Started by user ha:////4LEYWOqAeqkfqKRc4ecK8VWHxdYruQ6qNhGsQM5K1C/5AAAAmh+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAyOEgY+/dLi1CL9lNSy4oLE5FQAhvKsvMMAAAA=devspace ha:////4HTUihXv1UkLksjmtWhSbl94iFdkXhh2blwpw3KAxOc4AAAAoh+LCAAAAAAAAP9tjTEOwjAQBM8BClpKHuFItIiK1krDC0x8GCfWnbEdkooX8TX+gCESFVvtrLSa5wtWKcKBo5UdUu8otU4GP9jS5Mixv3geZcdn2TIl9igbHBs2eJyx4YwwR1SwULBGaj0nRzbDRnX6rmuvydanHMu2V1A5c4MHCFXMWcf8hSnC9jqYxPTz/BXAFEIGsfuclm8zQVqFvQAAAA==[Pipeline] Start of Pipeline ha:////4LUm56pLCKEdN1M3W1Vx6wdbEcMAs3S6A4uqdHAZeBckAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycohUghExsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jduZBmjwAAAAA==[Pipeline] node Running on ha:////4MSFFwZhvKyaZKGejjoKFo+3SCj+z+JFRMNqFO6ZjC+wAAAAph+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz+EgYp/eT83ILSktQi/ZLU4pLMvJLU9KLEksz8PH0Arhz8Fc8AAAA=testintegration in /home/omero/workspace/IDRSITE-push ha:////4PAfvbiSx1BM+6wzQ8G6PNMQvDtfCMV+N8HsmsrcdsUXAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gA0xsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jfoP95RwAAAAA==[Pipeline] { ha:////4Dzb5qtJUlnzIzW7t2RQn68FfuhNL/hX29L02FpQsfJOAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbaGWsbAmNJ0AWEZb8zwLrbuWJvJp3kLiJlZNMMm+a93rDOic4UbLcG+wdZu14DKOti0+U+lugiXu6ck2YKRguzSSpM+cFJRUDS1gDKwEbgzpQdmgLbIVXD9UGhba9lFS/o4DGdQM8gYlqLiqVL8wJdvexy4Q/z18BzLEA29ce4gdpL1fxvAAAAA==[Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/IDRSITE-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 ha:////4BaW9sNJIwyT2yKg0U7mPVBB5a+kHAn8v9gRtMNIwZaGAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbGBtjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI4F2L72ED+qfHravAAAAA==[Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/IDRSITE-push/.git # timeout=10 > git config remote.origin.url https://github.com/idr/idr.openmicroscopy.org # timeout=10 Fetching upstream changes from https://github.com/idr/idr.openmicroscopy.org > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/idr/idr.openmicroscopy.org +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 94915ef467774ab056f6df88b2b5d944a6a61c4b (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 94915ef467774ab056f6df88b2b5d944a6a61c4b # timeout=10 Commit message: "Merge pull request #229 from pwalczysko/remove-mybinder" > git rev-list --no-walk 94915ef467774ab056f6df88b2b5d944a6a61c4b # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 ha:////4HtGHKCBI3lXNxIxXxu9PNo3kmnkDSbGo8Iq83TF5aq+AAAAox+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbmFgYK1tC4wmQRYQl/7PAult5Iq/mHSRuYuUkk8yb5r3esM4JTpQs9wZ7h1k7HsNo6+ITpf4WaOKerlwTZgqGSzNJ6sx5QUnFwBLWwErAxqAOlB3aAlvh1UO1QaFtLyXV7yigcd0AT2CimotK5Qtzgt197DLhz/NXAHMswPa1h/gB601hw7wAAAA=[Pipeline] pwd ha:////4N4syVtrk/i8A48xce2CWghNNMx5z8MnPR/zdyCR3m2PAAAAox+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbWJgYK1tC4wmQRYQl/7PAult5Iq/mHSRuYuUkk8yb5r3esM4JTpQs9wZ7h1k7HsNo6+ITpf4WaOKerlwTZgqGSzNJ6sx5QUnFwBLWwErAxqAOlB3aAlvh1UO1QaFtLyXV7yigcd0AT2CimotK5Qtzgt197DLhz/NXAHMswPa1h/gBJFH5RLwAAAA=[Pipeline] sh + mkdir -p build + echo build ha:////4PwOkyg/VPPc/0KCMJsynfCEttAHwNHGn5xgB/qz9e5KAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTb2BhjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI4F2L72ED9lYOJdvAAAAA==[Pipeline] sh + pushd build ~/workspace/IDRSITE-push/build ~/workspace/IDRSITE-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + popd ~/workspace/IDRSITE-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.2.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.0 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 ha:////4FTuqBt9TkbQKM2Voi7cdmAQcXNecZSQqXy1NuSXKbQOAAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMIBiQ5R0VppeIFJjHFi3QX7QlLxIr7GH4iIRMVWO9PM641lijhydKqx1HpKlVdd6N301MCxvQYeVMMXVTElDlaVdii5tqcZSxaLeVmOhcbKUhU4eXKCtW7MwxTBkCvOEid30Mh9fccTmZ7KYqJ8YYzY3Po6Mf06fwMYO0G2F+S7bfcBVVhdU70AAAA=[Pipeline] sh + export BASE_REPO=idr.openmicroscopy.org + BASE_REPO=idr.openmicroscopy.org + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-10-02 09:19:31,560 [ scc.config] DEBUG Found github.token 2026-10-02 09:19:31,561 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-10-02 09:19:31,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-02 09:19:32,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-02 09:19:32,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-10-02 09:19:32,797 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 10:10 2026-10-02 09:19:32,798 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-02 09:19:32,809 [ scc.git] DEBUG Check current status 2026-10-02 09:19:32,810 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-02 09:19:32,833 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder 2026-10-02 09:19:32,834 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-02 09:19:32,991 [ scc.config] DEBUG Found remote.origin.url 2026-10-02 09:19:33,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None 2026-10-02 09:19:34,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None 2026-10-02 09:19:34,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None 2026-10-02 09:19:34,475 [ scc.git] DEBUG Resetting... 