01:03:22 Started by upstream project "Trigger" build number 221 01:03:22 originally caused by: 01:03:22 Started by timer 01:03:22 Running as SYSTEM 01:03:22 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:03:22 The recommended git tool is: NONE 01:03:22 No credentials specified 01:03:22 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:03:22 Fetching changes from the remote Git repository 01:03:22 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:03:22 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:03:22 > git --version # timeout=10 01:03:22 > git --version # 'git version 2.43.5' 01:03:22 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:03:24 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:03:24 Checking out Revision 171f76ee6905fd5149aa5b3f0ccece1d2e2b2db6 (origin/merge_ci) 01:03:24 > git config core.sparsecheckout # timeout=10 01:03:24 > git checkout -f 171f76ee6905fd5149aa5b3f0ccece1d2e2b2db6 # timeout=10 01:03:24 Commit message: "Add version.properties to etc/omero.properties" 01:03:24 > git rev-list --no-walk d55898cf80651e7cfd084982bbee07fef7d867fb # timeout=10 01:03:24 Cleaning workspace 01:03:24 > git rev-parse --verify HEAD # timeout=10 01:03:24 Resetting working tree 01:03:24 > git reset --hard # timeout=10 01:03:24 > git clean -fdx # timeout=10 01:03:24 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 181 01:03:24 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5927526230341369051.sh 01:03:24 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 01:03:24 + cd src 01:03:24 + export OMERO_BRANCH=merge_ci 01:03:24 + OMERO_BRANCH=merge_ci 01:03:24 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:03:24 + source /home/omero/settings.env 01:03:24 ++ OMERO_DB_HOST=pg 01:03:24 ++ OMERO_DB_USER=postgres 01:03:24 ++ OMERO_DB_PASS= 01:03:24 ++ OMERO_ROOT_PASS=omero 01:03:24 ++ OMERO_DATA_DIR=/OMERO 01:03:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:03:24 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:03:27 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 01:03:28 Collecting zeroc-ice==3.6.5 01:03:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 01:03:31 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 01:03:31 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:03:31 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 01:03:31 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0) 01:03:32 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5) 01:03:32 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 01:03:32 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 01:03:32 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 01:03:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 01:03:32 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 01:03:32 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 01:03:32 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 01:03:32 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 01:03:32 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 01:03:32 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 01:03:32 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 01:03:32 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 01:03:32 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 01:03:32 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:03:32 + source docs/hudson/OMERO.sh 01:03:32 ++ set -e 01:03:32 ++ set -u 01:03:32 ++ set -x 01:03:32 ++ source docs/hudson/functions.sh 01:03:32 ++ echo Building merge_ci 01:03:32 Building merge_ci 01:03:32 ++ python3 ./build.py build-dev release-all 01:03:32 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:03:33 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:03:34 01:03:34 check-ivy: 01:03:34 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:03:34 Created dir: /home/omero/workspace/OMERO-build/src/target 01:03:34 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:03:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:03:35 01:03:35 build-scons: 01:03:35 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:03:35 No sub-builds to iterate on 01:03:35 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:03:36 01:03:36 buildlist: 01:03:36 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:03:36 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:03:36 01:03:36 clean: 01:03:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:03:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:03:36 01:03:36 python-clean: 01:03:36 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:03:36 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-510-171f76ee69-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:03:36 warnings.warn( 01:03:36 running clean 01:03:36 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:03:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:03:36 01:03:36 python-clean: 01:03:36 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:03:36 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-510-171f76ee69-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:03:36 warnings.warn( 01:03:36 running clean 01:03:36 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:03:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:03:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:03:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:03:37 01:03:37 python-clean: 01:03:37 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:03:37 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-510-171f76ee69-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:03:37 warnings.warn( 01:03:37 running clean 01:03:37 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:03:37 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:03:37 01:03:37 build-scons: 01:03:37 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:03:37 01:03:37 build: 01:03:37 No sub-builds to iterate on 01:03:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:03:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:03:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:03:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:03:37 01:03:37 tools-init: 01:03:37 no-op 01:03:37 01:03:37 retrieve: 01:03:37 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:03:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:03:38 WARNING: An illegal reflective access operation has occurred 01:03:38 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 01:03:38 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 01:03:38 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 01:03:38 WARNING: All illegal access operations will be denied in a future release 01:03:51 01:03:51 prepare: 01:03:51 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:03:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:03:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:03:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:03:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:03:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:03:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:03:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:03:52 01:03:52 pre-compile: 01:03:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:03:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:03:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:03:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:03:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:03:52 