00:39:46 Started by upstream project "Trigger" build number 266 00:39:46 originally caused by: 00:39:46 Started by timer 00:39:46 Running as SYSTEM 00:39:46 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:39:46 The recommended git tool is: NONE 00:39:46 No credentials specified 00:39:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:39:46 Fetching changes from the remote Git repository 00:39:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:39:46 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:39:46 > git --version # timeout=10 00:39:46 > git --version # 'git version 2.43.5' 00:39:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:39:53 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:39:53 Checking out Revision 8dbc8aac9831e7a5149af094f8eb2d41c661aaec (origin/merge_ci) 00:39:53 > git config core.sparsecheckout # timeout=10 00:39:53 > git checkout -f 8dbc8aac9831e7a5149af094f8eb2d41c661aaec # timeout=10 00:39:54 Commit message: "Add version.properties to etc/omero.properties" 00:39:54 > git rev-list --no-walk 1d544f5cd0515a0628f729a7dd23b2cc0e20b415 # timeout=10 00:39:54 Cleaning workspace 00:39:54 > git rev-parse --verify HEAD # timeout=10 00:39:54 Resetting working tree 00:39:54 > git reset --hard # timeout=10 00:39:55 > git clean -fdx # timeout=10 00:39:55 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 217 00:39:55 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7451461752058471529.sh 00:39:55 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 00:39:55 + cd src 00:39:55 + export OMERO_BRANCH=merge_ci 00:39:55 + OMERO_BRANCH=merge_ci 00:39:55 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:39:55 + source /home/omero/settings.env 00:39:55 ++ OMERO_DB_HOST=pg 00:39:55 ++ OMERO_DB_USER=postgres 00:39:55 ++ OMERO_DB_PASS= 00:39:55 ++ OMERO_ROOT_PASS=omero 00:39:55 ++ OMERO_DATA_DIR=/OMERO 00:39:55 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:39:55 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:40:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:40:02 Collecting zeroc-ice==3.6.5 00:40:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:40:04 WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. 00:40:04 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 00:40:04 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 00:40:05 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.2.0) 00:40:05 Collecting setuptools 00:40:05 Using cached setuptools-75.3.0-py3-none-any.whl (1.3 MB) 00:40:05 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5) 00:40:06 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 00:40:06 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 00:40:06 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 00:40:06 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 00:40:06 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 00:40:06 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:40:06 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:40:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:40:06 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 00:40:06 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 00:40:06 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 00:40:06 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 00:40:06 Installing collected packages: setuptools 00:40:06 Attempting uninstall: setuptools 00:40:06 Found existing installation: setuptools 75.2.0 00:40:06 Uninstalling setuptools-75.2.0: 00:40:06 Successfully uninstalled setuptools-75.2.0 00:40:07 Successfully installed setuptools-75.3.0 00:40:07 WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. 00:40:07 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 00:40:08 + source docs/hudson/OMERO.sh 00:40:08 ++ set -e 00:40:08 ++ set -u 00:40:08 ++ set -x 00:40:08 ++ source docs/hudson/functions.sh 00:40:08 ++ echo Building merge_ci 00:40:08 Building merge_ci 00:40:08 ++ python3 ./build.py build-dev release-all 00:40:08 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 00:40:08 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:40:08 00:40:08 check-ivy: 00:40:08 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:40:08 Created dir: /home/omero/workspace/OMERO-build/src/target 00:40:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:10 00:40:10 build-scons: 00:40:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:40:10 No sub-builds to iterate on 00:40:10 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:40:10 00:40:10 buildlist: 00:40:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:10 00:40:10 clean: 00:40:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:11 00:40:11 python-clean: 00:40:11 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:11 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-515-8dbc8aac98-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:11 warnings.warn( 00:40:11 running clean 00:40:11 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:40:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:11 00:40:11 python-clean: 00:40:11 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:11 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-515-8dbc8aac98-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:11 warnings.warn( 00:40:11 running clean 00:40:11 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:40:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:12 00:40:12 python-clean: 00:40:12 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:12 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-515-8dbc8aac98-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:12 warnings.warn( 00:40:12 running clean 00:40:12 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:40:12 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:40:12 00:40:12 build-scons: 00:40:12 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:40:12 00:40:12 build: 00:40:12 No sub-builds to iterate on 00:40:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:12 00:40:12 tools-init: 00:40:12 no-op 00:40:12 00:40:12 retrieve: 00:40:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:13 WARNING: An illegal reflective access operation has occurred 00:40:13 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:40:13 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:40:13 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:40:13 WARNING: All illegal access operations will be denied in a future release 00:40:43 00:40:43 prepare: 00:40:43 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:43 00:40:43 pre-compile: 00:40:43 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:44 00:40:44 compile: 00:40:44 no-op 00:40:44 00:40:44 package: 00:40:44 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:40:44 00:40:44 install: 00:40:44 :: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-515-8dbc8aac98-ice36 :: integration :: Fri Nov 01 00:40:12 UTC 2024 00:40:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:40:44 :: publishing :: omero#omero_client 00:40:44 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-515-8dbc8aac98-ice36/omero_client-5.6.3-515-8dbc8aac98-ice36.jar 00:40:44 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-515-8dbc8aac98-ice36/omero_client-5.6.3-515-8dbc8aac98-ice36.xml 00:40:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:45 00:40:45 retrieve: 00:40:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:40:45 00:40:45 dist: 00:40:45 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:40:45 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:40:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:40:45 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:40:45 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:40:45 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 00:40:45 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:40:45 00:40:45 copy-licenses: 00:40:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:40:45 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:40:45 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:40:45 00:40:45 copy-history: 00:40:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:40:45 00:40:45 copy-etc: 00:40:45 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:40:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:40:45 00:40:45 copy-sql: 00:40:45 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:40:55 00:40:55 copy-server: 00:40:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 00:40:55 00:40:55 copy-client: 00:40:55 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:40:57 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 00:40:57 00:40:57 update-version: 00:40:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:40:57 00:40:57 create-workdirs: 00:40:57 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:40:57 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:40:57 00:40:57 copy-luts: 00:40:57 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:40:57 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:40:57 00:40:57 test-compile: 00:40:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:40:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:58 00:40:58 testng-init: 00:40:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:02 00:41:02,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 00:41:02 00:41:02,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - No custom configurators were discovered as a service. 00:41:02 00:41:02,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:02 00:41:02,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:02 00:41:02,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:41:02 00:41:02,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:41:02 00:41:02,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:41:02 00:41:02,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:02 00:41:02,048 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:02 00:41:02,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:41:02 00:41:02,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:02 00:41:02,050 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6910e725 - Resource [logback.xml] occurs multiple times on the classpath. 00:41:02 00:41:02,050 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6910e725 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:02 00:41:02,050 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6910e725 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:41:02 00:41:02,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:41:02 00:41:02,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:41:02 00:41:02,302 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:41:02 00:41:02,304 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3453a820 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:41:02 00:41:02,304 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3453a820 - Please move "immediateFlush" property into the enclosing appender. 00:41:02 00:41:02,372 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3453a820 - Setting the "immediateFlush" property of the enclosing appender to true 00:41:02 00:41:02,373 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:41:02 00:41:02,373 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:41:02 00:41:02,373 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:41:02 00:41:02,373 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:41:02 00:41:02,373 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:41:02 00:41:02,373 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:41:02 00:41:02,374 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@133fb509 - End of configuration. 00:41:02 00:41:02,377 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2235fdc7 - Registering current configuration as safe fallback point 00:41:02 00:41:02,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3cb1a148 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 329 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:41:02 00:41:02 lifecycle.test-compile: 00:41:02 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:02 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:02 warning: [options] bootstrap class path not set in conjunction with -source 8 00:41:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:04 import omero.grid.RawAccessRequest; 00:41:04 ^ 00:41:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:04 import omero.grid.RawAccessRequest; 00:41:04 ^ 00:41:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:04 import omero.grid.RawAccessRequest; 00:41:04 ^ 00:41:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:04 import omero.model.ImportJob; 00:41:04 ^ 00:41:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:41:04 import omero.model.ImportJobI; 00:41:04 ^ 00:41:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:41:05 IObject link = (IObject) linkClass.newInstance(); 00:41:05 ^ 00:41:05 where T is a type-variable: 00:41:05 T extends Object declared in class Class 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:41:06 T copy = (T) obj.getClass().newInstance(); 00:41:06 ^ 00:41:06 where T is a type-variable: 00:41:06 T extends Object declared in class Class 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:06 RawAccessRequest raw = new RawAccessRequest(); 00:41:06 ^ 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:06 RawAccessRequest raw = new RawAccessRequest(); 00:41:06 ^ 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:41:06 raw.repoUuid = legacy.root().getHash().getValue(); 00:41:06 ^ 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:41:06 raw.command = "rm"; 00:41:06 ^ 