08:54:23 Started by upstream project "Trigger" build number 149 08:54:23 originally caused by: 08:54:23 Started by user devspace 08:54:23 Restarted from build #148, stage OMERO Python 08:54:23 Running as SYSTEM 08:54:23 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 08:54:23 The recommended git tool is: NONE 08:54:23 No credentials specified 08:54:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 08:54:23 Fetching changes from the remote Git repository 08:54:23 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 08:54:23 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 08:54:23 > git --version # timeout=10 08:54:23 > git --version # 'git version 2.39.3' 08:54:23 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:54:29 > git rev-parse origin/merge_ci^{commit} # timeout=10 08:54:29 Checking out Revision 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 (origin/merge_ci) 08:54:29 > git config core.sparsecheckout # timeout=10 08:54:29 > git checkout -f 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 # timeout=10 08:54:29 Commit message: "Add version.properties to etc/omero.properties" 08:54:29 > git rev-list --no-walk 2a6e4b543fe776fc04a98272eafac8eb87b7e61c # timeout=10 08:54:29 Cleaning workspace 08:54:29 > git rev-parse --verify HEAD # timeout=10 08:54:29 Resetting working tree 08:54:29 > git reset --hard # timeout=10 08:54:29 > git clean -fdx # timeout=10 08:54:29 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 126 08:54:29 [OMERO-build] $ /bin/bash -xe /tmp/jenkins270815349558282512.sh 08:54:29 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 08:54:29 + cd src 08:54:29 + export OMERO_BRANCH=merge_ci 08:54:29 + OMERO_BRANCH=merge_ci 08:54:29 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 08:54:29 + source /home/omero/settings.env 08:54:29 ++ OMERO_DB_HOST=pg 08:54:29 ++ OMERO_DB_USER=postgres 08:54:29 ++ OMERO_DB_PASS= 08:54:29 ++ OMERO_ROOT_PASS=omero 08:54:29 ++ OMERO_DATA_DIR=/OMERO 08:54:29 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:54:29 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 08:54:32 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 08:54:34 Collecting zeroc-ice==3.6.5 08:54:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 08:54:37 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 08:54:37 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:54:37 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 08:54:37 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0) 08:54:38 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 08:54:38 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 08:54:38 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 08:54:38 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 08:54:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 08:54:38 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 08:54:38 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 08:54:38 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 08:54:38 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 08:54:38 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 08:54:38 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 08:54:38 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 08:54:38 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 08:54:38 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 08:54:38 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:54:38 + source docs/hudson/OMERO.sh 08:54:38 ++ set -e 08:54:38 ++ set -u 08:54:38 ++ set -x 08:54:38 ++ source docs/hudson/functions.sh 08:54:38 ++ echo Building merge_ci 08:54:38 Building merge_ci 08:54:38 ++ python3 ./build.py build-dev release-all 08:54:38 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:54:39 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:54:40 08:54:40 check-ivy: 08:54:40 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 08:54:40 Created dir: /home/omero/workspace/OMERO-build/src/target 08:54:41 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:54:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:54:42 08:54:42 build-scons: 08:54:42 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:54:43 No sub-builds to iterate on 08:54:43 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:54:43 08:54:43 buildlist: 08:54:43 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:54:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:54:43 08:54:43 clean: 08:54:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:43 08:54:43 python-clean: 08:54:43 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:54:43 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-486-6e4e8b4411-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:54:43 warnings.warn( 08:54:44 running clean 08:54:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:54:44 08:54:44 python-clean: 08:54:44 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:54:44 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-486-6e4e8b4411-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:54:44 warnings.warn( 08:54:44 running clean 08:54:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:54:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:54:44 08:54:44 python-clean: 08:54:44 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:54:44 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-486-6e4e8b4411-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:54:44 warnings.warn( 08:54:44 running clean 08:54:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 08:54:44 Deleting directory /home/omero/workspace/OMERO-build/src/target 08:54:45 08:54:45 build-scons: 08:54:45 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:54:45 08:54:45 build: 08:54:45 No sub-builds to iterate on 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:54:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:54:45 08:54:45 tools-init: 08:54:45 no-op 08:54:45 08:54:45 retrieve: 08:54:45 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:54:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:24 08:55:24 prepare: 08:55:24 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:55:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:55:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:55:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:55:24 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:55:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:55:24 08:55:24 pre-compile: 08:55:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:55:24 08:55:24 compile: 08:55:24 no-op 08:55:24 08:55:24 package: 08:55:24 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:55:25 08:55:25 install: 08:55:25 :: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-486-6e4e8b4411-ice36 :: integration :: Wed Jul 24 08:54:45 UTC 2024 08:55:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:55:25 :: publishing :: omero#omero_client 08:55:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-486-6e4e8b4411-ice36/omero_client-5.6.3-486-6e4e8b4411-ice36.jar 08:55:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-486-6e4e8b4411-ice36/omero_client-5.6.3-486-6e4e8b4411-ice36.xml 08:55:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:25 08:55:25 retrieve: 08:55:25 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:55:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:26 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:55:26 08:55:26 dist: 08:55:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:55:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:55:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:55:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:55:26 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:55:26 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 08:55:26 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:55:26 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:55:26 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:55:26 08:55:26 copy-licenses: 08:55:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:55:26 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:55:26 08:55:26 copy-history: 08:55:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:55:26 08:55:26 copy-etc: 08:55:26 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:55:27 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:55:27 08:55:27 copy-sql: 08:55:27 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:55:39 08:55:39 copy-server: 08:55:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 08:55:39 08:55:39 copy-client: 08:55:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:55:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 08:55:41 08:55:41 update-version: 08:55:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:55:41 08:55:41 create-workdirs: 08:55:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:55:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:55:41 08:55:41 copy-luts: 08:55:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:55:41 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:55:41 08:55:41 test-compile: 08:55:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:55:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:55:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:55:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:55:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:55:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:55:42 08:55:42 testng-init: 08:55:42 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:55:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:45 08:55:45,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 08:55:45 08:55:45,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - No custom configurators were discovered as a service. 08:55:45 08:55:45,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:55:45 08:55:45,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:55:45 08:55:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:55:45 08:55:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:55:45 08:55:45,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:55:45 08:55:45,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:55:45 08:55:45,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:55:45 08:55:45,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:55:45 08:55:45,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:55:45 08:55:45,309 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5735f981 - Resource [logback.xml] occurs multiple times on the classpath. 08:55:45 08:55:45,309 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5735f981 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:55:45 08:55:45,309 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5735f981 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:55:45 08:55:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:55:45 08:55:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:55:45 08:55:45,529 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:55:45 08:55:45,531 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7f4c8611 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:55:45 08:55:45,531 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7f4c8611 - Please move "immediateFlush" property into the enclosing appender. 08:55:45 08:55:45,591 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7f4c8611 - Setting the "immediateFlush" property of the enclosing appender to true 08:55:45 08:55:45,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:55:45 08:55:45,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:55:45 08:55:45,592 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:55:45 08:55:45,592 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:55:45 08:55:45,592 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:55:45 08:55:45,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:55:45 08:55:45,593 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@767bd4ca - End of configuration. 08:55:45 08:55:45,595 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30cd738c - Registering current configuration as safe fallback point 08:55:45 08:55:45,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:55:45 08:55:45 lifecycle.test-compile: 08:55:45 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:55:45 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:55:46 warning: [options] bootstrap class path not set in conjunction with -source 8 08:55:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:50 import omero.grid.RawAccessRequest; 08:55:50 ^ 08:55:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:50 import omero.grid.RawAccessRequest; 08:55:50 ^ 08:55:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:50 import omero.grid.RawAccessRequest; 08:55:50 ^ 08:55:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:50 import omero.model.ImportJob; 08:55:50 ^ 08:55:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:55:50 import omero.model.ImportJobI; 08:55:50 ^ 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:55:51 IObject link = (IObject) linkClass.newInstance(); 08:55:51 ^ 08:55:51 where T is a type-variable: 08:55:51 T extends Object declared in class Class 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:55:51 T copy = (T) obj.getClass().newInstance(); 08:55:51 ^ 08:55:51 where T is a type-variable: 08:55:51 T extends Object declared in class Class 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:51 RawAccessRequest raw = new RawAccessRequest(); 08:55:51 ^ 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:51 RawAccessRequest raw = new RawAccessRequest(); 08:55:51 ^ 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:55:51 raw.repoUuid = legacy.root().getHash().getValue(); 08:55:51 ^ 