2026-10-02 09:19:34,475 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-10-02 09:19:34,640 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder 2026-10-02 09:19:34,641 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-10-02 09:19:34,765 [ scc.git] DEBUG Check current status 2026-10-02 09:19:34,765 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-02 09:19:34,783 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder 2026-10-02 09:19:34,785 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-02 09:19:34,902 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-10-02 09:19:34,902 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-10-02 09:19:34,902 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-10-02 09:19:34,902 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-10-02 09:19:34,902 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-10-02 09:19:34,902 [ scc.repo] DEBUG ## PRs found: 2026-10-02 09:19:35,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None 2026-10-02 09:19:35,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None 2026-10-02 09:19:36,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None 2026-10-02 09:19:36,433 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' 2026-10-02 09:19:36,433 [ scc.repo] DEBUG ## Branches found: 2026-10-02 09:19:36,433 [ scc.git] DEBUG Get sha1 of %s 2026-10-02 09:19:36,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:36,450 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-02 09:19:36,482 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-02 09:19:36,482 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-02 09:19:36,508 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-02 09:19:36,591 [ scc.git] DEBUG Already up to date. 2026-10-02 09:19:36,591 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head' 2026-10-02 09:19:37,896 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org 2026-10-02 09:19:37,896 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD 2026-10-02 09:19:37,938 [ scc.git] DEBUG ## Unique users: [] 2026-10-02 09:19:37,938 [ scc.git] DEBUG Get sha1 of %s 2026-10-02 09:19:37,938 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:37,956 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8' 2026-10-02 09:19:38,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:38,028 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8' 2026-10-02 09:19:38,340 [ scc.git] DEBUG Auto-merging _data/download_urls.tsv 2026-10-02 09:19:38,340 [ scc.git] DEBUG CONFLICT (content): Merge conflict in _data/download_urls.tsv 2026-10-02 09:19:38,374 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-02 09:19:38,375 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-02 09:19:38,433 [ scc.git] DEBUG Calling 'git reset --hard 94915ef467774ab056f6df88b2b5d944a6a61c4b' 2026-10-02 09:19:38,619 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder 2026-10-02 09:19:38,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-02 09:19:38,822 [ scc.git] DEBUG Calling 'git merge-base 94915ef467774ab056f6df88b2b5d944a6a61c4b f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8' 2026-10-02 09:19:38,887 [ scc.git] DEBUG Calling 'git diff --name-only 66e98c953258a512ae5d4c288d8b1cc88a9c6fb9..94915ef467774ab056f6df88b2b5d944a6a61c4b' 2026-10-02 09:19:38,916 [ scc.git] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' Conflicting PR. Removed from build [IDRSITE-push#3](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/consoleText) for more details. Possible conflicts: - Upstream changes - _data/download_urls.tsv --conflicts 2026-10-02 09:19:38,930 [ scc.config] DEBUG Found github.token 2026-10-02 09:19:38,930 [ scc.git] DEBUG Adding comment to issue #225. 