10:19:51 Started by user devspace 10:19:51 Running as SYSTEM 10:19:51 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 10:19:51 The recommended git tool is: NONE 10:19:51 No credentials specified 10:19:51 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 10:19:51 Fetching changes from the remote Git repository 10:19:51 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 10:19:51 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 10:19:51 > git --version # timeout=10 10:19:51 > git --version # 'git version 2.52.0' 10:19:51 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 10:19:56 > git rev-parse origin/merge_ci^{commit} # timeout=10 10:19:56 Checking out Revision 1d697f848f941981c7f17d801abb590ac59cb012 (origin/merge_ci) 10:19:56 > git config core.sparsecheckout # timeout=10 10:19:56 > git checkout -f 1d697f848f941981c7f17d801abb590ac59cb012 # timeout=10 10:20:15 Commit message: "Add version.properties to etc/omero.properties" 10:20:15 > git rev-list --no-walk 4868227d9f24037f68979923205657dd0f89ef37 # timeout=10 10:20:15 Cleaning workspace 10:20:15 > git rev-parse --verify HEAD # timeout=10 10:20:15 Resetting working tree 10:20:15 > git reset --hard # timeout=10 10:20:16 > git clean -fdx # timeout=10 10:20:46 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 20 10:20:47 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7733691423351684126.sh 10:20:47 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 10:20:47 + cd src 10:20:47 + export OMERO_BRANCH=merge_ci 10:20:47 + OMERO_BRANCH=merge_ci 10:20:47 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 10:20:47 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 10:21:16 + source /home/omero/settings.env 10:21:16 ++ OMERO_DB_HOST=pg 10:21:16 ++ OMERO_DB_USER=postgres 10:21:16 ++ OMERO_DB_PASS= 10:21:16 ++ OMERO_ROOT_PASS=omero 10:21:16 ++ OMERO_DATA_DIR=/OMERO 10:21:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:21:16 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 10:21:40 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 10:21:41 Collecting zeroc-ice==3.6.5 10:21:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 10:21:44 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.7 MB/s eta 0:00:00 10:21:44 Installing collected packages: zeroc-ice 10:21:48 Successfully installed zeroc-ice-3.6.5 10:21:48 10:21:48 [notice] A new release of pip available: 22.3.1 -> 26.1.2 10:21:48 [notice] To update, run: python3.11 -m pip install --upgrade pip 10:21:48 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 10:21:49 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 10:21:50 Collecting setuptools<66 10:21:50 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 10:21:50 Collecting omero-py 10:21:50 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 10:21:50 Collecting appdirs 10:21:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 10:21:50 Collecting future 10:21:50 Using cached future-1.0.0-py3-none-any.whl (491 kB) 10:21:51 Collecting numpy<3,>=2 10:21:51 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 10:21:52 Collecting Pillow>=10.0.0 10:21:52 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 10:21:52 Collecting PyYAML 10:21:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 10:21:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 10:21:52 Collecting requests 10:21:52 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 10:21:53 Collecting portalocker 10:21:53 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 10:21:53 Collecting charset_normalizer<4,>=2 10:21:53 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 10:21:53 Collecting idna<4,>=2.5 10:21:53 Using cached idna-3.18-py3-none-any.whl (65 kB) 10:21:53 Collecting urllib3<3,>=1.26 10:21:53 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 10:21:53 Collecting certifi>=2023.5.7 10:21:53 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 10:21:54 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 10:21:55 Attempting uninstall: setuptools 10:21:55 Found existing installation: setuptools 65.5.1 10:21:56 Uninstalling setuptools-65.5.1: 10:21:56 Successfully uninstalled setuptools-65.5.1 10:23:00 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 10:23:00 10:23:00 [notice] A new release of pip available: 22.3.1 -> 26.1.2 10:23:00 [notice] To update, run: python3.11 -m pip install --upgrade pip 10:23:00 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 10:23:00 ++ deactivate nondestructive 10:23:00 ++ '[' -n '' ']' 10:23:00 ++ '[' -n '' ']' 10:23:00 ++ hash -r 10:23:00 ++ '[' -n '' ']' 10:23:00 ++ unset VIRTUAL_ENV 10:23:00 ++ unset VIRTUAL_ENV_PROMPT 10:23:00 ++ '[' '!' nondestructive = nondestructive ']' 10:23:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 10:23:00 ++ export VIRTUAL_ENV 10:23:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:23:00 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:23:00 ++ export PATH 10:23:00 ++ '[' -n '' ']' 10:23:00 ++ '[' -z '' ']' 10:23:00 ++ _OLD_VIRTUAL_PS1= 10:23:00 ++ PS1='(omero-virtualenv) ' 10:23:00 ++ export PS1 10:23:00 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 10:23:00 ++ export VIRTUAL_ENV_PROMPT 10:23:00 ++ hash -r 10:23:00 + source docs/hudson/OMERO.sh 10:23:00 ++ set -e 10:23:00 ++ set -u 10:23:00 ++ set -x 10:23:00 ++ source docs/hudson/functions.sh 10:23:00 ++ echo Building merge_ci 10:23:00 Building merge_ci 10:23:00 ++ python3 ./build.py build-dev release-all 10:23:00 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:23:01 10:23:01 check-ivy: 10:23:01 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 10:23:01 Created dir: /home/omero/workspace/OMERO-build/src/target 10:23:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:23:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:23:03 10:23:03 build-scons: 10:23:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:23:06 No sub-builds to iterate on 10:23:06 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:23:06 10:23:06 buildlist: 