11:28:46 Started by upstream project "Trigger" build number 122 11:28:46 originally caused by: 11:28:46 Started by user devspace 11:28:46 Running as SYSTEM 11:28:46 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 11:28:46 The recommended git tool is: NONE 11:28:46 No credentials specified 11:28:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 11:28:46 Fetching changes from the remote Git repository 11:28:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 11:28:46 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 11:28:46 > git --version # timeout=10 11:28:46 > git --version # 'git version 2.39.3' 11:28:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:28:51 > git rev-parse origin/merge_ci^{commit} # timeout=10 11:28:51 Checking out Revision e41a3b9be501292575c092712b22f5da925ebf31 (origin/merge_ci) 11:28:51 > git config core.sparsecheckout # timeout=10 11:28:51 > git checkout -f e41a3b9be501292575c092712b22f5da925ebf31 # timeout=10 11:28:52 Commit message: "Add version.properties to etc/omero.properties" 11:28:52 > git rev-list --no-walk 99dd296a2f9aaefb0165b1ea8ae99b3f0764a271 # timeout=10 11:28:52 Cleaning workspace 11:28:52 > git rev-parse --verify HEAD # timeout=10 11:28:52 Resetting working tree 11:28:52 > git reset --hard # timeout=10 11:28:52 > git clean -fdx # timeout=10 11:28:52 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 107 11:28:52 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1855544478549168977.sh 11:28:52 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 11:28:52 + cd src 11:28:52 + export OMERO_BRANCH=merge_ci 11:28:52 + OMERO_BRANCH=merge_ci 11:28:52 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 11:28:52 + source /home/omero/settings.env 11:28:52 ++ OMERO_DB_HOST=pg 11:28:52 ++ OMERO_DB_USER=postgres 11:28:52 ++ OMERO_DB_PASS= 11:28:52 ++ OMERO_ROOT_PASS=omero 11:28:52 ++ OMERO_DATA_DIR=/OMERO 11:28:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:28:52 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 11:28:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 11:28:57 Collecting zeroc-ice==3.6.5 11:28:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 11:29:00 WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available. 11:29:00 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 11:29:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 11:29:01 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.1.1) 11:29:01 Collecting setuptools 11:29:01 Using cached setuptools-70.2.0-py3-none-any.whl (930 kB) 11:29:01 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3) 11:29:02 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 11:29:02 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 11:29:02 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 11:29:02 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 11:29:02 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 11:29:02 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 11:29:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 11:29:02 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 11:29:02 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 11:29:02 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 11:29:02 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 11:29:02 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 11:29:02 Installing collected packages: setuptools 11:29:02 Attempting uninstall: setuptools 11:29:02 Found existing installation: setuptools 70.1.1 11:29:02 Uninstalling setuptools-70.1.1: 11:29:02 Successfully uninstalled setuptools-70.1.1 11:29:03 Successfully installed setuptools-70.2.0 11:29:03 WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available. 11:29:03 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 11:29:03 + source docs/hudson/OMERO.sh 11:29:03 ++ set -e 11:29:03 ++ set -u 11:29:03 ++ set -x 11:29:03 ++ source docs/hudson/functions.sh 11:29:03 ++ echo Building merge_ci 11:29:03 Building merge_ci 11:29:03 ++ python3 ./build.py build-dev release-all 11:29:03 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 11:29:03 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:29:03 11:29:03 check-ivy: 11:29:03 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 11:29:03 Created dir: /home/omero/workspace/OMERO-build/src/target 11:29:04 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 11:29:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:29:05 11:29:05 build-scons: 11:29:05 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:29:05 No sub-builds to iterate on 11:29:05 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:29:05 11:29:05 buildlist: 11:29:05 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 11:29:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:29:05 11:29:05 clean: 11:29:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:29:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:29:06 11:29:06 python-clean: 11:29:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:29:06 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-e41a3b9be5-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:29:06 warnings.warn( 11:29:06 running clean 11:29:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:29:06 11:29:06 python-clean: 11:29:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:29:06 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-e41a3b9be5-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:29:06 warnings.warn( 11:29:06 running clean 11:29:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:29:06 11:29:06 python-clean: 11:29:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:29:06 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-e41a3b9be5-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:29:06 warnings.warn( 11:29:06 running clean 11:29:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 11:29:06 Deleting directory /home/omero/workspace/OMERO-build/src/target 11:29:06 11:29:06 build-scons: 11:29:06 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:29:06 11:29:06 build: 11:29:06 No sub-builds to iterate on 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:29:06 11:29:06 tools-init: 11:29:06 no-op 11:29:07 11:29:07 retrieve: 11:29:07 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 11:29:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:29:57 11:29:57 prepare: 11:29:57 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:29:57 11:29:57 pre-compile: 11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:29:58 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:29:58 11:29:58 compile: 11:29:58 no-op 11:29:58 11:29:58 package: 11:29:58 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 11:29:58 11:29:58 install: 11:29:58 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-475-e41a3b9be5-ice36 :: integration :: Tue Jul 02 11:29:06 UTC 2024 11:29:58 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 