14:42:46 Started by upstream project "Trigger" build number 207 14:42:46 originally caused by: 14:42:46 Started by user devspace 14:42:46 Running as SYSTEM 14:42:46 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 14:42:46 The recommended git tool is: NONE 14:42:46 No credentials specified 14:42:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 14:42:46 Fetching changes from the remote Git repository 14:42:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 14:42:46 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 14:42:46 > git --version # timeout=10 14:42:46 > git --version # 'git version 2.39.3' 14:42:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 14:42:48 > git rev-parse origin/merge_ci^{commit} # timeout=10 14:42:48 Checking out Revision ed618683bdae4e671f61ef76419647cf8625cda4 (origin/merge_ci) 14:42:48 > git config core.sparsecheckout # timeout=10 14:42:48 > git checkout -f ed618683bdae4e671f61ef76419647cf8625cda4 # timeout=10 14:42:48 Commit message: "Add version.properties to etc/omero.properties" 14:42:48 > git rev-list --no-walk fd852ee75da2def9e9392c6736957f5a53488ed2 # timeout=10 14:42:48 Cleaning workspace 14:42:48 > git rev-parse --verify HEAD # timeout=10 14:42:48 Resetting working tree 14:42:48 > git reset --hard # timeout=10 14:42:48 > git clean -fdx # timeout=10 14:42:48 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 170 14:42:48 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7991568925102121742.sh 14:42:48 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 14:42:48 + cd src 14:42:48 + export OMERO_BRANCH=merge_ci 14:42:48 + OMERO_BRANCH=merge_ci 14:42:48 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 14:42:48 + source /home/omero/settings.env 14:42:48 ++ OMERO_DB_HOST=pg 14:42:48 ++ OMERO_DB_USER=postgres 14:42:48 ++ OMERO_DB_PASS= 14:42:48 ++ OMERO_ROOT_PASS=omero 14:42:48 ++ OMERO_DATA_DIR=/OMERO 14:42:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 14:42:48 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 14:42:51 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 14:42:52 Collecting zeroc-ice==3.6.5 14:42:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 14:42:56 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 14:42:56 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 14:42:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 14:42:56 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (74.1.2) 14:42:57 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4) 14:42:57 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 14:42:57 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 14:42:57 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 14:42:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 14:42:57 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 14:42:57 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 14:42:57 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 14:42:57 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 14:42:57 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 14:42:57 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 14:42:57 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 14:42:57 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 14:42:57 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 14:42:57 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 14:42:57 + source docs/hudson/OMERO.sh 14:42:57 ++ set -e 14:42:57 ++ set -u 14:42:57 ++ set -x 14:42:57 ++ source docs/hudson/functions.sh 14:42:57 ++ echo Building merge_ci 14:42:57 Building merge_ci 14:42:57 ++ python3 ./build.py build-dev release-all 14:42:57 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 14:42:58 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 14:42:59 14:42:59 check-ivy: 14:42:59 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 14:42:59 Created dir: /home/omero/workspace/OMERO-build/src/target 14:43:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:43:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:01 14:43:01 build-scons: 14:43:01 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 14:43:02 No sub-builds to iterate on 14:43:02 Entering /home/omero/workspace/OMERO-build/src/components/tools... 14:43:02 14:43:02 buildlist: 14:43:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:43:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:02 14:43:02 clean: 14:43:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:43:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:43:03 14:43:03 python-clean: 14:43:03 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:43:03 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-ed618683bd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:43:03 warnings.warn( 14:43:03 running clean 14:43:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 14:43:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:43:03 14:43:03 python-clean: 14:43:03 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:43:03 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-ed618683bd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:43:03 warnings.warn( 14:43:03 running clean 14:43:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 14:43:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:43:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:43:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:43:03 14:43:03 python-clean: 14:43:03 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:43:03 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-ed618683bd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:43:03 warnings.warn( 14:43:03 running clean 14:43:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 14:43:03 Deleting directory /home/omero/workspace/OMERO-build/src/target 14:43:04 14:43:04 build-scons: 14:43:04 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 14:43:04 14:43:04 build: 14:43:04 No sub-builds to iterate on 14:43:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:43:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:43:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:43:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:43:04 14:43:04 tools-init: 14:43:04 no-op 14:43:04 14:43:04 retrieve: 14:43:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:43:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:05 WARNING: An illegal reflective access operation has occurred 14:43:05 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 14:43:05 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 14:43:05 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 14:43:05 WARNING: All illegal access operations will be denied in a future release 14:43:30 14:43:30 prepare: 14:43:30 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 14:43:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 14:43:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 14:43:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:43:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:43:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 14:43:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 14:43:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 14:43:30 14:43:30 pre-compile: 14:43:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:43:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:43:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:43:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:43:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 14:43:30 14:43:30 compile: 14:43:30 no-op 14:43:30 14:43:30 package: 14:43:30 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 14:43:31 14:43:31 install: 14:43:31 :: delivering :: omero#omero_client;working@8b1804e913d2 :: 5.6.3-504-ed618683bd-ice36 :: integration :: Wed Sep 11 14:43:04 UTC 2024 14:43:31 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 14:43:31 :: publishing :: omero#omero_client 14:43:31 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-504-ed618683bd-ice36/omero_client-5.6.3-504-ed618683bd-ice36.jar 14:43:31 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-504-ed618683bd-ice36/omero_client-5.6.3-504-ed618683bd-ice36.xml 14:43:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:43:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:43:31 14:43:31 retrieve: 14:43:31 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:43:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:31 Entering /home/omero/workspace/OMERO-build/src/components/tools... 