15:07:35 Started by upstream project "Trigger" build number 30 15:07:35 originally caused by: 15:07:35 Started by user devspace 15:07:35 Running as SYSTEM 15:07:35 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 15:07:35 The recommended git tool is: NONE 15:07:35 No credentials specified 15:07:35 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 15:07:35 Fetching changes from the remote Git repository 15:07:35 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 15:07:35 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 15:07:35 > git --version # timeout=10 15:07:35 > git --version # 'git version 2.47.3' 15:07:35 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 15:07:35 > git rev-parse origin/merge_ci^{commit} # timeout=10 15:07:35 Checking out Revision b8f107afdf4da0ee6f9f01b199024c3d20f6af28 (origin/merge_ci) 15:07:35 > git config core.sparsecheckout # timeout=10 15:07:35 > git checkout -f b8f107afdf4da0ee6f9f01b199024c3d20f6af28 # timeout=10 15:07:35 Commit message: "Add version.properties to etc/omero.properties" 15:07:35 > git rev-list --no-walk 43bbcc5d9d3c7ce0364f55e29a4eaeeb2600b588 # timeout=10 15:07:35 Cleaning workspace 15:07:35 > git rev-parse --verify HEAD # timeout=10 15:07:35 Resetting working tree 15:07:35 > git reset --hard # timeout=10 15:07:36 > git clean -fdx # timeout=10 15:07:36 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 11 15:07:36 [OMERO-build] $ /bin/bash -xe /tmp/jenkins6652581004161963240.sh 15:07:36 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 15:07:36 + cd src 15:07:36 + export OMERO_BRANCH=merge_ci 15:07:36 + OMERO_BRANCH=merge_ci 15:07:36 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 15:07:36 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 15:07:36 + source /home/omero/settings.env 15:07:36 ++ OMERO_DB_HOST=pg 15:07:36 ++ OMERO_DB_USER=postgres 15:07:36 ++ OMERO_DB_PASS= 15:07:36 ++ OMERO_ROOT_PASS=omero 15:07:36 ++ OMERO_DATA_DIR=/OMERO 15:07:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 15:07:36 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 15:07:40 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 15:07:40 Collecting zeroc-ice==3.6.5 15:07:40 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 15:07:42 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.5 MB/s eta 0:00:00 15:07:43 Installing collected packages: zeroc-ice 15:07:43 Successfully installed zeroc-ice-3.6.5 15:07:43 15:07:43 [notice] A new release of pip available: 22.3.1 -> 25.3 15:07:43 [notice] To update, run: python3.11 -m pip install --upgrade pip 15:07:43 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 15:07:44 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 15:07:44 Collecting setuptools<66 15:07:44 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 15:07:44 Collecting omero-py 15:07:44 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 15:07:44 Collecting appdirs 15:07:44 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 15:07:44 Collecting future 15:07:44 Using cached future-1.0.0-py3-none-any.whl (491 kB) 15:07:45 Collecting numpy<3 15:07:45 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB) 15:07:45 Collecting Pillow>=10.0.0 15:07:45 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 15:07:46 Collecting PyYAML 15:07:46 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 15:07:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 15:07:46 Collecting requests 15:07:46 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 15:07:46 Collecting portalocker 15:07:46 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 15:07:46 Collecting charset_normalizer<4,>=2 15:07:46 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 15:07:46 Collecting idna<4,>=2.5 15:07:46 Using cached idna-3.11-py3-none-any.whl (71 kB) 15:07:46 Collecting urllib3<3,>=1.21.1 15:07:46 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB) 15:07:46 Collecting certifi>=2017.4.17 15:07:46 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 15:07:46 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 15:07:46 Attempting uninstall: setuptools 15:07:46 Found existing installation: setuptools 65.5.1 15:07:46 Uninstalling setuptools-65.5.1: 15:07:46 Successfully uninstalled setuptools-65.5.1 15:07:52 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.0 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.2 15:07:52 15:07:52 [notice] A new release of pip available: 22.3.1 -> 25.3 15:07:52 [notice] To update, run: python3.11 -m pip install --upgrade pip 15:07:52 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 15:07:52 ++ deactivate nondestructive 15:07:52 ++ '[' -n '' ']' 15:07:52 ++ '[' -n '' ']' 15:07:52 ++ hash -r 15:07:52 ++ '[' -n '' ']' 15:07:52 ++ unset VIRTUAL_ENV 15:07:52 ++ unset VIRTUAL_ENV_PROMPT 15:07:52 ++ '[' '!' nondestructive = nondestructive ']' 15:07:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 15:07:52 ++ export VIRTUAL_ENV 15:07:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 15:07:52 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 15:07:52 ++ export PATH 15:07:52 ++ '[' -n '' ']' 15:07:52 ++ '[' -z '' ']' 15:07:52 ++ _OLD_VIRTUAL_PS1= 15:07:52 ++ PS1='(omero-virtualenv) ' 15:07:52 ++ export PS1 15:07:52 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 15:07:52 ++ export VIRTUAL_ENV_PROMPT 15:07:52 ++ hash -r 15:07:52 + source docs/hudson/OMERO.sh 15:07:52 ++ set -e 15:07:52 ++ set -u 15:07:52 ++ set -x 15:07:52 ++ source docs/hudson/functions.sh 15:07:52 ++ echo Building merge_ci 15:07:52 Building merge_ci 15:07:52 ++ python3 ./build.py build-dev release-all 15:07:52 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 15:07:53 15:07:53 check-ivy: 15:07:53 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 15:07:53 Created dir: /home/omero/workspace/OMERO-build/src/target 15:07:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:07:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:07:53 15:07:53 build-scons: 15:07:53 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 15:07:53 No sub-builds to iterate on 15:07:53 Entering /home/omero/workspace/OMERO-build/src/components/tools... 