10:23:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:23:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:23:07 10:23:07 clean: 10:23:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:23:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:23:08 10:23:08 python-clean: 10:23:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:23:08 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-635-1d697f848f-ice36-b23') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:23:08 warnings.warn( 10:23:08 running clean 10:23:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 10:23:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:23:09 10:23:09 python-clean: 10:23:09 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:23:09 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-635-1d697f848f-ice36-b23') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:23:09 warnings.warn( 10:23:09 running clean 10:23:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 10:23:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:23:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:23:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:23:10 10:23:10 python-clean: 10:23:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:23:10 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-635-1d697f848f-ice36-b23') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:23:10 warnings.warn( 10:23:10 running clean 10:23:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 10:23:10 Deleting directory /home/omero/workspace/OMERO-build/src/target 10:23:12 10:23:12 build-scons: 10:23:12 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:23:15 10:23:15 build: 10:23:15 No sub-builds to iterate on 10:23:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:23:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:23:16 10:23:16 tools-init: 10:23:16 no-op 10:23:17 10:23:17 retrieve: 10:23:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:23:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:24:16 10:24:16 prepare: 10:24:16 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 10:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 10:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:24:16 10:24:16 pre-compile: 10:24:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:24:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:24:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:24:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:24:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:24:41 10:24:41 compile: 10:24:41 no-op 10:24:41 10:24:41 package: 10:24:41 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 10:24:46 10:24:46 install: 10:24:46 :: delivering :: omero#omero_client;working@a682deefddb7 :: 5.6.3-635-1d697f848f-ice36-b23 :: integration :: Tue Jul 28 10:23:16 UTC 2026 10:24:46 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 10:24:46 :: publishing :: omero#omero_client 10:24:47 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-635-1d697f848f-ice36-b23/omero_client-5.6.3-635-1d697f848f-ice36-b23.jar 10:24:47 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-635-1d697f848f-ice36-b23/omero_client-5.6.3-635-1d697f848f-ice36-b23.xml 10:24:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:24:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:24:48 10:24:48 retrieve: 10:24:48 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:24:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:24:48 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:24:48 10:24:48 dist: 10:24:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 10:24:49 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 10:24:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:24:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:24:49 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 10:24:50 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 10:24:50 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 10:24:51 Entering /home/omero/workspace/OMERO-build/src/components/tests... 10:24:51 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:24:52 10:24:52 copy-licenses: 10:24:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:24:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 10:24:52 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 10:24:53 10:24:53 copy-history: 10:24:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:24:53 10:24:53 copy-etc: 10:24:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 10:24:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 10:24:54 10:24:54 copy-sql: 10:24:54 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 10:25:07 10:25:07 copy-server: 10:25:07 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 10:25:14 10:25:14 copy-client: 10:25:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 10:25:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 10:25:24 10:25:24 update-version: 10:25:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 10:25:24 10:25:24 create-workdirs: 10:25:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 10:25:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 10:25:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 10:25:24 10:25:24 copy-luts: 10:25:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:25:24 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:25:25 10:25:25 test-compile: 10:25:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:25:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:25:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:25:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:25:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:25:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:25:27 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:25:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:25:28 10:25:28 testng-init: 10:25:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:25:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:25:38 10:25:37,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 10:25:38 10:25:37,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - No custom configurators were discovered as a service. 