01:03:52 compile: 01:03:52 no-op 01:03:52 01:03:52 package: 01:03:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:03:52 01:03:52 install: 01:03:52 :: delivering :: omero#omero_client;working@2ccf0a67313e :: 5.6.3-510-171f76ee69-ice36 :: integration :: Mon Sep 23 01:03:37 UTC 2024 01:03:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:03:52 :: publishing :: omero#omero_client 01:03:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-510-171f76ee69-ice36/omero_client-5.6.3-510-171f76ee69-ice36.jar 01:03:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-510-171f76ee69-ice36/omero_client-5.6.3-510-171f76ee69-ice36.xml 01:03:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:03:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:03:53 01:03:53 retrieve: 01:03:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:03:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:03:53 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:03:53 01:03:53 dist: 01:03:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:03:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:03:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:03:53 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:03:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:03:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 01:03:53 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:03:53 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:03:53 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:03:53 01:03:53 copy-licenses: 01:03:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:03:53 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:03:53 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:03:54 01:03:54 copy-history: 01:03:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:03:54 01:03:54 copy-etc: 01:03:54 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:03:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:03:54 01:03:54 copy-sql: 01:03:54 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:04:03 01:04:03 copy-server: 01:04:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 01:04:03 01:04:03 copy-client: 01:04:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:04:06 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 01:04:07 01:04:07 update-version: 01:04:07 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:04:07 01:04:07 create-workdirs: 01:04:07 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:04:07 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:04:07 01:04:07 copy-luts: 01:04:07 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:04:07 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:04:07 01:04:07 test-compile: 01:04:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:04:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:04:07 01:04:07 testng-init: 01:04:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:04:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:04:11 01:04:11,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 01:04:11 01:04:11,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - No custom configurators were discovered as a service. 01:04:11 01:04:11,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:04:11 01:04:11,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:04:11 01:04:11,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:04:11 01:04:11,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:04:11 01:04:11,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:04:11 01:04:11,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:04:11 01:04:11,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:04:11 01:04:11,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:04:11 01:04:11,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:04:11 01:04:11,156 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@42141c59 - Resource [logback.xml] occurs multiple times on the classpath. 01:04:11 01:04:11,156 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@42141c59 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:04:11 01:04:11,156 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@42141c59 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:04:11 01:04:11,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:04:11 01:04:11,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:04:11 01:04:11,389 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:04:11 01:04:11,391 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@49854d93 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:04:11 01:04:11,391 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@49854d93 - Please move "immediateFlush" property into the enclosing appender. 01:04:11 01:04:11,455 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@49854d93 - Setting the "immediateFlush" property of the enclosing appender to true 01:04:11 01:04:11,456 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:04:11 01:04:11,456 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:04:11 01:04:11,456 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:04:11 01:04:11,456 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:04:11 01:04:11,456 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:04:11 01:04:11,456 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:04:11 01:04:11,458 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29d7d117 - End of configuration. 01:04:11 01:04:11,460 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5213a8f7 - Registering current configuration as safe fallback point 01:04:11 01:04:11,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@63e31b89 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 305 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:04:11 01:04:11 lifecycle.test-compile: 01:04:11 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:04:11 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:04:11 warning: [options] bootstrap class path not set in conjunction with -source 8 01:04:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:14 import omero.grid.RawAccessRequest; 01:04:14 ^ 01:04:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:14 import omero.grid.RawAccessRequest; 01:04:14 ^ 01:04:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:14 import omero.grid.RawAccessRequest; 01:04:14 ^ 01:04:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:04:14 import omero.model.ImportJob; 01:04:14 ^ 01:04:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:04:14 import omero.model.ImportJobI; 01:04:14 ^ 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:04:15 IObject link = (IObject) linkClass.newInstance(); 01:04:15 ^ 01:04:15 where T is a type-variable: 01:04:15 T extends Object declared in class Class 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:04:15 T copy = (T) obj.getClass().newInstance(); 01:04:15 ^ 01:04:15 where T is a type-variable: 01:04:15 T extends Object declared in class Class 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:15 RawAccessRequest raw = new RawAccessRequest(); 01:04:15 ^ 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:15 RawAccessRequest raw = new RawAccessRequest(); 01:04:15 ^ 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:04:15 raw.repoUuid = legacy.root().getHash().getValue(); 01:04:15 ^ 