15:07:54 15:07:54 buildlist: 15:07:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:07:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:07:54 15:07:54 clean: 15:07:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:07:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:07:54 15:07:54 python-clean: 15:07:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 15:07:54 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-b8f107afdf-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 15:07:54 warnings.warn( 15:07:54 running clean 15:07:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 15:07:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 15:07:54 15:07:54 python-clean: 15:07:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 15:07:54 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-b8f107afdf-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 15:07:54 warnings.warn( 15:07:54 running clean 15:07:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 15:07:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 15:07:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:07:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:07:55 15:07:55 python-clean: 15:07:55 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 15:07:55 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-b8f107afdf-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 15:07:55 warnings.warn( 15:07:55 running clean 15:07:55 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 15:07:55 Deleting directory /home/omero/workspace/OMERO-build/src/target 15:07:55 15:07:55 build-scons: 15:07:55 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 15:07:55 15:07:55 build: 15:07:55 No sub-builds to iterate on 15:07:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:07:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:07:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 15:07:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 15:07:55 15:07:55 tools-init: 15:07:55 no-op 15:07:55 15:07:55 retrieve: 15:07:55 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:07:55 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:08:35 15:08:35 prepare: 15:08:35 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 15:08:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 15:08:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 15:08:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:08:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:08:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 15:08:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:08:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:08:35 15:08:35 pre-compile: 15:08:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:08:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:08:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:08:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:08:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:08:36 15:08:36 compile: 15:08:36 no-op 15:08:36 15:08:36 package: 15:08:36 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 15:08:36 15:08:36 install: 15:08:36 :: delivering :: omero#omero_client;working@3cd06cac5102 :: 5.6.3-578-b8f107afdf-ice36-b11 :: integration :: Wed Jan 07 15:07:55 UTC 2026 15:08:36 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 15:08:36 :: publishing :: omero#omero_client 15:08:36 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-b8f107afdf-ice36-b11/omero_client-5.6.3-578-b8f107afdf-ice36-b11.jar 15:08:36 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-b8f107afdf-ice36-b11/omero_client-5.6.3-578-b8f107afdf-ice36-b11.xml 15:08:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:08:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:08:37 15:08:37 retrieve: 15:08:37 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:08:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:08:37 Entering /home/omero/workspace/OMERO-build/src/components/tools... 15:08:37 15:08:37 dist: 15:08:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 15:08:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 15:08:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 15:08:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 15:08:37 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 15:08:37 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 15:08:37 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 15:08:37 Entering /home/omero/workspace/OMERO-build/src/components/tests... 15:08:37 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 15:08:37 15:08:37 copy-licenses: 15:08:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 15:08:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 15:08:37 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 15:08:37 15:08:37 copy-history: 15:08:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 15:08:37 15:08:37 copy-etc: 15:08:37 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 15:08:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 15:08:37 15:08:37 copy-sql: 15:08:37 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 15:08:43 15:08:43 copy-server: 15:08:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 15:08:43 15:08:43 copy-client: 15:08:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 15:08:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 15:08:44 15:08:44 update-version: 15:08:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 15:08:44 15:08:44 create-workdirs: 15:08:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 15:08:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 15:08:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 15:08:44 15:08:44 copy-luts: 15:08:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 15:08:44 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 15:08:44 15:08:44 test-compile: 15:08:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 15:08:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 15:08:44 15:08:44 testng-init: 15:08:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:08:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:08:47 15:08:47,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 15:08:47 15:08:47,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - No custom configurators were discovered as a service. 