10:25:38 10:25:37,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 10:25:38 10:25:37,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 10:25:38 10:25:38,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 10:25:38 10:25:38,005 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 10:25:38 10:25:38,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 10:25:38 10:25:38,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 10:25:38 10:25:38,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 10:25:38 10:25:38,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 10:25:38 10:25:38,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:25:38 10:25:38,014 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs multiple times on the classpath. 10:25:38 10:25:38,014 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:25:38 10:25:38,014 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 10:25:38 10:25:38,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 10:25:38 10:25:38,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 10:25:38 10:25:38,272 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 10:25:38 10:25:38,274 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 10:25:38 10:25:38,274 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Please move "immediateFlush" property into the enclosing appender. 10:25:38 10:25:38,346 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Setting the "immediateFlush" property of the enclosing appender to true 10:25:38 10:25:38,347 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 10:25:38 10:25:38,347 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 10:25:38 10:25:38,347 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 10:25:38 10:25:38,347 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 10:25:38 10:25:38,347 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 10:25:38 10:25:38,347 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 10:25:38 10:25:38,349 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47585784 - End of configuration. 10:25:38 10:25:38,351 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4e5563ef - Registering current configuration as safe fallback point 10:25:38 10:25:38,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 10:25:38 10:25:38 lifecycle.test-compile: 10:25:38 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:25:38 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:25:38 warning: [options] bootstrap class path not set in conjunction with -source 8 10:25:38 warning: [options] source value 8 is obsolete and will be removed in a future release 10:25:38 warning: [options] target value 8 is obsolete and will be removed in a future release 10:25:38 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 10:25:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:40 import omero.grid.RawAccessRequest; 10:25:40 ^ 10:25:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:41 import omero.grid.RawAccessRequest; 10:25:41 ^ 10:25:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:41 import omero.grid.RawAccessRequest; 10:25:41 ^ 10:25:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 10:25:41 import omero.model.ImportJob; 10:25:41 ^ 10:25:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:25:41 import omero.model.ImportJobI; 10:25:41 ^ 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 10:25:42 IObject link = (IObject) linkClass.newInstance(); 10:25:42 ^ 10:25:42 where T is a type-variable: 10:25:42 T extends Object declared in class Class 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 10:25:42 T copy = (T) obj.getClass().newInstance(); 10:25:42 ^ 10:25:42 where T is a type-variable: 10:25:42 T extends Object declared in class Class 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:42 RawAccessRequest raw = new RawAccessRequest(); 10:25:42 ^ 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:42 RawAccessRequest raw = new RawAccessRequest(); 10:25:42 ^ 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:25:42 raw.repoUuid = legacy.root().getHash().getValue(); 10:25:42 ^ 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 10:25:42 raw.command = "rm"; 10:25:42 ^ 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 10:25:42 raw.args = Arrays.asList(path); 10:25:42 ^ 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 10:25:42 final IObject link = linkClass.newInstance(); 10:25:42 ^ 10:25:42 where T is a type-variable: 10:25:42 T extends Object declared in class Class 10:25:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 10:25:42 originalLink.setChild(annotationClass.newInstance()); 10:25:42 ^ 10:25:42 where T is a type-variable: 10:25:42 T extends Object declared in class Class 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:25:43 RoiResult r = svc.findByImage(id, new RoiOptions()); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:43 final RawAccessRequest request = new RawAccessRequest(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:43 final RawAccessRequest request = new RawAccessRequest(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:25:43 request.repoUuid = repo.root().getHash().getValue(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 10:25:43 request.command = "exists"; 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 10:25:43 request.args = Collections.singletonList(dirPath); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:43 final RawAccessRequest request = new RawAccessRequest(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:25:43 final RawAccessRequest request = new RawAccessRequest(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:25:43 request.repoUuid = repo.root().getHash().getValue(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 10:25:43 request.command = "exists"; 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 