14:43:31 14:43:31 dist: 14:43:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 14:43:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 14:43:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 14:43:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 14:43:31 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 14:43:32 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 14:43:32 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 14:43:32 Entering /home/omero/workspace/OMERO-build/src/components/tests... 14:43:32 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 14:43:32 14:43:32 copy-licenses: 14:43:32 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 14:43:32 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 14:43:32 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 14:43:32 14:43:32 copy-history: 14:43:32 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 14:43:32 14:43:32 copy-etc: 14:43:32 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 14:43:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 14:43:33 14:43:33 copy-sql: 14:43:33 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 14:43:45 14:43:45 copy-server: 14:43:45 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 14:43:45 14:43:45 copy-client: 14:43:45 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 14:43:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 14:43:46 14:43:46 update-version: 14:43:46 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 14:43:46 14:43:46 create-workdirs: 14:43:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 14:43:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 14:43:46 14:43:46 copy-luts: 14:43:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 14:43:46 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 14:43:47 14:43:47 test-compile: 14:43:47 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 14:43:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:43:48 14:43:48 testng-init: 14:43:48 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:43:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:51 14:43:51,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 14:43:51 14:43:51,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - No custom configurators were discovered as a service. 14:43:51 14:43:51,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 14:43:51 14:43:51,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 14:43:51 14:43:51,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 14:43:51 14:43:51,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 14:43:51 14:43:51,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 14:43:51 14:43:51,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 14:43:51 14:43:51,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 14:43:51 14:43:51,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 14:43:51 14:43:51,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 14:43:51 14:43:51,468 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2bc41bcb - Resource [logback.xml] occurs multiple times on the classpath. 14:43:51 14:43:51,468 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2bc41bcb - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 14:43:51 14:43:51,468 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2bc41bcb - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 14:43:51 14:43:51,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 14:43:51 14:43:51,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 14:43:51 14:43:51,718 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 14:43:51 14:43:51,720 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@354aaf03 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 14:43:51 14:43:51,720 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@354aaf03 - Please move "immediateFlush" property into the enclosing appender. 14:43:51 14:43:51,794 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@354aaf03 - Setting the "immediateFlush" property of the enclosing appender to true 14:43:51 14:43:51,795 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 14:43:51 14:43:51,795 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 14:43:51 14:43:51,795 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 14:43:51 14:43:51,795 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 14:43:51 14:43:51,795 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 14:43:51 14:43:51,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 14:43:51 14:43:51,797 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63e31b89 - End of configuration. 14:43:51 14:43:51,799 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@42141c59 - Registering current configuration as safe fallback point 14:43:51 14:43:51,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b7945e1 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 333 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 14:43:51 14:43:51 lifecycle.test-compile: 14:43:51 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 14:43:51 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 14:43:52 warning: [options] bootstrap class path not set in conjunction with -source 8 14:43:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:55 import omero.grid.RawAccessRequest; 14:43:55 ^ 14:43:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:55 import omero.grid.RawAccessRequest; 14:43:55 ^ 14:43:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:55 import omero.grid.RawAccessRequest; 14:43:55 ^ 14:43:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 14:43:55 import omero.model.ImportJob; 14:43:55 ^ 14:43:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 14:43:55 import omero.model.ImportJobI; 14:43:55 ^ 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 14:43:56 IObject link = (IObject) linkClass.newInstance(); 14:43:56 ^ 14:43:56 where T is a type-variable: 14:43:56 T extends Object declared in class Class 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 14:43:56 T copy = (T) obj.getClass().newInstance(); 14:43:56 ^ 14:43:56 where T is a type-variable: 14:43:56 T extends Object declared in class Class 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:56 RawAccessRequest raw = new RawAccessRequest(); 14:43:56 ^ 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:56 RawAccessRequest raw = new RawAccessRequest(); 14:43:56 ^ 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 14:43:56 raw.repoUuid = legacy.root().getHash().getValue(); 14:43:56 ^ 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 14:43:56 raw.command = "rm"; 14:43:56 ^ 14:43:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 14:43:56 