15:08:47 15:08:47,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 15:08:47 15:08:47,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 15:08:47 15:08:47,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 15:08:47 15:08:47,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 15:08:47 15:08:47,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 15:08:47 15:08:47,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 15:08:47 15:08:47,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 15:08:47 15:08:47,212 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 15:08:47 15:08:47,212 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 15:08:47 15:08:47,213 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@278d2891 - Resource [logback.xml] occurs multiple times on the classpath. 15:08:47 15:08:47,213 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@278d2891 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 15:08:47 15:08:47,213 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@278d2891 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 15:08:47 15:08:47,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 15:08:47 15:08:47,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 15:08:47 15:08:47,423 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 15:08:47 15:08:47,425 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f065ddc - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 15:08:47 15:08:47,425 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f065ddc - Please move "immediateFlush" property into the enclosing appender. 15:08:47 15:08:47,481 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f065ddc - Setting the "immediateFlush" property of the enclosing appender to true 15:08:47 15:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 15:08:47 15:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 15:08:47 15:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 15:08:47 15:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 15:08:47 15:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 15:08:47 15:08:47,482 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 15:08:47 15:08:47,483 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2c94299a - End of configuration. 15:08:47 15:08:47,484 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@39fc5c09 - Registering current configuration as safe fallback point 15:08:47 15:08:47,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 15:08:47 15:08:47 lifecycle.test-compile: 15:08:47 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 15:08:47 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 15:08:47 warning: [options] bootstrap class path not set in conjunction with -source 8 15:08:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:48 import omero.grid.RawAccessRequest; 15:08:48 ^ 15:08:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:49 import omero.grid.RawAccessRequest; 15:08:49 ^ 15:08:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:49 import omero.grid.RawAccessRequest; 15:08:49 ^ 15:08:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 15:08:49 import omero.model.ImportJob; 15:08:49 ^ 15:08:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 15:08:49 import omero.model.ImportJobI; 15:08:49 ^ 15:08:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 15:08:49 IObject link = (IObject) linkClass.newInstance(); 15:08:49 ^ 15:08:49 where T is a type-variable: 15:08:49 T extends Object declared in class Class 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 15:08:50 T copy = (T) obj.getClass().newInstance(); 15:08:50 ^ 15:08:50 where T is a type-variable: 15:08:50 T extends Object declared in class Class 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:50 RawAccessRequest raw = new RawAccessRequest(); 15:08:50 ^ 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:50 RawAccessRequest raw = new RawAccessRequest(); 15:08:50 ^ 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 15:08:50 raw.repoUuid = legacy.root().getHash().getValue(); 15:08:50 ^ 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 15:08:50 raw.command = "rm"; 15:08:50 ^ 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 15:08:50 raw.args = Arrays.asList(path); 15:08:50 ^ 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 15:08:50 final IObject link = linkClass.newInstance(); 15:08:50 ^ 15:08:50 where T is a type-variable: 15:08:50 T extends Object declared in class Class 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 15:08:50 originalLink.setChild(annotationClass.newInstance()); 15:08:50 ^ 15:08:50 where T is a type-variable: 15:08:50 T extends Object declared in class Class 15:08:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 15:08:50 RoiResult r = svc.findByImage(id, new RoiOptions()); 15:08:50 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:51 final RawAccessRequest request = new RawAccessRequest(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:51 final RawAccessRequest request = new RawAccessRequest(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 15:08:51 request.repoUuid = repo.root().getHash().getValue(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 15:08:51 request.command = "exists"; 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 15:08:51 request.args = Collections.singletonList(dirPath); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:51 final RawAccessRequest request = new RawAccessRequest(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:08:51 