2026-10-02 09:19:39,987 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 201 2038 2026-10-02 09:19:39,988 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-02 09:19:40,108 [ scc.git] DEBUG Get sha1 of %s 2026-10-02 09:19:40,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:40,119 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-02 09:19:40,190 [ scc.git] DEBUG has no local changes 2026-10-02 09:19:40,190 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: idr/idr.openmicroscopy.org Already up to date. Conflicting PRs (not included): - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' Generated by IDRSITE-push#3 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/)' 2026-10-02 09:19:40,345 [ scc.git] DEBUG [detached HEAD c5e58af] merge master -Dorg -Snone 2026-10-02 09:19:40,347 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org 2026-10-02 09:19:40,347 [ scc.merge] INFO Already up to date. 2026-10-02 09:19:40,347 [ scc.merge] INFO 2026-10-02 09:19:40,347 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-02 09:19:40,347 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' 2026-10-02 09:19:40,347 [ scc.merge] INFO 2026-10-02 09:19:40,347 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-10-02 09:19:40,347 [ scc.git] DEBUG Calling 'git remote' Merge all submodules2026-10-02 09:19:41,756 [ scc.config] DEBUG Found github.token 2026-10-02 09:19:41,758 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-10-02 09:19:42,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-02 09:19:42,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-02 09:19:43,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-10-02 09:19:43,096 [ scc.gh] DEBUG 4997 remaining from 5000 (Reset at 10:10 2026-10-02 09:19:43,096 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-02 09:19:43,107 [ scc.git] DEBUG Check current status 2026-10-02 09:19:43,107 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-02 09:19:43,126 [ scc.git] DEBUG c5e58af merge master -Dorg -Snone 2026-10-02 09:19:43,127 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-02 09:19:43,240 [ scc.config] DEBUG Found remote.origin.url 2026-10-02 09:19:43,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None 2026-10-02 09:19:44,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None 2026-10-02 09:19:44,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None 2026-10-02 09:19:44,797 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-02 09:19:44,900 [ scc.git] DEBUG Resetting... 2026-10-02 09:19:44,900 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-10-02 09:19:45,015 [ scc.git] DEBUG HEAD is now at c5e58af merge master -Dorg -Snone 2026-10-02 09:19:45,016 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-10-02 09:19:45,165 [ scc.git] DEBUG Check current status 2026-10-02 09:19:45,165 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-02 09:19:45,190 [ scc.git] DEBUG c5e58af merge master -Dorg -Snone 2026-10-02 09:19:45,192 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-02 09:19:45,322 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-10-02 09:19:45,322 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-10-02 09:19:45,322 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-10-02 09:19:45,322 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-10-02 09:19:45,322 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-10-02 09:19:45,322 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-10-02 09:19:45,322 [ scc.repo] DEBUG ## PRs found: 2026-10-02 09:19:45,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None 2026-10-02 09:19:46,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None 2026-10-02 09:19:46,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None 2026-10-02 09:19:47,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8?page=1 HTTP/1.1" 200 None 2026-10-02 09:19:48,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-02 09:19:48,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-02 09:19:49,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8?page=1 HTTP/1.1" 200 None 2026-10-02 09:19:49,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8?per_page=1 HTTP/1.1" 200 2 2026-10-02 09:19:49,549 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' 2026-10-02 09:19:49,549 [ scc.repo] DEBUG ## Branches found: 2026-10-02 09:19:49,549 [ scc.git] DEBUG Get sha1 of %s 2026-10-02 09:19:49,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:49,561 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-02 09:19:49,579 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-02 09:19:49,579 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-02 09:19:49,598 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-02 09:19:49,648 [ scc.git] DEBUG Already up to date. 2026-10-02 09:19:49,648 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head' 2026-10-02 09:19:50,512 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org 2026-10-02 09:19:50,512 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD 2026-10-02 09:19:50,547 [ scc.git] DEBUG ## Unique users: [] 2026-10-02 