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:04:15 raw.command = "rm"; 01:04:15 ^ 01:04:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:04:15 raw.args = Arrays.asList(path); 01:04:15 ^ 01:04:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:04:16 final IObject link = linkClass.newInstance(); 01:04:16 ^ 01:04:16 where T is a type-variable: 01:04:16 T extends Object declared in class Class 01:04:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:04:16 originalLink.setChild(annotationClass.newInstance()); 01:04:16 ^ 01:04:16 where T is a type-variable: 01:04:16 T extends Object declared in class Class 01:04:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:04:16 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:04:16 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:17 final RawAccessRequest request = new RawAccessRequest(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:17 final RawAccessRequest request = new RawAccessRequest(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:04:17 request.repoUuid = repo.root().getHash().getValue(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:04:17 request.command = "exists"; 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:04:17 request.args = Collections.singletonList(dirPath); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:17 final RawAccessRequest request = new RawAccessRequest(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:04:17 final RawAccessRequest request = new RawAccessRequest(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:04:17 request.repoUuid = repo.root().getHash().getValue(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:04:17 request.command = "exists"; 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:04:17 request.args = Collections.singletonList(dirName); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:04:17 final ImportJob importJob = new ImportJobI(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:04:17 final ImportJob importJob = new ImportJobI(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:04:17 importJob.setImageName(omero.rtypes.rstring(name)); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:04:17 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:04:17 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:04:17 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:04:17 final String savedName = sent.getImageName().getValue().toString(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:04:17 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:04:17 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:04:17 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:04:17 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:04:17 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 RoiResult r = svc.findByImage(image.getId().getValue(), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:04:17 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:04:17 table = svc.getTable(f.getId().getValue()); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 RoiResult r = svc.findByImage(image.getId().getValue(), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:04:17 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:04:17 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:04:17 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 01:04:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:04:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:04:17 svc.getShapeStatsRestricted( 01:04:17 ^ 01:04:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:04:17 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:04:17 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:04:18 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:04:18 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:04:18 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:04:18 request.typesToIgnore = Collections.singletonList("Annotation"); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:04:18 request.typesToIgnore = Collections.singletonList("Annotation"); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:04:18 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:04:18 p2.setRelatedTo(p1); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:04:18 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:04:18 pixels1.setRelatedTo(pixels2); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:04:18 Pixels pixels = pixels1.getRelatedTo(); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:04:18 Assert.assertNull(pixels1.getRelatedTo()); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:04:18 pixels1.setRelatedTo(pixels2); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:04:18 Pixels pixels = pixels1.getRelatedTo(); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:04:18 Assert.assertNull(pixels1.getRelatedTo()); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:18 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:04:18 ^ 01:04:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:04:18 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:04:18 ^ 01:04:18 Note: Some input files use unchecked or unsafe operations. 01:04:18 Note: Recompile with -Xlint:unchecked for details. 01:04:18 88 warnings 01:04:18 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1410089473.tmp 01:04:18 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:04:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:04:18 :: delivering :: omero#OmeroJava-test;working@2ccf0a67313e :: 5.6.3-510-171f76ee69-ice36 :: integration :: Mon Sep 23 01:04:07 UTC 2024 01:04:18 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:04:18 :: publishing :: omero#OmeroJava-test 01:04:18 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-510-171f76ee69-ice36.jar 01:04:18 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-510-171f76ee69-ice36.xml 01:04:18 01:04:18 build-eclipse: 01:04:18 No sub-builds to iterate on 01:04:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:04:19 01:04:19 retrieve: 01:04:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:04:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:04:21 01:04:21 prepare: 01:04:21 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:04:22 01:04:22 release-clients: 01:04:22 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-510-171f76ee69-ice36.zip 01:04:28 01:04:28 release-zip: 01:04:28 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-510-171f76ee69-ice36.zip 01:04:40 01:04:40 BUILD SUCCESSFUL 01:04:40 Total time: 1 minute 7 seconds 01:04:40 ++ '[' -d .git ']' 01:04:40 ++ python3 ./build.py release-src 01:04:40 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:04:40 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:04:41 01:04:41 release-src-git: 01:04:41 Releasing openmicroscopy-5.6.3-510-171f76ee69-ice36 01:04:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-510-171f76ee69-ice36.zip 01:04:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-510-171f76ee69-ice36-base.zip 01:04:44 01:04:44 BUILD SUCCESSFUL 01:04:44 Total time: 3 seconds 01:04:44 ++ echo BUILD_NUMBER=184 01:04:44 ++ echo OMERO_BRANCH=merge_ci 01:04:44 ++ git_info 01:04:44 +++ git rev-parse HEAD 01:04:44 ++ HEAD=171f76ee6905fd5149aa5b3f0ccece1d2e2b2db6 01:04:44 ++ git log --max-count=1 171f76ee6905fd5149aa5b3f0ccece1d2e2b2db6 01:04:44 ++ env 01:04:44 ++ sort 01:04:44 Archiving artifacts 01:05:11 Finished: SUCCESS