final RawAccessRequest request = new RawAccessRequest(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 15:08:51 request.repoUuid = repo.root().getHash().getValue(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 15:08:51 request.command = "exists"; 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 15:08:51 request.args = Collections.singletonList(dirName); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 15:08:51 final ImportJob importJob = new ImportJobI(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 15:08:51 final ImportJob importJob = new ImportJobI(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 15:08:51 importJob.setImageName(omero.rtypes.rstring(name)); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 15:08:51 importJob.setImageDescription(omero.rtypes.rstring(desc)); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 15:08:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 15:08:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 15:08:51 final String savedName = sent.getImageName().getValue().toString(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 15:08:51 final String savedDesc = sent.getImageDescription().getValue().toString(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 15:08:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 15:08:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 15:08:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 15:08:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 RoiResult r = svc.findByImage(image.getId().getValue(), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 15:08:51 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 15:08:51 table = svc.getTable(f.getId().getValue()); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 RoiResult r = svc.findByImage(image.getId().getValue(), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 15:08:51 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 15:08:51 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 15:08:51 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 15:08:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 15:08:51 svc.getShapeStatsRestricted( 15:08:51 ^ 15:08:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 15:08:51 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 15:08:51 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:08:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:08:52 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:08:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:08:52 request.typesToIgnore = Collections.singletonList("Annotation"); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:08:52 request.typesToIgnore = Collections.singletonList("Annotation"); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:08:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:08:52 p2.setRelatedTo(p1); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:08:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:08:52 pixels1.setRelatedTo(pixels2); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:08:52 Pixels pixels = pixels1.getRelatedTo(); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:08:52 Assert.assertNull(pixels1.getRelatedTo()); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:08:52 pixels1.setRelatedTo(pixels2); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:08:52 Pixels pixels = pixels1.getRelatedTo(); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:08:52 Assert.assertNull(pixels1.getRelatedTo()); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:08:52 ^ 15:08:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:08:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:08:52 ^ 15:08:52 Note: Some input files use unchecked or unsafe operations. 15:08:52 Note: Recompile with -Xlint:unchecked for details. 15:08:52 88 warnings 15:08:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1478071356.tmp 15:08:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 15:08:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:08:52 :: delivering :: omero#OmeroJava-test;working@3cd06cac5102 :: 5.6.3-578-b8f107afdf-ice36-b11 :: integration :: Wed Jan 07 15:08:44 UTC 2026 15:08:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 15:08:52 :: publishing :: omero#OmeroJava-test 15:08:52 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-b8f107afdf-ice36-b11.jar 15:08:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-b8f107afdf-ice36-b11.xml 15:08:52 15:08:52 build-eclipse: 15:08:52 No sub-builds to iterate on 15:08:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 15:08:52 15:08:52 retrieve: 15:08:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:08:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:08:54 15:08:54 prepare: 15:08:54 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 15:08:55 15:08:55 release-clients: 15:08:55 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-578-b8f107afdf-ice36-b11.zip 15:09:00 15:09:00 release-zip: 15:09:00 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip 15:09:10 15:09:10 BUILD SUCCESSFUL 15:09:10 Total time: 1 minute 18 seconds 15:09:10 ++ '[' -d .git ']' 15:09:10 ++ python3 ./build.py release-src 15:09:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 15:09:11 15:09:11 release-src-git: 15:09:11 Releasing openmicroscopy-5.6.3-578-b8f107afdf-ice36-b11 15:09:12 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-b8f107afdf-ice36-b11.zip 15:09:12 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-b8f107afdf-ice36-b11-base.zip 15:09:14 15:09:14 BUILD SUCCESSFUL 15:09:14 Total time: 3 seconds 15:09:14 ++ echo BUILD_NUMBER=11 15:09:14 ++ echo OMERO_BRANCH=merge_ci 15:09:14 ++ git_info 15:09:14 +++ git rev-parse HEAD 15:09:14 ++ HEAD=b8f107afdf4da0ee6f9f01b199024c3d20f6af28 15:09:14 ++ git log --max-count=1 b8f107afdf4da0ee6f9f01b199024c3d20f6af28 15:09:14 ++ env 15:09:14 ++ sort 15:09:14 Archiving artifacts 15:09:30 Finished: SUCCESS