raw.args = Arrays.asList(path); 14:43:56 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 14:43:57 final IObject link = linkClass.newInstance(); 14:43:57 ^ 14:43:57 where T is a type-variable: 14:43:57 T extends Object declared in class Class 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 14:43:57 originalLink.setChild(annotationClass.newInstance()); 14:43:57 ^ 14:43:57 where T is a type-variable: 14:43:57 T extends Object declared in class Class 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 14:43:57 RoiResult r = svc.findByImage(id, new RoiOptions()); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:57 final RawAccessRequest request = new RawAccessRequest(); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:57 final RawAccessRequest request = new RawAccessRequest(); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 14:43:57 request.repoUuid = repo.root().getHash().getValue(); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 14:43:57 request.command = "exists"; 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 14:43:57 request.args = Collections.singletonList(dirPath); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:57 final RawAccessRequest request = new RawAccessRequest(); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 14:43:57 final RawAccessRequest request = new RawAccessRequest(); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 14:43:57 request.repoUuid = repo.root().getHash().getValue(); 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 14:43:57 request.command = "exists"; 14:43:57 ^ 14:43:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 14:43:57 request.args = Collections.singletonList(dirName); 14:43:57 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 14:43:58 final ImportJob importJob = new ImportJobI(); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 14:43:58 final ImportJob importJob = new ImportJobI(); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 14:43:58 importJob.setImageName(omero.rtypes.rstring(name)); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 14:43:58 importJob.setImageDescription(omero.rtypes.rstring(desc)); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 14:43:58 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 14:43:58 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 14:43:58 final String savedName = sent.getImageName().getValue().toString(); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 14:43:58 final String savedDesc = sent.getImageDescription().getValue().toString(); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 14:43:58 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 14:43:58 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 14:43:58 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 14:43:58 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 RoiResult r = svc.findByImage(image.getId().getValue(), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 14:43:58 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 14:43:58 table = svc.getTable(f.getId().getValue()); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 RoiResult r = svc.findByImage(image.getId().getValue(), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 14:43:58 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 14:43:58 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 14:43:58 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 14:43:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 14:43:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 14:43:58 svc.getShapeStatsRestricted( 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 14:43:58 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 14:43:58 ^ 14:43:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:43:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 14:43:58 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:43:59 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:43:59 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:43:59 request.typesToIgnore = Collections.singletonList("Annotation"); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 14:43:59 request.typesToIgnore = Collections.singletonList("Annotation"); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:43:59 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:43:59 p2.setRelatedTo(p1); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:43:59 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:43:59 pixels1.setRelatedTo(pixels2); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:43:59 Pixels pixels = pixels1.getRelatedTo(); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:43:59 Assert.assertNull(pixels1.getRelatedTo()); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 14:43:59 pixels1.setRelatedTo(pixels2); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:43:59 Pixels pixels = pixels1.getRelatedTo(); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 14:43:59 Assert.assertNull(pixels1.getRelatedTo()); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:59 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 14:43:59 ^ 14:43:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 14:43:59 l = svc.getRoiMeasurements(image.getId().getValue(), options); 14:43:59 ^ 14:43:59 Note: Some input files use unchecked or unsafe operations. 14:43:59 Note: Recompile with -Xlint:unchecked for details. 14:43:59 88 warnings 14:43:59 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1967393701.tmp 14:43:59 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 14:43:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:43:59 :: delivering :: omero#OmeroJava-test;working@8b1804e913d2 :: 5.6.3-504-ed618683bd-ice36 :: integration :: Wed Sep 11 14:43:47 UTC 2024 14:43:59 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 14:43:59 :: publishing :: omero#OmeroJava-test 14:43:59 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-504-ed618683bd-ice36.jar 14:43:59 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-504-ed618683bd-ice36.xml 14:43:59 14:43:59 build-eclipse: 14:43:59 No sub-builds to iterate on 14:43:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:43:59 14:43:59 retrieve: 14:43:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:43:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:44:02 14:44:02 prepare: 14:44:02 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 14:44:03 14:44:03 release-clients: 14:44:03 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-504-ed618683bd-ice36.zip 14:44:09 14:44:09 release-zip: 14:44:09 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-504-ed618683bd-ice36.zip 14:44:21 14:44:21 BUILD SUCCESSFUL 14:44:21 Total time: 1 minute 23 seconds 14:44:22 ++ '[' -d .git ']' 14:44:22 ++ python3 ./build.py release-src 14:44:22 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 14:44:22 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 14:44:22 14:44:22 release-src-git: 14:44:22 Releasing openmicroscopy-5.6.3-504-ed618683bd-ice36 14:44:24 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-504-ed618683bd-ice36.zip 14:44:24 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-504-ed618683bd-ice36-base.zip 14:44:26 14:44:26 BUILD SUCCESSFUL 14:44:26 Total time: 4 seconds 14:44:26 ++ echo BUILD_NUMBER=172 14:44:26 ++ echo OMERO_BRANCH=merge_ci 14:44:26 ++ git_info 14:44:26 +++ git rev-parse HEAD 14:44:26 ++ HEAD=ed618683bdae4e671f61ef76419647cf8625cda4 14:44:26 ++ git log --max-count=1 ed618683bdae4e671f61ef76419647cf8625cda4 14:44:26 ++ env 14:44:26 ++ sort 14:44:26 Archiving artifacts 14:44:54 Finished: SUCCESS