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:41:06 raw.args = Arrays.asList(path); 00:41:06 ^ 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:41:06 final IObject link = linkClass.newInstance(); 00:41:06 ^ 00:41:06 where T is a type-variable: 00:41:06 T extends Object declared in class Class 00:41:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:41:06 originalLink.setChild(annotationClass.newInstance()); 00:41:06 ^ 00:41:06 where T is a type-variable: 00:41:06 T extends Object declared in class Class 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:41:07 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:07 final RawAccessRequest request = new RawAccessRequest(); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:07 final RawAccessRequest request = new RawAccessRequest(); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:41:07 request.repoUuid = repo.root().getHash().getValue(); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:41:07 request.command = "exists"; 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:41:07 request.args = Collections.singletonList(dirPath); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:07 final RawAccessRequest request = new RawAccessRequest(); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:07 final RawAccessRequest request = new RawAccessRequest(); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:41:07 request.repoUuid = repo.root().getHash().getValue(); 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:41:07 request.command = "exists"; 00:41:07 ^ 00:41:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:41:07 request.args = Collections.singletonList(dirName); 00:41:07 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:08 final ImportJob importJob = new ImportJobI(); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:41:08 final ImportJob importJob = new ImportJobI(); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:41:08 importJob.setImageName(omero.rtypes.rstring(name)); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:41:08 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:41:08 final String savedName = sent.getImageName().getValue().toString(); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:41:08 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:41:08 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:41:08 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 RoiResult r = svc.findByImage(image.getId().getValue(), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:41:08 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:41:08 table = svc.getTable(f.getId().getValue()); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 RoiResult r = svc.findByImage(image.getId().getValue(), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:41:08 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:41:08 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:41:08 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:41:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:41:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:41:08 svc.getShapeStatsRestricted( 00:41:08 ^ 00:41:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:41:08 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:41:08 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:09 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:09 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:09 request.typesToIgnore = Collections.singletonList("Annotation"); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:09 request.typesToIgnore = Collections.singletonList("Annotation"); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:09 p2.setRelatedTo(p1); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:09 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:09 pixels1.setRelatedTo(pixels2); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:09 Pixels pixels = pixels1.getRelatedTo(); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:09 Assert.assertNull(pixels1.getRelatedTo()); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:09 pixels1.setRelatedTo(pixels2); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:09 Pixels pixels = pixels1.getRelatedTo(); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:09 Assert.assertNull(pixels1.getRelatedTo()); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:09 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:09 ^ 00:41:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:09 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:09 ^ 00:41:09 Note: Some input files use unchecked or unsafe operations. 00:41:09 Note: Recompile with -Xlint:unchecked for details. 00:41:09 88 warnings 00:41:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_715191830.tmp 00:41:09 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:41:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:09 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-515-8dbc8aac98-ice36 :: integration :: Fri Nov 01 00:40:57 UTC 2024 00:41:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:41:09 :: publishing :: omero#OmeroJava-test 00:41:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-515-8dbc8aac98-ice36.jar 00:41:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-515-8dbc8aac98-ice36.xml 00:41:09 00:41:09 build-eclipse: 00:41:09 No sub-builds to iterate on 00:41:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:41:10 00:41:10 retrieve: 00:41:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:41:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:12 00:41:12 prepare: 00:41:12 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:41:14 00:41:14 release-clients: 00:41:14 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-515-8dbc8aac98-ice36.zip 00:41:20 00:41:20 release-zip: 00:41:20 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-515-8dbc8aac98-ice36.zip 00:41:32 00:41:32 BUILD SUCCESSFUL 00:41:32 Total time: 1 minute 23 seconds 00:41:32 ++ '[' -d .git ']' 00:41:32 ++ python3 ./build.py release-src 00:41:32 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 00:41:32 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:41:32 00:41:32 release-src-git: 00:41:32 Releasing openmicroscopy-5.6.3-515-8dbc8aac98-ice36 00:41:34 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-515-8dbc8aac98-ice36.zip 00:41:34 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-515-8dbc8aac98-ice36-base.zip 00:41:35 00:41:35 BUILD SUCCESSFUL 00:41:35 Total time: 3 seconds 00:41:35 ++ echo BUILD_NUMBER=220 00:41:35 ++ echo OMERO_BRANCH=merge_ci 00:41:35 ++ git_info 00:41:35 +++ git rev-parse HEAD 00:41:35 ++ HEAD=8dbc8aac9831e7a5149af094f8eb2d41c661aaec 00:41:35 ++ git log --max-count=1 8dbc8aac9831e7a5149af094f8eb2d41c661aaec 00:41:35 ++ env 00:41:35 ++ sort 00:41:36 Archiving artifacts 00:42:03 Finished: SUCCESS