11:29:58 :: publishing :: omero#omero_client 11:29:58 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-e41a3b9be5-ice36/omero_client-5.6.3-475-e41a3b9be5-ice36.jar 11:29:58 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-e41a3b9be5-ice36/omero_client-5.6.3-475-e41a3b9be5-ice36.xml 11:29:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:29:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:29:59 11:29:59 retrieve: 11:29:59 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 11:29:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:29:59 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:29:59 11:29:59 dist: 11:29:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 11:29:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:29:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:29:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 11:29:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 11:29:59 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 11:29:59 Entering /home/omero/workspace/OMERO-build/src/components/tests... 11:29:59 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:29:59 11:29:59 copy-licenses: 11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:29:59 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 11:29:59 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 11:29:59 11:29:59 copy-history: 11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:29:59 11:29:59 copy-etc: 11:29:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 11:29:59 11:29:59 copy-sql: 11:29:59 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 11:30:14 11:30:14 copy-server: 11:30:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 11:30:14 11:30:14 copy-client: 11:30:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 11:30:15 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 11:30:16 11:30:16 update-version: 11:30:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 11:30:16 11:30:16 create-workdirs: 11:30:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 11:30:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 11:30:16 11:30:16 copy-luts: 11:30:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:30:16 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:30:16 11:30:16 test-compile: 11:30:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:30:16 11:30:16 testng-init: 11:30:16 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 11:30:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:30:20 11:30:19,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 11:30:20 11:30:19,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - No custom configurators were discovered as a service. 11:30:20 11:30:19,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 11:30:20 11:30:19,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 11:30:20 11:30:19,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 11:30:20 11:30:19,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 11:30:20 11:30:19,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 11:30:20 11:30:19,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 11:30:20 11:30:19,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 11:30:20 11:30:19,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 11:30:20 11:30:19,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:30:20 11:30:19,977 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4046b407 - Resource [logback.xml] occurs multiple times on the classpath. 11:30:20 11:30:19,977 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4046b407 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:30:20 11:30:19,977 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4046b407 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 11:30:20 11:30:20,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 11:30:20 11:30:20,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 11:30:20 11:30:20,228 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 11:30:20 11:30:20,230 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39b266b2 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 11:30:20 11:30:20,230 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39b266b2 - Please move "immediateFlush" property into the enclosing appender. 11:30:20 11:30:20,297 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39b266b2 - Setting the "immediateFlush" property of the enclosing appender to true 11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 11:30:20 11:30:20,299 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 11:30:20 11:30:20,300 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5ea7ad41 - End of configuration. 11:30:20 11:30:20,302 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3dc70c5a - Registering current configuration as safe fallback point 11:30:20 11:30:20,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 327 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 11:30:20 11:30:20 lifecycle.test-compile: 11:30:20 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:30:20 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:30:20 warning: [options] bootstrap class path not set in conjunction with -source 8 11:30:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:22 import omero.grid.RawAccessRequest; 11:30:22 ^ 11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:23 import omero.grid.RawAccessRequest; 11:30:23 ^ 11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:23 import omero.grid.RawAccessRequest; 11:30:23 ^ 11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 11:30:23 import omero.model.ImportJob; 11:30:23 ^ 11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:30:23 import omero.model.ImportJobI; 11:30:23 ^ 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 11:30:24 IObject link = (IObject) linkClass.newInstance(); 11:30:24 ^ 11:30:24 where T is a type-variable: 11:30:24 T extends Object declared in class Class 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 11:30:24 T copy = (T) obj.getClass().newInstance(); 11:30:24 ^ 11:30:24 where T is a type-variable: 11:30:24 T extends Object declared in class Class 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:24 RawAccessRequest raw = new RawAccessRequest(); 11:30:24 ^ 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:24 RawAccessRequest raw = new RawAccessRequest(); 11:30:24 ^ 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:30:24 raw.repoUuid = legacy.root().getHash().getValue(); 11:30:24 ^ 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 11:30:24 raw.command = "rm"; 11:30:24 ^ 11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 11:30:24 raw.args = Arrays.asList(path); 11:30:24 ^ 11:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 11:30:25 final IObject link = linkClass.newInstance(); 11:30:25 ^ 11:30:25 where T is a type-variable: 11:30:25 T extends Object declared in class Class 11:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 11:30:25 originalLink.setChild(annotationClass.newInstance()); 11:30:25 ^ 11:30:25 where T is a type-variable: 11:30:25 T extends Object declared in class Class 11:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:30:25 RoiResult r = svc.findByImage(id, new RoiOptions()); 11:30:25 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:26 final RawAccessRequest request = new RawAccessRequest(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:26 final RawAccessRequest request = new RawAccessRequest(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:30:26 request.repoUuid = repo.root().getHash().getValue(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 11:30:26 request.command = "exists"; 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 11:30:26 request.args = Collections.singletonList(dirPath); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:26 final RawAccessRequest request = new RawAccessRequest(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:30:26 final RawAccessRequest request = new RawAccessRequest(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:30:26 request.repoUuid = repo.root().getHash().getValue(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 11:30:26 request.command = "exists"; 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 11:30:26 request.args = Collections.singletonList(dirName); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 11:30:26 final ImportJob importJob = new ImportJobI(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:30:26 final ImportJob importJob = new ImportJobI(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 11:30:26 importJob.setImageName(omero.rtypes.rstring(name)); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 11:30:26 importJob.setImageDescription(omero.rtypes.rstring(desc)); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:30:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:30:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:30:26 final String savedName = sent.getImageName().getValue().toString(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:30:26 final String savedDesc = sent.getImageDescription().getValue().toString(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:30:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:30:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:30:26 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 11:30:26 ^ 11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:30:26 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 11:30:26 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 RoiResult r = svc.findByImage(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 11:30:27 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 11:30:27 table = svc.getTable(f.getId().getValue()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 RoiResult r = svc.findByImage(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:30:27 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:30:27 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 11:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 11:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:30:27 svc.getShapeStatsRestricted( 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:30:27 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:30:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:30:27 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:30:27 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:30:27 request.typesToIgnore = Collections.singletonList("Annotation"); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:30:27 request.typesToIgnore = Collections.singletonList("Annotation"); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:30:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:30:27 p2.setRelatedTo(p1); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:30:27 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:30:27 pixels1.setRelatedTo(pixels2); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:30:27 Pixels pixels = pixels1.getRelatedTo(); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:30:27 Assert.assertNull(pixels1.getRelatedTo()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:30:27 pixels1.setRelatedTo(pixels2); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:30:27 Pixels pixels = pixels1.getRelatedTo(); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:30:27 Assert.assertNull(pixels1.getRelatedTo()); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:30:27 ^ 11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:30:27 ^ 11:30:27 Note: Some input files use unchecked or unsafe operations. 11:30:27 Note: Recompile with -Xlint:unchecked for details. 11:30:27 88 warnings 11:30:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_658857995.tmp 11:30:27 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 11:30:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:30:27 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-475-e41a3b9be5-ice36 :: integration :: Tue Jul 02 11:30:16 UTC 2024 11:30:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 11:30:27 :: publishing :: omero#OmeroJava-test 11:30:27 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-e41a3b9be5-ice36.jar 11:30:27 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-e41a3b9be5-ice36.xml 11:30:27 11:30:27 build-eclipse: 11:30:27 No sub-builds to iterate on 11:30:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:30:28 11:30:28 retrieve: 11:30:28 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 11:30:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:30:30 11:30:30 prepare: 11:30:30 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:30:32 11:30:32 release-clients: 11:30:32 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-475-e41a3b9be5-ice36.zip 11:30:39 11:30:39 release-zip: 11:30:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip 11:30:52 11:30:52 BUILD SUCCESSFUL 11:30:52 Total time: 1 minute 48 seconds 11:30:52 ++ '[' -d .git ']' 11:30:52 ++ python3 ./build.py release-src 11:30:52 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 11:30:52 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:30:53 11:30:53 release-src-git: 11:30:53 Releasing openmicroscopy-5.6.3-475-e41a3b9be5-ice36 11:30:54 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-e41a3b9be5-ice36.zip 11:30:54 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-e41a3b9be5-ice36-base.zip 11:30:56 11:30:56 BUILD SUCCESSFUL 11:30:56 Total time: 4 seconds 11:30:56 ++ echo BUILD_NUMBER=108 11:30:56 ++ echo OMERO_BRANCH=merge_ci 11:30:56 ++ git_info 11:30:56 +++ git rev-parse HEAD 11:30:56 ++ HEAD=e41a3b9be501292575c092712b22f5da925ebf31 11:30:56 ++ git log --max-count=1 e41a3b9be501292575c092712b22f5da925ebf31 11:30:56 ++ env 11:30:56 ++ sort 11:30:56 Archiving artifacts 11:31:28 Finished: SUCCESS