17:29:27 Started by upstream project "Trigger" build number 187 17:29:27 originally caused by: 17:29:27 Started by user devspace 17:29:27 Running as SYSTEM 17:29:27 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 17:29:27 The recommended git tool is: NONE 17:29:27 No credentials specified 17:29:27 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 17:29:27 Fetching changes from the remote Git repository 17:29:27 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 17:29:27 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 17:29:27 > git --version # timeout=10 17:29:27 > git --version # 'git version 2.39.3' 17:29:27 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 17:29:32 > git rev-parse origin/merge_ci^{commit} # timeout=10 17:29:32 Checking out Revision 01e94f4734770af20dd1dc6afbeebffdc97f8d71 (origin/merge_ci) 17:29:32 > git config core.sparsecheckout # timeout=10 17:29:32 > git checkout -f 01e94f4734770af20dd1dc6afbeebffdc97f8d71 # timeout=10 17:29:33 Commit message: "Add version.properties to etc/omero.properties" 17:29:33 > git rev-list --no-walk 84affee5bf5ff57c19858749aa4fe5b8764aa0b7 # timeout=10 17:29:33 Cleaning workspace 17:29:33 > git rev-parse --verify HEAD # timeout=10 17:29:33 Resetting working tree 17:29:33 > git reset --hard # timeout=10 17:29:34 > git clean -fdx # timeout=10 17:29:34 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 156 17:29:34 [OMERO-build] $ /bin/bash -xe /tmp/jenkins247822682186720259.sh 17:29:34 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 17:29:34 + cd src 17:29:34 + export OMERO_BRANCH=merge_ci 17:29:34 + OMERO_BRANCH=merge_ci 17:29:34 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 17:29:34 + source /home/omero/settings.env 17:29:34 ++ OMERO_DB_HOST=pg 17:29:34 ++ OMERO_DB_USER=postgres 17:29:34 ++ OMERO_DB_PASS= 17:29:34 ++ OMERO_ROOT_PASS=omero 17:29:34 ++ OMERO_DATA_DIR=/OMERO 17:29:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 17:29:34 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 17:29:37 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 17:29:39 Collecting zeroc-ice==3.6.5 17:29:40 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 17:29:41 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 17:29:41 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 17:29:41 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 17:29:42 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (73.0.1) 17:29:42 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 17:29:43 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 17:29:43 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 17:29:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 17:29:43 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 17:29:43 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 17:29:43 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 17:29:43 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 17:29:43 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 17:29:43 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 17:29:43 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 17:29:43 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 17:29:43 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 17:29:43 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 17:29:43 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 17:29:43 + source docs/hudson/OMERO.sh 17:29:43 ++ set -e 17:29:43 ++ set -u 17:29:43 ++ set -x 17:29:43 ++ source docs/hudson/functions.sh 17:29:43 ++ echo Building merge_ci 17:29:43 Building merge_ci 17:29:43 ++ python3 ./build.py build-dev release-all 17:29:43 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 17:29:43 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 17:29:43 17:29:43 check-ivy: 17:29:43 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 17:29:43 Created dir: /home/omero/workspace/OMERO-build/src/target 17:29:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:29:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:29:45 17:29:45 build-scons: 17:29:45 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 17:29:45 No sub-builds to iterate on 17:29:45 Entering /home/omero/workspace/OMERO-build/src/components/tools... 17:29:45 17:29:45 buildlist: 17:29:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:29:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:29:45 17:29:45 clean: 17:29:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:29:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:29:45 17:29:45 python-clean: 17:29:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 17:29:45 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-500-01e94f4734-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 17:29:45 warnings.warn( 17:29:45 running clean 17:29:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 17:29:46 17:29:46 python-clean: 17:29:46 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 17:29:46 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-500-01e94f4734-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 17:29:46 warnings.warn( 17:29:46 running clean 17:29:46 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:29:46 17:29:46 python-clean: 17:29:46 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 17:29:46 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-500-01e94f4734-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 17:29:46 warnings.warn( 17:29:46 running clean 17:29:46 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 17:29:46 Deleting directory /home/omero/workspace/OMERO-build/src/target 17:29:46 17:29:46 build-scons: 17:29:46 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 17:29:46 17:29:46 build: 17:29:46 No sub-builds to iterate on 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 17:29:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:29:46 17:29:46 tools-init: 17:29:46 no-op 17:29:47 17:29:47 retrieve: 17:29:47 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:29:47 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:29:47 WARNING: An illegal reflective access operation has occurred 17:29:47 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 17:29:47 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 17:29:47 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 17:29:47 WARNING: All illegal access operations will be denied in a future release 17:30:17 17:30:17 prepare: 17:30:17 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 17:30:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 17:30:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 17:30:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:30:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:30:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 17:30:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:30:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:30:17 17:30:17 pre-compile: 17:30:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:30:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:30:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:30:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:30:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:30:17 17:30:17 compile: 17:30:17 no-op 17:30:17 17:30:17 package: 17:30:17 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 17:30:18 17:30:18 install: 17:30:18 :: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-500-01e94f4734-ice36 :: integration :: Tue Aug 27 17:29:46 UTC 2024 