng] [2024-05-17 09:16:59,074] [main] Scan time: 12.008 s (12 ms/file)
[testng] [2024-05-17 09:16:59,074] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-17 09:17:28,456] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 09:17:28,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 09:17:28,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_09-17-28.log]
[testng] 09:17:28,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25295faf - End of configuration.
[testng] [2024-05-17 09:17:28,511] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 09:17:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 09:17:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_09-17-28.log]
[testng] 09:17:28,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13080500 - End of configuration.
[testng] [2024-05-17 09:17:28,571] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 09:17:28,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 09:17:28,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_09-17-28.log]
[testng] 09:17:28,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@253bb622 - End of configuration.
[testng] [2024-05-17 09:17:28,601] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif:
[testng] 09:17:28,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 09:17:28,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_09-17-28.log]
[testng] 09:17:28,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23c83e05 - End of configuration.
[testng] [2024-05-17 09:17:28,682] [pool-1-thread-9] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 09:17:28,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 09:17:28,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_09-17-28.log]
[testng] 09:17:28,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24abb174 - End of configuration.
[testng] [2024-05-17 09:17:28,717] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 09:17:28,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 09:17:28,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_09-17-28.log]
[testng] 09:17:28,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a059d0a - End of configuration.
[testng] [2024-05-17 09:17:28,749] [pool-1-thread-7] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 09:17:28,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 09:17:28,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_09-17-28.log]
[testng] 09:17:28,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e0fae3c - End of configuration.
[testng] [2024-05-17 09:17:28,785] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 09:17:28,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 09:17:28,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_09-17-28.log]
[testng] 09:17:28,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d66c123 - End of configuration.
[testng] [2024-05-17 09:17:28,834] [pool-1-thread-5] Initializing /data/brian/Series002_z01.tif:
[testng] 09:17:28,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 09:17:28,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_09-17-28.log]
[testng] 09:17:28,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71a705d7 - End of configuration.
[testng] [2024-05-17 09:17:28,864] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 09:17:28,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 09:17:28,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_09-17-28.log]
[testng] 09:17:28,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29440443 - End of configuration.
[testng] [2024-05-17 09:17:28,890] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 09:17:28,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 09:17:28,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_09-17-28.log]
[testng] 09:17:28,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f893340 - End of configuration.
[testng] [2024-05-17 09:17:28,923] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 09:17:28,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 09:17:28,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:28,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_09-17-28.log]
[testng] 09:17:28,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397f50a0 - End of configuration.
[testng] [2024-05-17 09:17:30,737] [pool-1-thread-5] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] [2024-05-17 09:17:30,759] [pool-1-thread-9] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] [2024-05-17 09:17:35,660] [pool-1-thread-12] Initializing /data/brian/Series002_z00_ch00.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 55 seconds
Finished: SUCCESS