09:19:50,547 [ scc.git] DEBUG Get sha1 of %s 2026-10-02 09:19:50,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:50,560 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8' 2026-10-02 09:19:50,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:50,619 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8' 2026-10-02 09:19:50,755 [ scc.git] DEBUG Auto-merging _data/download_urls.tsv 2026-10-02 09:19:50,755 [ scc.git] DEBUG CONFLICT (content): Merge conflict in _data/download_urls.tsv 2026-10-02 09:19:50,777 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-02 09:19:50,779 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-02 09:19:50,805 [ scc.git] DEBUG Calling 'git reset --hard c5e58af6c5eadb3c04fb3e25fe91c460f274b19d' 2026-10-02 09:19:50,936 [ scc.git] DEBUG HEAD is now at c5e58af merge master -Dorg -Snone 2026-10-02 09:19:51,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-02 09:19:51,136 [ scc.git] DEBUG Calling 'git merge-base c5e58af6c5eadb3c04fb3e25fe91c460f274b19d f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8' 2026-10-02 09:19:51,168 [ scc.git] DEBUG Calling 'git diff --name-only 66e98c953258a512ae5d4c288d8b1cc88a9c6fb9..c5e58af6c5eadb3c04fb3e25fe91c460f274b19d' 2026-10-02 09:19:51,188 [ scc.git] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' Conflicting PR. Removed from build [IDRSITE-push#3](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/consoleText) for more details. Possible conflicts: - Upstream changes - _data/download_urls.tsv --conflicts 2026-10-02 09:19:51,209 [ scc.config] DEBUG Found github.token 2026-10-02 09:19:51,209 [ scc.git] DEBUG Not adding comment to issue #225, already --conflicts. 2026-10-02 09:19:51,209 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-02 09:19:51,339 [ scc.git] DEBUG Get sha1 of %s 2026-10-02 09:19:51,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-02 09:19:51,354 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-02 09:19:51,493 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-02 09:19:51,579 [ scc.git] DEBUG has no local changes 2026-10-02 09:19:51,579 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: idr/idr.openmicroscopy.org Already up to date. Conflicting PRs (not included): - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' Generated by IDRSITE-push#3 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/)' 2026-10-02 09:19:51,775 [ scc.git] DEBUG [detached HEAD b9a4405] merge master -Dorg -Ssuccess-only 2026-10-02 09:19:51,777 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org 2026-10-02 09:19:51,777 [ scc.merge] INFO Already up to date. 2026-10-02 09:19:51,777 [ scc.merge] INFO 2026-10-02 09:19:51,777 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-02 09:19:51,777 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github' 2026-10-02 09:19:51,777 [ scc.merge] INFO 2026-10-02 09:19:51,777 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-10-02 09:19:51,777 [ scc.git] DEBUG Calling 'git remote' Update component versions grep: build.gradle: No such file or directory grep: settings.gradle: No such file or directory grep: build.gradle: No such file or directory grep: build.gradle: No such file or directory Up-to-date: Commit all component version changes HEAD detached from 94915ef nothing to commit, working tree clean 2026-10-02 09:19:59,231 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci ha:////4GiSHvYe3hvqvgqSw1oeHxB3veJZDDZ/+1eDGqHHschcAAAAox+LCAAAAAAAAP9tjbEOgjAURS8YB1dHP6KExM04uTYsfkGFWgvNe9g+hMkv8tf8B4kkTt7pnrOc1xvrFHHk6FRrqfOUaq/6MLj5qZFjdw08qpYvqmZKHKyq7FhxY08LViwWy7IcK42NpTpw8uQEW92ahymCIVecJc7uoJH75o4nMj2XxUT5whSxuw1NYvp1/gYw9YJsL8jLsv8AFGlGSr0AAAA=[Pipeline] archiveArtifacts Archiving artifacts ha:////4Kd+8iJZvvgY1eqdr4fd9POs3bJ1w1asYxPjGHgoHjdFAAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMIRiA5R0VppeIFJjHFi3QX7QlLxIr7GH4iIRMVWO9PM641lijhydKqx1HpKlVdd6N301MCxvQYeVMMXVTElDlaVdii5tqcZSxaLeVmOhcbKUhU4eXKCtW7MwxTBkCvOEid30Mh9fccTmZ7KYqJ8YYzY3Po6Mf06fwMYu06Qb3eCbP8B5XiFqL0AAAA=[Pipeline] } ha:////4C3SmxTwedUZ9bLdRSd/iudmkPipGMcHwMGOPty9JsTWAAAAoh+LCAAAAAAAAP9tjbEOgjAURS8YB1dHP6LEMBon14bFL6hQa6F5D9uHMPlF/pr/IJHEyTvdc5bzemOdIo4cnWotdZ5S7VUfBjc/NXLsroFH1fJF1UyJg1WVHStu7GnBisViWZZjpbGxVAdOnpxgq1vzMEUw5IqzxNkdNHLf3PFEpueymChfmCJ2t6FJTL/O3wCmvhfk+1KQlR/2xIELvQAAAA==[Pipeline] // node ha:////4A7QbWRFPzi3sXMLRrmpiTxj+xYqQs7Y96FryaLlmKRtAAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMIRiA5R0VppeIFJjHFi3QX7QlLxIr7GH4iIRMVWO9PM641lijhydKqx1HpKlVdd6N301MCxvQYeVMMXVTElDlaVdii5tqcZSxaLeVmOhcbKUhU4eXKCtW7MwxTBkCvOEid30Mh9fccTmZ7KYqJ8YYzY3Po6Mf06fwMYu06Qb/eCbPcBcCimzr0AAAA=[Pipeline] End of Pipeline Finished: SUCCESS