13:04:59 Started by upstream project "Trigger" build number 150 13:04:59 originally caused by: 13:04:59 Started by user devspace 13:04:59 Restarted from build #149, stage OMERO Distribution 13:04:59 Running as SYSTEM 13:04:59 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 13:04:59 The recommended git tool is: NONE 13:04:59 No credentials specified 13:04:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 13:04:59 Fetching changes from the remote Git repository 13:04:59 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 13:04:59 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 13:04:59 > git --version # timeout=10 13:04:59 > git --version # 'git version 2.39.3' 13:04:59 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 13:04:59 > git rev-parse origin/merge_ci^{commit} # timeout=10 13:04:59 Checking out Revision ec16e0d4cdfcca0e50a68db272afe08f144d30c7 (origin/merge_ci) 13:04:59 > git config core.sparsecheckout # timeout=10 13:04:59 > git checkout -f ec16e0d4cdfcca0e50a68db272afe08f144d30c7 # timeout=10 13:04:59 Commit message: "Add version.properties to etc/omero.properties" 13:04:59 > git rev-list --no-walk 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 # timeout=10 13:04:59 Cleaning workspace 13:04:59 > git rev-parse --verify HEAD # timeout=10 13:04:59 Resetting working tree 13:04:59 > git reset --hard # timeout=10 13:04:59 > git clean -fdx # timeout=10 13:05:00 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 126 13:05:00 [OMERO-build] $ /bin/bash -xe /tmp/jenkins14939095359916653496.sh 13:05:00 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 13:05:00 + cd src 13:05:00 + export OMERO_BRANCH=merge_ci 13:05:00 + OMERO_BRANCH=merge_ci 13:05:00 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 13:05:00 + source /home/omero/settings.env 13:05:00 ++ OMERO_DB_HOST=pg 13:05:00 ++ OMERO_DB_USER=postgres 13:05:00 ++ OMERO_DB_PASS= 13:05:00 ++ OMERO_ROOT_PASS=omero 13:05:00 ++ OMERO_DATA_DIR=/OMERO 13:05:00 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:05:00 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 13:05:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 13:05:02 Collecting zeroc-ice==3.6.5 13:05:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 13:05:06 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 13:05:06 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 13:05:06 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 13:05:07 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0) 13:05:07 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 13:05:08 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 13:05:08 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 13:05:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 13:05:08 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 13:05:08 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 13:05:08 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 13:05:08 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 13:05:08 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 13:05:08 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 13:05:08 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 13:05:08 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 13:05:08 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 13:05:08 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 13:05:08 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 13:05:08 + source docs/hudson/OMERO.sh 13:05:08 ++ set -e 13:05:08 ++ set -u 13:05:08 ++ set -x 13:05:08 ++ source docs/hudson/functions.sh 13:05:08 ++ echo Building merge_ci 13:05:08 Building merge_ci 13:05:08 ++ python3 ./build.py build-dev release-all 13:05:08 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 13:05:08 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 13:05:08 13:05:08 check-ivy: 13:05:08 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 13:05:08 Created dir: /home/omero/workspace/OMERO-build/src/target 13:05:09 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:09 13:05:09 build-scons: 13:05:09 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 13:05:09 No sub-builds to iterate on 13:05:09 Entering /home/omero/workspace/OMERO-build/src/components/tools... 13:05:09 13:05:09 buildlist: 13:05:09 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:09 13:05:09 clean: 13:05:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:10 13:05:10 python-clean: 13:05:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:05:10 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-485-ec16e0d4cd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:05:10 warnings.warn( 13:05:10 running clean 13:05:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:05:10 13:05:10 python-clean: 13:05:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:05:10 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-485-ec16e0d4cd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:05:10 warnings.warn( 13:05:10 running clean 13:05:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:10 13:05:10 python-clean: 13:05:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:05:10 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-485-ec16e0d4cd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:05:10 warnings.warn( 13:05:10 running clean 13:05:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 13:05:10 Deleting directory /home/omero/workspace/OMERO-build/src/target 13:05:10 13:05:10 build-scons: 13:05:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 13:05:10 13:05:10 build: 13:05:10 No sub-builds to iterate on 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:05:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:05:10 13:05:10 tools-init: 13:05:10 no-op 13:05:11 13:05:11 retrieve: 13:05:11 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:11 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:21 13:05:21 prepare: 13:05:21 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 13:05:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 13:05:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 13:05:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:05:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:05:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:05:21 13:05:21 pre-compile: 13:05:21 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:21 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:21 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:22 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:22 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:05:22 13:05:22 compile: 13:05:22 no-op 13:05:22 13:05:22 package: 13:05:22 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 13:05:22 13:05:22 install: 13:05:22 :: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-485-ec16e0d4cd-ice36 :: integration :: Wed Jul 24 13:05:10 UTC 2024 13:05:22 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 13:05:22 :: publishing :: omero#omero_client 13:05:22 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-485-ec16e0d4cd-ice36/omero_client-5.6.3-485-ec16e0d4cd-ice36.jar 13:05:22 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-485-ec16e0d4cd-ice36/omero_client-5.6.3-485-ec16e0d4cd-ice36.xml 13:05:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:22 13:05:22 retrieve: 13:05:22 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:23 Entering /home/omero/workspace/OMERO-build/src/components/tools... 