17:30:18 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 17:30:18 :: publishing :: omero#omero_client 17:30:18 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-500-01e94f4734-ice36/omero_client-5.6.3-500-01e94f4734-ice36.jar 17:30:18 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-500-01e94f4734-ice36/omero_client-5.6.3-500-01e94f4734-ice36.xml 17:30:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:30:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:30:18 17:30:18 retrieve: 17:30:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:30:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:30:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 17:30:18 17:30:18 dist: 17:30:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 17:30:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 17:30:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 17:30:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 17:30:18 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 17:30:18 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 17:30:18 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 17:30:18 Entering /home/omero/workspace/OMERO-build/src/components/tests... 17:30:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 17:30:18 17:30:18 copy-licenses: 17:30:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 17:30:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 17:30:18 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 17:30:18 17:30:18 copy-history: 17:30:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 17:30:18 17:30:18 copy-etc: 17:30:18 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 17:30:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 17:30:18 17:30:18 copy-sql: 17:30:18 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 17:30:27 17:30:27 copy-server: 17:30:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 17:30:28 17:30:28 copy-client: 17:30:28 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 17:30:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 17:30:29 17:30:29 update-version: 17:30:29 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 17:30:29 17:30:29 create-workdirs: 17:30:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 17:30:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 17:30:29 17:30:29 copy-luts: 17:30:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 17:30:29 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 17:30:29 17:30:29 test-compile: 17:30:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 17:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:30:30 17:30:30 testng-init: 17:30:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:30:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:30:33 17:30:33,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 17:30:33 17:30:33,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - No custom configurators were discovered as a service. 17:30:33 17:30:33,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 17:30:33 17:30:33,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 17:30:33 17:30:33,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 17:30:33 17:30:33,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 17:30:33 17:30:33,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 17:30:33 17:30:33,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 17:30:33 17:30:33,415 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 17:30:33 17:30:33,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 17:30:33 17:30:33,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 17:30:33 17:30:33,417 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6b7945e1 - Resource [logback.xml] occurs multiple times on the classpath. 17:30:33 17:30:33,417 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6b7945e1 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 17:30:33 17:30:33,417 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6b7945e1 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 17:30:33 17:30:33,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 17:30:33 17:30:33,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 17:30:33 17:30:33,691 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 17:30:33 17:30:33,693 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2bc41bcb - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 17:30:33 17:30:33,693 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2bc41bcb - Please move "immediateFlush" property into the enclosing appender. 17:30:33 17:30:33,761 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2bc41bcb - Setting the "immediateFlush" property of the enclosing appender to true 17:30:33 17:30:33,762 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 17:30:33 17:30:33,762 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 17:30:33 17:30:33,762 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 17:30:33 17:30:33,762 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 17:30:33 17:30:33,762 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 17:30:33 17:30:33,762 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 17:30:33 17:30:33,763 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@354aaf03 - End of configuration. 17:30:33 17:30:33,766 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@63e31b89 - Registering current configuration as safe fallback point 17:30:33 17:30:33,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5390bdee - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 351 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 17:30:33 17:30:33 lifecycle.test-compile: 17:30:33 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 17:30:33 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 17:30:34 warning: [options] bootstrap class path not set in conjunction with -source 8 17:30:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:35 import omero.grid.RawAccessRequest; 17:30:35 ^ 17:30:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:35 import omero.grid.RawAccessRequest; 17:30:35 ^ 17:30:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:36 import omero.grid.RawAccessRequest; 17:30:36 ^ 17:30:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 17:30:36 import omero.model.ImportJob; 17:30:36 ^ 17:30:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 17:30:36 import omero.model.ImportJobI; 17:30:36 ^ 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 17:30:37 IObject link = (IObject) linkClass.newInstance(); 17:30:37 ^ 17:30:37 where T is a type-variable: 17:30:37 T extends Object declared in class Class 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 17:30:37 T copy = (T) obj.getClass().newInstance(); 17:30:37 ^ 17:30:37 where T is a type-variable: 17:30:37 T extends Object declared in class Class 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:37 RawAccessRequest raw = new RawAccessRequest(); 17:30:37 ^ 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:37 RawAccessRequest raw = new RawAccessRequest(); 17:30:37 ^ 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 17:30:37 raw.repoUuid = legacy.root().getHash().getValue(); 17:30:37 ^ 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 17:30:37 raw.command = "rm"; 17:30:37 ^ 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 17:30:37 raw.args = Arrays.asList(path); 17:30:37 ^ 17:30:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 17:30:37 final IObject link = linkClass.newInstance(); 17:30:37 ^ 17:30:37 