10:25:43 request.args = Collections.singletonList(dirName); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 10:25:43 final ImportJob importJob = new ImportJobI(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:25:43 final ImportJob importJob = new ImportJobI(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 10:25:43 importJob.setImageName(omero.rtypes.rstring(name)); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 10:25:43 importJob.setImageDescription(omero.rtypes.rstring(desc)); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:25:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:25:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:25:43 final String savedName = sent.getImageName().getValue().toString(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:25:43 final String savedDesc = sent.getImageDescription().getValue().toString(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:25:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:25:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:25:43 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 10:25:43 ^ 10:25:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:25:43 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 10:25:43 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 RoiResult r = svc.findByImage(image.getId().getValue(), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 10:25:44 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 10:25:44 table = svc.getTable(f.getId().getValue()); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 RoiResult r = svc.findByImage(image.getId().getValue(), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:25:44 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:25:44 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:25:44 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 10:25:44 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 10:25:44 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:25:44 svc.getShapeStatsRestricted( 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:25:44 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 10:25:44 ^ 10:25:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:25:44 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:25:44 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:25:45 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:25:45 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:25:45 request.typesToIgnore = Collections.singletonList("Annotation"); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:25:45 request.typesToIgnore = Collections.singletonList("Annotation"); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:25:45 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:25:45 p2.setRelatedTo(p1); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:25:45 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:25:45 pixels1.setRelatedTo(pixels2); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:25:45 Pixels pixels = pixels1.getRelatedTo(); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:25:45 Assert.assertNull(pixels1.getRelatedTo()); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:25:45 pixels1.setRelatedTo(pixels2); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:25:45 Pixels pixels = pixels1.getRelatedTo(); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:25:45 Assert.assertNull(pixels1.getRelatedTo()); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:45 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:25:45 ^ 10:25:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:25:45 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:25:45 ^ 10:25:45 Note: Some input files use unchecked or unsafe operations. 10:25:45 Note: Recompile with -Xlint:unchecked for details. 10:25:45 91 warnings 10:25:47 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1183588036.tmp 10:25:47 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 10:25:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:25:48 :: delivering :: omero#OmeroJava-test;working@a682deefddb7 :: 5.6.3-635-1d697f848f-ice36-b23 :: integration :: Tue Jul 28 10:25:27 UTC 2026 10:25:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 10:25:48 :: publishing :: omero#OmeroJava-test 10:25:48 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-635-1d697f848f-ice36-b23.jar 10:25:48 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-635-1d697f848f-ice36-b23.xml 10:25:48 10:25:48 build-eclipse: 10:25:48 No sub-builds to iterate on 10:25:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:25:49 10:25:49 retrieve: 10:25:49 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:25:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:25:54 10:25:54 prepare: 10:25:54 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:25:58 10:25:58 release-clients: 10:25:58 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-635-1d697f848f-ice36-b23.zip 10:26:05 10:26:05 release-zip: 10:26:05 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-635-1d697f848f-ice36-b23.zip 10:26:17 10:26:17 BUILD SUCCESSFUL 10:26:17 Total time: 3 minutes 17 seconds 10:26:17 ++ '[' -d .git ']' 10:26:17 ++ python3 ./build.py release-src 10:26:17 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:26:18 10:26:18 release-src-git: 10:26:18 Releasing openmicroscopy-5.6.3-635-1d697f848f-ice36-b23 10:26:20 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-635-1d697f848f-ice36-b23.zip 10:26:20 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-635-1d697f848f-ice36-b23-base.zip 10:26:22 10:26:22 BUILD SUCCESSFUL 10:26:22 Total time: 4 seconds 10:26:22 ++ echo BUILD_NUMBER=23 10:26:22 ++ echo OMERO_BRANCH=merge_ci 10:26:22 ++ git_info 10:26:22 +++ git rev-parse HEAD 10:26:22 ++ HEAD=1d697f848f941981c7f17d801abb590ac59cb012 10:26:22 ++ git log --max-count=1 1d697f848f941981c7f17d801abb590ac59cb012 10:26:22 ++ env 10:26:22 ++ sort 10:26:22 Archiving artifacts 10:26:39 Finished: SUCCESS