13:05:23 13:05:23 dist: 13:05:23 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 13:05:23 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 13:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 13:05:23 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 13:05:23 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 13:05:23 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 13:05:23 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 13:05:23 Entering /home/omero/workspace/OMERO-build/src/components/tests... 13:05:23 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 13:05:23 13:05:23 copy-licenses: 13:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 13:05:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 13:05:23 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 13:05:23 13:05:23 copy-history: 13:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 13:05:23 13:05:23 copy-etc: 13:05:23 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 13:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 13:05:23 13:05:23 copy-sql: 13:05:23 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 13:05:29 13:05:29 copy-server: 13:05:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 13:05:29 13:05:29 copy-client: 13:05:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 13:05:30 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 13:05:31 13:05:31 update-version: 13:05:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 13:05:31 13:05:31 create-workdirs: 13:05:31 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 13:05:31 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 13:05:31 13:05:31 copy-luts: 13:05:31 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 13:05:31 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 13:05:31 13:05:31 test-compile: 13:05:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 13:05:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:05:31 13:05:31 testng-init: 13:05:31 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:34 13:05:33,947 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 13:05:34 13:05:33,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - No custom configurators were discovered as a service. 13:05:34 13:05:33,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 13:05:34 13:05:33,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 13:05:34 13:05:33,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 13:05:34 13:05:33,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 13:05:34 13:05:33,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 13:05:34 13:05:33,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 13:05:34 13:05:33,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 13:05:34 13:05:33,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 13:05:34 13:05:33,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 13:05:34 13:05:33,958 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c140c7c - Resource [logback.xml] occurs multiple times on the classpath. 13:05:34 13:05:33,958 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c140c7c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 13:05:34 13:05:33,958 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c140c7c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 13:05:34 13:05:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 13:05:34 13:05:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 13:05:34 13:05:34,179 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 13:05:34 13:05:34,181 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b4989f6 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 13:05:34 13:05:34,181 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b4989f6 - Please move "immediateFlush" property into the enclosing appender. 13:05:34 13:05:34,242 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b4989f6 - Setting the "immediateFlush" property of the enclosing appender to true 13:05:34 13:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 13:05:34 13:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 13:05:34 13:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 13:05:34 13:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 13:05:34 13:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 13:05:34 13:05:34,244 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 13:05:34 13:05:34,245 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5f6e202 - End of configuration. 13:05:34 13:05:34,247 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7046ce6a - Registering current configuration as safe fallback point 13:05:34 13:05:34,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 13:05:34 13:05:34 lifecycle.test-compile: 13:05:34 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:05:34 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:05:34 warning: [options] bootstrap class path not set in conjunction with -source 8 13:05:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:35 import omero.grid.RawAccessRequest; 13:05:35 ^ 13:05:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:36 import omero.grid.RawAccessRequest; 13:05:36 ^ 13:05:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:36 import omero.grid.RawAccessRequest; 13:05:36 ^ 13:05:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:36 import omero.model.ImportJob; 13:05:36 ^ 13:05:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 13:05:36 import omero.model.ImportJobI; 13:05:36 ^ 13:05:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 13:05:36 IObject link = (IObject) linkClass.newInstance(); 13:05:36 ^ 13:05:36 where T is a type-variable: 13:05:36 T extends Object declared in class Class 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 13:05:37 T copy = (T) obj.getClass().newInstance(); 13:05:37 ^ 13:05:37 where T is a type-variable: 13:05:37 T extends Object declared in class Class 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:37 RawAccessRequest raw = new RawAccessRequest(); 13:05:37 ^ 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:37 RawAccessRequest raw = new RawAccessRequest(); 13:05:37 ^ 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:05:37 raw.repoUuid = legacy.root().getHash().getValue(); 13:05:37 ^ 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 13:05:37 raw.command = "rm"; 13:05:37 ^ 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 13:05:37 raw.args = Arrays.asList(path); 13:05:37 ^ 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 