00:36:39 Started by upstream project "Trigger" build number 157 00:36:39 originally caused by: 00:36:39 Started by timer 00:36:39 Running as SYSTEM 00:36:39 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:36:39 The recommended git tool is: NONE 00:36:39 No credentials specified 00:36:39 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:36:39 Fetching changes from the remote Git repository 00:36:39 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:36:39 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:36:39 > git --version # timeout=10 00:36:39 > git --version # 'git version 2.39.3' 00:36:39 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:36:44 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:36:44 Checking out Revision 26038335bf75196bb5046360bcb452991aedcb2c (origin/merge_ci) 00:36:44 > git config core.sparsecheckout # timeout=10 00:36:44 > git checkout -f 26038335bf75196bb5046360bcb452991aedcb2c # timeout=10 00:36:44 Commit message: "Add version.properties to etc/omero.properties" 00:36:44 > git rev-list --no-walk 3d2e16553a6c1ef19dd2b4cdd4b8f3bb6142d5f0 # timeout=10 00:36:44 Cleaning workspace 00:36:44 > git rev-parse --verify HEAD # timeout=10 00:36:44 Resetting working tree 00:36:44 > git reset --hard # timeout=10 00:36:44 > git clean -fdx # timeout=10 00:36:46 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 129 00:36:46 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13681646780560476683.sh 00:36:46 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 00:36:46 + cd src 00:36:46 + export OMERO_BRANCH=merge_ci 00:36:46 + OMERO_BRANCH=merge_ci 00:36:46 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:36:46 + source /home/omero/settings.env 00:36:46 ++ OMERO_DB_HOST=pg 00:36:46 ++ OMERO_DB_USER=postgres 00:36:46 ++ OMERO_DB_PASS= 00:36:46 ++ OMERO_ROOT_PASS=omero 00:36:46 ++ OMERO_DATA_DIR=/OMERO 00:36:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:36:46 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:36:50 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:36:51 Collecting zeroc-ice==3.6.5 00:36:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:36:53 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 00:36:53 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 00:36:53 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 00:36:54 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0) 00:36:54 Collecting setuptools 00:36:54 Using cached setuptools-72.1.0-py3-none-any.whl (2.3 MB) 00:36:54 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 00:36:54 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 00:36:54 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:36:54 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 00:36:54 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:36:54 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 00:36:54 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 00:36:54 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 00:36:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:36:54 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 00:36:54 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 00:36:54 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 00:36:54 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 00:36:55 Installing collected packages: setuptools 00:36:55 Attempting uninstall: setuptools 00:36:55 Found existing installation: setuptools 71.1.0 00:36:55 Uninstalling setuptools-71.1.0: 00:36:56 Successfully uninstalled setuptools-71.1.0 00:36:57 Successfully installed setuptools-72.1.0 00:36:57 WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available. 00:36:57 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 00:36:57 + source docs/hudson/OMERO.sh 00:36:57 ++ set -e 00:36:57 ++ set -u 00:36:57 ++ set -x 00:36:57 ++ source docs/hudson/functions.sh 00:36:57 ++ echo Building merge_ci 00:36:57 Building merge_ci 00:36:57 ++ python3 ./build.py build-dev release-all 00:36:57 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 00:36:57 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:36:58 00:36:58 check-ivy: 00:36:58 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:36:58 Created dir: /home/omero/workspace/OMERO-build/src/target 00:36:59 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 00:36:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:00 00:37:00 build-scons: 00:37:00 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:37:01 No sub-builds to iterate on 00:37:01 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:37:01 00:37:01 buildlist: 00:37:01 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 00:37:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:02 00:37:02 clean: 00:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:02 00:37:02 python-clean: 00:37:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:37:02 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-492-26038335bf-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:37:02 warnings.warn( 00:37:02 running clean 00:37:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:37:02 00:37:02 python-clean: 00:37:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:37:02 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-492-26038335bf-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:37:02 warnings.warn( 00:37:02 running clean 00:37:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:02 00:37:02 python-clean: 00:37:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:37:02 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-492-26038335bf-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:37:02 warnings.warn( 00:37:02 running clean 00:37:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:37:03 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:37:03 00:37:03 build-scons: 00:37:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:37:03 00:37:03 build: 00:37:03 No sub-builds to iterate on 00:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:37:03 00:37:03 tools-init: 00:37:03 no-op 00:37:03 00:37:03 retrieve: 00:37:03 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 00:37:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:19 00:37:19 prepare: 00:37:19 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:37:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:37:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:37:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:37:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:37:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:37:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:37:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:37:19 00:37:19 pre-compile: 00:37:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:37:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:37:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:37:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:37:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:37:19 00:37:19 compile: 00:37:19 no-op 00:37:19 00:37:19 package: 00:37:19 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:37:20 00:37:20 install: 00:37:20 :: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-492-26038335bf-ice36 :: integration :: Tue Jul 30 00:37:03 UTC 2024 00:37:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:37:20 :: publishing :: omero#omero_client 00:37:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-492-26038335bf-ice36/omero_client-5.6.3-492-26038335bf-ice36.jar 00:37:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-492-26038335bf-ice36/omero_client-5.6.3-492-26038335bf-ice36.xml 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:20 00:37:20 retrieve: 00:37:20 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 00:37:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:37:20 00:37:20 dist: 00:37:20 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:37:20 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:37:20 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:37:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:37:20 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:37:20 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 00:37:20 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:37:20 00:37:20 copy-licenses: 00:37:20 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:37:20 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:37:21 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:37:21 00:37:21 copy-history: 00:37:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:37:21 00:37:21 copy-etc: 00:37:21 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:37:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:37:21 00:37:21 copy-sql: 00:37:21 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:37:31 00:37:31 copy-server: 00:37:31 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 00:37:31 00:37:31 copy-client: 00:37:31 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:37:34 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 00:37:34 00:37:34 update-version: 00:37:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:37:34 00:37:34 create-workdirs: 00:37:34 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:37:34 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:37:34 00:37:34 copy-luts: 00:37:34 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:37:34 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:37:34 00:37:34 test-compile: 00:37:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:37:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:35 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:37:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:37:35 00:37:35 testng-init: 00:37:35 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 00:37:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:39 00:37:38,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 00:37:39 00:37:38,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - No custom configurators were discovered as a service. 00:37:39 00:37:38,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:37:39 00:37:38,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:37:39 00:37:38,812 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:37:39 00:37:38,812 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:37:39 00:37:38,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:37:39 00:37:38,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:37:39 00:37:38,815 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:37:39 00:37:38,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:37:39 00:37:38,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:37:39 00:37:38,816 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a18bbeb - Resource [logback.xml] occurs multiple times on the classpath. 00:37:39 00:37:38,816 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a18bbeb - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:37:39 00:37:38,816 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a18bbeb - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:37:39 00:37:39,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:37:39 00:37:39,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:37:39 00:37:39,075 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:37:39 00:37:39,077 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9f5022c - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:37:39 00:37:39,077 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9f5022c - Please move "immediateFlush" property into the enclosing appender. 00:37:39 00:37:39,141 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9f5022c - Setting the "immediateFlush" property of the enclosing appender to true 00:37:39 00:37:39,142 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:37:39 00:37:39,142 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:37:39 00:37:39,142 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:37:39 00:37:39,142 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:37:39 00:37:39,142 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:37:39 00:37:39,142 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:37:39 00:37:39,144 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@9caa933 - End of configuration. 00:37:39 00:37:39,146 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@290ab243 - Registering current configuration as safe fallback point 00:37:39 00:37:39,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 331 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:37:39 00:37:39 lifecycle.test-compile: 00:37:39 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:37:39 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:37:39 warning: [options] bootstrap class path not set in conjunction with -source 8 00:37:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:42 import omero.grid.RawAccessRequest; 00:37:42 ^ 00:37:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:42 import omero.grid.RawAccessRequest; 00:37:42 ^ 00:37:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:42 import omero.grid.RawAccessRequest; 00:37:42 ^ 00:37:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:37:42 import omero.model.ImportJob; 00:37:42 ^ 00:37:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:37:42 import omero.model.ImportJobI; 00:37:42 ^ 00:37:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:37:43 IObject link = (IObject) linkClass.newInstance(); 00:37:43 ^ 00:37:43 where T is a type-variable: 00:37:43 T extends Object declared in class Class 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:37:44 T copy = (T) obj.getClass().newInstance(); 00:37:44 ^ 00:37:44 where T is a type-variable: 00:37:44 T extends Object declared in class Class 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:44 RawAccessRequest raw = new RawAccessRequest(); 00:37:44 ^ 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:44 RawAccessRequest raw = new RawAccessRequest(); 00:37:44 ^ 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:37:44 raw.repoUuid = legacy.root().getHash().getValue(); 00:37:44 ^ 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:37:44 raw.command = "rm"; 00:37:44 ^ 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:37:44 raw.args = Arrays.asList(path); 00:37:44 ^ 