where T is a type-variable: 17:30:37 T extends Object declared in class Class 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 17:30:38 originalLink.setChild(annotationClass.newInstance()); 17:30:38 ^ 17:30:38 where T is a type-variable: 17:30:38 T extends Object declared in class Class 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 17:30:38 RoiResult r = svc.findByImage(id, new RoiOptions()); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:38 final RawAccessRequest request = new RawAccessRequest(); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:38 final RawAccessRequest request = new RawAccessRequest(); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 17:30:38 request.repoUuid = repo.root().getHash().getValue(); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 17:30:38 request.command = "exists"; 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 17:30:38 request.args = Collections.singletonList(dirPath); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:38 final RawAccessRequest request = new RawAccessRequest(); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:30:38 final RawAccessRequest request = new RawAccessRequest(); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 17:30:38 request.repoUuid = repo.root().getHash().getValue(); 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 17:30:38 request.command = "exists"; 17:30:38 ^ 17:30:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 17:30:38 request.args = Collections.singletonList(dirName); 17:30:38 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 17:30:39 final ImportJob importJob = new ImportJobI(); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 17:30:39 final ImportJob importJob = new ImportJobI(); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 17:30:39 importJob.setImageName(omero.rtypes.rstring(name)); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 17:30:39 importJob.setImageDescription(omero.rtypes.rstring(desc)); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 17:30:39 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 17:30:39 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 17:30:39 final String savedName = sent.getImageName().getValue().toString(); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 17:30:39 final String savedDesc = sent.getImageDescription().getValue().toString(); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 17:30:39 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 17:30:39 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 17:30:39 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 17:30:39 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 RoiResult r = svc.findByImage(image.getId().getValue(), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 17:30:39 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 17:30:39 table = svc.getTable(f.getId().getValue()); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 RoiResult r = svc.findByImage(image.getId().getValue(), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 17:30:39 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 17:30:39 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 17:30:39 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 17:30:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 17:30:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 17:30:39 svc.getShapeStatsRestricted( 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 17:30:39 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 17:30:39 ^ 17:30:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:30:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 17:30:39 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:30:40 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:30:40 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:30:40 request.typesToIgnore = Collections.singletonList("Annotation"); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:30:40 request.typesToIgnore = Collections.singletonList("Annotation"); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:30:40 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:30:40 p2.setRelatedTo(p1); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:30:40 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:30:40 pixels1.setRelatedTo(pixels2); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:30:40 Pixels pixels = pixels1.getRelatedTo(); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:30:40 Assert.assertNull(pixels1.getRelatedTo()); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:30:40 pixels1.setRelatedTo(pixels2); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:30:40 Pixels pixels = pixels1.getRelatedTo(); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:30:40 Assert.assertNull(pixels1.getRelatedTo()); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:40 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:40 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:40 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:30:40 ^ 17:30:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:30:40 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:30:40 ^ 17:30:40 Note: Some input files use unchecked or unsafe operations. 17:30:40 Note: Recompile with -Xlint:unchecked for details. 17:30:40 88 warnings 17:30:40 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1715156585.tmp 17:30:40 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 17:30:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:30:40 :: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-500-01e94f4734-ice36 :: integration :: Tue Aug 27 17:30:29 UTC 2024 17:30:40 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 17:30:40 :: publishing :: omero#OmeroJava-test 17:30:40 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-500-01e94f4734-ice36.jar 17:30:40 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-500-01e94f4734-ice36.xml 17:30:40 17:30:40 build-eclipse: 17:30:40 No sub-builds to iterate on 17:30:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:30:40 17:30:40 retrieve: 17:30:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:30:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:30:43 17:30:43 prepare: 17:30:43 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 17:30:44 17:30:44 release-clients: 17:30:44 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-500-01e94f4734-ice36.zip 17:30:50 17:30:50 release-zip: 17:30:50 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-500-01e94f4734-ice36.zip 17:31:03 17:31:03 BUILD SUCCESSFUL 17:31:03 Total time: 1 minute 19 seconds 17:31:03 ++ '[' -d .git ']' 17:31:03 ++ python3 ./build.py release-src 17:31:03 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 17:31:03 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 17:31:03 17:31:03 release-src-git: 17:31:03 Releasing openmicroscopy-5.6.3-500-01e94f4734-ice36 17:31:05 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-500-01e94f4734-ice36.zip 17:31:05 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-500-01e94f4734-ice36-base.zip 17:31:06 17:31:06 BUILD SUCCESSFUL 17:31:06 Total time: 3 seconds 17:31:06 ++ echo BUILD_NUMBER=158 17:31:06 ++ echo OMERO_BRANCH=merge_ci 17:31:06 ++ git_info 17:31:06 +++ git rev-parse HEAD 17:31:06 ++ HEAD=01e94f4734770af20dd1dc6afbeebffdc97f8d71 17:31:06 ++ git log --max-count=1 01e94f4734770af20dd1dc6afbeebffdc97f8d71 17:31:06 ++ env 17:31:06 ++ sort 17:31:06 Archiving artifacts 17:31:35 Finished: SUCCESS