13:05:37 final IObject link = linkClass.newInstance(); 13:05:37 ^ 13:05:37 where T is a type-variable: 13:05:37 T extends Object declared in class Class 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 13:05:37 originalLink.setChild(annotationClass.newInstance()); 13:05:37 ^ 13:05:37 where T is a type-variable: 13:05:37 T extends Object declared in class Class 13:05:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:05:37 RoiResult r = svc.findByImage(id, new RoiOptions()); 13:05:37 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:38 final RawAccessRequest request = new RawAccessRequest(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:38 final RawAccessRequest request = new RawAccessRequest(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:05:38 request.repoUuid = repo.root().getHash().getValue(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 13:05:38 request.command = "exists"; 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 13:05:38 request.args = Collections.singletonList(dirPath); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:38 final RawAccessRequest request = new RawAccessRequest(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:05:38 final RawAccessRequest request = new RawAccessRequest(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:05:38 request.repoUuid = repo.root().getHash().getValue(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 13:05:38 request.command = "exists"; 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 13:05:38 request.args = Collections.singletonList(dirName); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:38 final ImportJob importJob = new ImportJobI(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 13:05:38 final ImportJob importJob = new ImportJobI(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 13:05:38 importJob.setImageName(omero.rtypes.rstring(name)); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 13:05:38 importJob.setImageDescription(omero.rtypes.rstring(desc)); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 13:05:38 final String savedName = sent.getImageName().getValue().toString(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 13:05:38 final String savedDesc = sent.getImageDescription().getValue().toString(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 13:05:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 13:05:38 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 13:05:38 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 RoiResult r = svc.findByImage(image.getId().getValue(), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 13:05:38 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 13:05:38 table = svc.getTable(f.getId().getValue()); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 RoiResult r = svc.findByImage(image.getId().getValue(), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 13:05:38 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 13:05:38 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 13:05:38 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 13:05:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 13:05:38 svc.getShapeStatsRestricted( 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 13:05:38 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 13:05:38 ^ 13:05:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 13:05:38 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:39 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:39 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:39 request.typesToIgnore = Collections.singletonList("Annotation"); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:05:39 request.typesToIgnore = Collections.singletonList("Annotation"); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:39 p2.setRelatedTo(p1); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:39 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:39 pixels1.setRelatedTo(pixels2); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:39 Pixels pixels = pixels1.getRelatedTo(); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:39 Assert.assertNull(pixels1.getRelatedTo()); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:05:39 pixels1.setRelatedTo(pixels2); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:39 Pixels pixels = pixels1.getRelatedTo(); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:05:39 Assert.assertNull(pixels1.getRelatedTo()); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:39 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:05:39 ^ 13:05:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:05:39 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:05:39 ^ 13:05:39 Note: Some input files use unchecked or unsafe operations. 13:05:39 Note: Recompile with -Xlint:unchecked for details. 13:05:39 88 warnings 13:05:39 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1524450615.tmp 13:05:39 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 13:05:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:39 :: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-485-ec16e0d4cd-ice36 :: integration :: Wed Jul 24 13:05:31 UTC 2024 13:05:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 13:05:39 :: publishing :: omero#OmeroJava-test 13:05:39 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-485-ec16e0d4cd-ice36.jar 13:05:39 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-485-ec16e0d4cd-ice36.xml 13:05:39 13:05:39 build-eclipse: 13:05:39 No sub-builds to iterate on 13:05:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:05:39 13:05:39 retrieve: 13:05:39 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 13:05:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:05:42 13:05:42 prepare: 13:05:42 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 13:05:43 13:05:43 release-clients: 13:05:43 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-485-ec16e0d4cd-ice36.zip 13:05:49 13:05:49 release-zip: 13:05:49 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip 13:06:01 13:06:01 BUILD SUCCESSFUL 13:06:01 Total time: 52 seconds 13:06:01 ++ '[' -d .git ']' 13:06:01 ++ python3 ./build.py release-src 13:06:01 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 13:06:01 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 13:06:01 13:06:01 release-src-git: 13:06:01 Releasing openmicroscopy-5.6.3-485-ec16e0d4cd-ice36 13:06:03 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-485-ec16e0d4cd-ice36.zip 13:06:03 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-485-ec16e0d4cd-ice36-base.zip 13:06:04 13:06:04 BUILD SUCCESSFUL 13:06:04 Total time: 3 seconds 13:06:04 ++ echo BUILD_NUMBER=128 13:06:04 ++ echo OMERO_BRANCH=merge_ci 13:06:04 ++ git_info 13:06:04 +++ git rev-parse HEAD 13:06:04 ++ HEAD=ec16e0d4cdfcca0e50a68db272afe08f144d30c7 13:06:04 ++ git log --max-count=1 ec16e0d4cdfcca0e50a68db272afe08f144d30c7 13:06:04 ++ env 13:06:04 ++ sort 13:06:04 Archiving artifacts 13:06:32 Finished: SUCCESS