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:55:51 raw.command = "rm"; 08:55:51 ^ 08:55:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:55:51 raw.args = Arrays.asList(path); 08:55:51 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:55:52 final IObject link = linkClass.newInstance(); 08:55:52 ^ 08:55:52 where T is a type-variable: 08:55:52 T extends Object declared in class Class 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:55:52 originalLink.setChild(annotationClass.newInstance()); 08:55:52 ^ 08:55:52 where T is a type-variable: 08:55:52 T extends Object declared in class Class 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:55:52 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:52 final RawAccessRequest request = new RawAccessRequest(); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:52 final RawAccessRequest request = new RawAccessRequest(); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:55:52 request.repoUuid = repo.root().getHash().getValue(); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:55:52 request.command = "exists"; 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:55:52 request.args = Collections.singletonList(dirPath); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:52 final RawAccessRequest request = new RawAccessRequest(); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:55:52 final RawAccessRequest request = new RawAccessRequest(); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:55:52 request.repoUuid = repo.root().getHash().getValue(); 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:55:52 request.command = "exists"; 08:55:52 ^ 08:55:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:55:52 request.args = Collections.singletonList(dirName); 08:55:52 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:53 final ImportJob importJob = new ImportJobI(); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:55:53 final ImportJob importJob = new ImportJobI(); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:55:53 importJob.setImageName(omero.rtypes.rstring(name)); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:55:53 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:55:53 final String savedName = sent.getImageName().getValue().toString(); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:55:53 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:55:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:55:53 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:55:53 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 RoiResult r = svc.findByImage(image.getId().getValue(), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:55:53 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:55:53 table = svc.getTable(f.getId().getValue()); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 RoiResult r = svc.findByImage(image.getId().getValue(), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:55:53 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:55:53 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:55:53 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:55:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:55:53 svc.getShapeStatsRestricted( 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:55:53 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:53 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:53 request.typesToIgnore = Collections.singletonList("Annotation"); 08:55:53 ^ 08:55:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:55:53 request.typesToIgnore = Collections.singletonList("Annotation"); 08:55:53 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:54 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:54 p2.setRelatedTo(p1); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:54 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:54 pixels1.setRelatedTo(pixels2); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:54 Pixels pixels = pixels1.getRelatedTo(); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:54 Assert.assertNull(pixels1.getRelatedTo()); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:55:54 pixels1.setRelatedTo(pixels2); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:54 Pixels pixels = pixels1.getRelatedTo(); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:55:54 Assert.assertNull(pixels1.getRelatedTo()); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:54 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:55:54 ^ 08:55:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:55:54 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:55:54 ^ 08:55:54 Note: Some input files use unchecked or unsafe operations. 08:55:54 Note: Recompile with -Xlint:unchecked for details. 08:55:54 88 warnings 08:55:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1676562662.tmp 08:55:54 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:55:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:54 :: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-486-6e4e8b4411-ice36 :: integration :: Wed Jul 24 08:55:42 UTC 2024 08:55:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:55:54 :: publishing :: omero#OmeroJava-test 08:55:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-486-6e4e8b4411-ice36.jar 08:55:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-486-6e4e8b4411-ice36.xml 08:55:54 08:55:54 build-eclipse: 08:55:54 No sub-builds to iterate on 08:55:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:55:54 08:55:54 retrieve: 08:55:54 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:55:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:55:57 08:55:57 prepare: 08:55:57 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:55:58 08:55:58 release-clients: 08:55:58 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-486-6e4e8b4411-ice36.zip 08:56:04 08:56:04 release-zip: 08:56:04 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip 08:56:16 08:56:16 BUILD SUCCESSFUL 08:56:16 Total time: 1 minute 36 seconds 08:56:16 ++ '[' -d .git ']' 08:56:16 ++ python3 ./build.py release-src 08:56:16 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:56:16 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:56:16 08:56:16 release-src-git: 08:56:16 Releasing openmicroscopy-5.6.3-486-6e4e8b4411-ice36 08:56:19 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-486-6e4e8b4411-ice36.zip 08:56:19 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-486-6e4e8b4411-ice36-base.zip 08:56:20 08:56:20 BUILD SUCCESSFUL 08:56:20 Total time: 4 seconds 08:56:20 ++ echo BUILD_NUMBER=127 08:56:20 ++ echo OMERO_BRANCH=merge_ci 08:56:20 ++ git_info 08:56:20 +++ git rev-parse HEAD 08:56:20 ++ HEAD=6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 08:56:20 ++ git log --max-count=1 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 08:56:20 ++ env 08:56:20 ++ sort 08:56:21 Archiving artifacts 08:56:48 Finished: SUCCESS