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:37:44 final IObject link = linkClass.newInstance(); 00:37:44 ^ 00:37:44 where T is a type-variable: 00:37:44 T extends Object declared in class Class 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:37:44 originalLink.setChild(annotationClass.newInstance()); 00:37:44 ^ 00:37:44 where T is a type-variable: 00:37:44 T extends Object declared in class Class 00:37:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:37:44 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:37:44 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:45 final RawAccessRequest request = new RawAccessRequest(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:45 final RawAccessRequest request = new RawAccessRequest(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:37:45 request.repoUuid = repo.root().getHash().getValue(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:37:45 request.command = "exists"; 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:37:45 request.args = Collections.singletonList(dirPath); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:45 final RawAccessRequest request = new RawAccessRequest(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:37:45 final RawAccessRequest request = new RawAccessRequest(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:37:45 request.repoUuid = repo.root().getHash().getValue(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:37:45 request.command = "exists"; 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:37:45 request.args = Collections.singletonList(dirName); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:37:45 final ImportJob importJob = new ImportJobI(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:37:45 final ImportJob importJob = new ImportJobI(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:37:45 importJob.setImageName(omero.rtypes.rstring(name)); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:37:45 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:37:45 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:37:45 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:37:45 final String savedName = sent.getImageName().getValue().toString(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:37:45 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:37:45 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:37:45 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:37:45 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:37:45 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 RoiResult r = svc.findByImage(image.getId().getValue(), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:37:45 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:37:45 table = svc.getTable(f.getId().getValue()); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 RoiResult r = svc.findByImage(image.getId().getValue(), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:37:45 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:37:45 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:37:45 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:37:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:37:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:37:45 svc.getShapeStatsRestricted( 00:37:45 ^ 00:37:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:37:45 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:37:45 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:37:46 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:37:46 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:37:46 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:37:46 request.typesToIgnore = Collections.singletonList("Annotation"); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:37:46 request.typesToIgnore = Collections.singletonList("Annotation"); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:37:46 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:37:46 p2.setRelatedTo(p1); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:37:46 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:37:46 pixels1.setRelatedTo(pixels2); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:37:46 Pixels pixels = pixels1.getRelatedTo(); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:37:46 Assert.assertNull(pixels1.getRelatedTo()); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:37:46 pixels1.setRelatedTo(pixels2); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:37:46 Pixels pixels = pixels1.getRelatedTo(); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:37:46 Assert.assertNull(pixels1.getRelatedTo()); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:46 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:37:46 ^ 00:37:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:37:46 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:37:46 ^ 00:37:46 Note: Some input files use unchecked or unsafe operations. 00:37:46 Note: Recompile with -Xlint:unchecked for details. 00:37:46 88 warnings 00:37:46 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1008678375.tmp 00:37:46 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:37:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:46 :: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-492-26038335bf-ice36 :: integration :: Tue Jul 30 00:37:35 UTC 2024 00:37:46 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:37:46 :: publishing :: omero#OmeroJava-test 00:37:46 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-492-26038335bf-ice36.jar 00:37:46 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-492-26038335bf-ice36.xml 00:37:46 00:37:46 build-eclipse: 00:37:46 No sub-builds to iterate on 00:37:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:37:47 00:37:47 retrieve: 00:37:47 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 00:37:47 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:49 00:37:49 prepare: 00:37:49 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:37:51 00:37:51 release-clients: 00:37:51 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-492-26038335bf-ice36.zip 00:37:57 00:37:57 release-zip: 00:37:57 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-492-26038335bf-ice36.zip 00:38:09 00:38:09 BUILD SUCCESSFUL 00:38:09 Total time: 1 minute 11 seconds 00:38:09 ++ '[' -d .git ']' 00:38:09 ++ python3 ./build.py release-src 00:38:09 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 00:38:09 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:38:10 00:38:10 release-src-git: 00:38:10 Releasing openmicroscopy-5.6.3-492-26038335bf-ice36 00:38:12 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-492-26038335bf-ice36.zip 00:38:12 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-492-26038335bf-ice36-base.zip 00:38:13 00:38:13 BUILD SUCCESSFUL 00:38:13 Total time: 3 seconds 00:38:13 ++ echo BUILD_NUMBER=131 00:38:13 ++ echo OMERO_BRANCH=merge_ci 00:38:13 ++ git_info 00:38:13 +++ git rev-parse HEAD 00:38:13 ++ HEAD=26038335bf75196bb5046360bcb452991aedcb2c 00:38:13 ++ git log --max-count=1 26038335bf75196bb5046360bcb452991aedcb2c 00:38:13 ++ env 00:38:13 ++ sort 00:38:13 Archiving artifacts 00:38:42 Finished: SUCCESS