01:18:33 Started by upstream project "Trigger" build number 37 01:18:33 originally caused by: 01:18:33 Started by timer 01:18:33 Running as SYSTEM 01:18:33 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:18:33 The recommended git tool is: NONE 01:18:33 No credentials specified 01:18:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:18:33 Fetching changes from the remote Git repository 01:18:33 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:18:33 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:18:33 > git --version # timeout=10 01:18:33 > git --version # 'git version 2.52.0' 01:18:33 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:18:36 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:18:36 Checking out Revision fb3ea5eb7e0fde9d62acf2f7f9bf6dedb1047332 (origin/merge_ci) 01:18:36 > git config core.sparsecheckout # timeout=10 01:18:36 > git checkout -f fb3ea5eb7e0fde9d62acf2f7f9bf6dedb1047332 # timeout=10 01:18:38 Commit message: "Add version.properties to etc/omero.properties" 01:18:38 > git rev-list --no-walk fbd2e29eae13d869964af9bdde0b2e7e9df7d503 # timeout=10 01:18:38 Cleaning workspace 01:18:38 > git rev-parse --verify HEAD # timeout=10 01:18:38 Resetting working tree 01:18:38 > git reset --hard # timeout=10 01:18:38 > git clean -fdx # timeout=10 01:19:06 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 23 01:19:06 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5622385251605110117.sh 01:19:06 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 01:19:06 + cd src 01:19:06 + export OMERO_BRANCH=merge_ci 01:19:06 + OMERO_BRANCH=merge_ci 01:19:06 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:19:06 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 01:19:33 + source /home/omero/settings.env 01:19:33 ++ OMERO_DB_HOST=pg 01:19:33 ++ OMERO_DB_USER=postgres 01:19:33 ++ OMERO_DB_PASS= 01:19:33 ++ OMERO_ROOT_PASS=omero 01:19:33 ++ OMERO_DATA_DIR=/OMERO 01:19:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:19:33 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:19:52 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:19:54 Collecting zeroc-ice==3.6.5 01:19:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:19:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.5 MB/s eta 0:00:00 01:19:57 Installing collected packages: zeroc-ice 01:20:01 Successfully installed zeroc-ice-3.6.5 01:20:01 01:20:01 [notice] A new release of pip available: 22.3.1 -> 26.1.2 01:20:01 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:20:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 01:20:02 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 01:20:02 Collecting setuptools<66 01:20:02 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 01:20:02 Collecting omero-py 01:20:02 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 01:20:02 Collecting appdirs 01:20:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:20:03 Collecting future 01:20:03 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:20:03 Collecting numpy<3,>=2 01:20:03 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:20:04 Collecting Pillow>=10.0.0 01:20:04 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:20:04 Collecting PyYAML 01:20:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:20:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:20:05 Collecting requests 01:20:05 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:20:05 Collecting portalocker 01:20:05 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 01:20:05 Collecting charset_normalizer<4,>=2 01:20:05 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 01:20:05 Collecting idna<4,>=2.5 01:20:05 Using cached idna-3.18-py3-none-any.whl (65 kB) 01:20:05 Collecting urllib3<3,>=1.26 01:20:05 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:20:05 Collecting certifi>=2023.5.7 01:20:06 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 01:20:06 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 01:20:07 Attempting uninstall: setuptools 01:20:07 Found existing installation: setuptools 65.5.1 01:20:07 Uninstalling setuptools-65.5.1: 01:20:08 Successfully uninstalled setuptools-65.5.1 01:21:00 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 01:21:00 01:21:00 [notice] A new release of pip available: 22.3.1 -> 26.1.2 01:21:00 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:21:00 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 01:21:00 ++ deactivate nondestructive 01:21:00 ++ '[' -n '' ']' 01:21:00 ++ '[' -n '' ']' 01:21:00 ++ hash -r 01:21:00 ++ '[' -n '' ']' 01:21:00 ++ unset VIRTUAL_ENV 01:21:00 ++ unset VIRTUAL_ENV_PROMPT 01:21:00 ++ '[' '!' nondestructive = nondestructive ']' 01:21:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 01:21:00 ++ export VIRTUAL_ENV 01:21:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:21:00 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:21:00 ++ export PATH 01:21:00 ++ '[' -n '' ']' 01:21:00 ++ '[' -z '' ']' 01:21:00 ++ _OLD_VIRTUAL_PS1= 01:21:00 ++ PS1='(omero-virtualenv) ' 01:21:00 ++ export PS1 01:21:00 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 01:21:00 ++ export VIRTUAL_ENV_PROMPT 01:21:00 ++ hash -r 01:21:00 + source docs/hudson/OMERO.sh 01:21:00 ++ set -e 01:21:00 ++ set -u 01:21:00 ++ set -x 01:21:00 ++ source docs/hudson/functions.sh 01:21:00 ++ echo Building merge_ci 01:21:00 Building merge_ci 01:21:00 ++ python3 ./build.py build-dev release-all 01:21:00 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:21:01 01:21:01 check-ivy: 01:21:01 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:21:01 Created dir: /home/omero/workspace/OMERO-build/src/target 01:21:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:21:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:21:03 01:21:03 build-scons: 01:21:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:21:05 No sub-builds to iterate on 01:21:05 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:21:05 01:21:05 buildlist: 01:21:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:21:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:21:06 01:21:06 clean: 01:21:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:21:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:21:07 01:21:07 python-clean: 01:21:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:21:07 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-fb3ea5eb7e-ice36-b27') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:21:07 warnings.warn( 01:21:07 running clean 01:21:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:21:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:21:08 01:21:08 python-clean: 01:21:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:21:08 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-fb3ea5eb7e-ice36-b27') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:21:08 warnings.warn( 01:21:08 running clean 01:21:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:21:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:21:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:21:09 01:21:09 python-clean: 01:21:09 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:21:09 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-fb3ea5eb7e-ice36-b27') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:21:09 warnings.warn( 01:21:09 running clean 01:21:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:21:09 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:21:10 01:21:10 build-scons: 01:21:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:21:12 01:21:12 build: 01:21:12 No sub-builds to iterate on 01:21:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:21:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:21:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:21:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:21:13 01:21:13 tools-init: 01:21:13 no-op 01:21:14 01:21:14 retrieve: 01:21:14 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:21:14 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:22:38 01:22:38 prepare: 01:22:38 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:22:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:22:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:22:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:22:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:38 01:22:38 pre-compile: 01:22:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:53 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:55 01:22:55 compile: 01:22:55 no-op 01:22:55 01:22:55 package: 01:22:55 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:22:59 01:22:59 install: 01:22:59 :: delivering :: omero#omero_client;working@4590dbd6a4a0 :: 5.6.3-623-fb3ea5eb7e-ice36-b27 :: integration :: Thu Jul 30 01:21:13 UTC 2026 01:22:59 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:22:59 :: publishing :: omero#omero_client 01:22:59 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-fb3ea5eb7e-ice36-b27/omero_client-5.6.3-623-fb3ea5eb7e-ice36-b27.jar 01:22:59 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-fb3ea5eb7e-ice36-b27/omero_client-5.6.3-623-fb3ea5eb7e-ice36-b27.xml 01:23:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:00 01:23:00 retrieve: 01:23:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:01 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:23:01 01:23:01 dist: 01:23:01 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:23:01 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:23:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:23:01 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:23:02 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:23:02 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:23:03 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:23:03 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:23:03 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:23:04 01:23:04 copy-licenses: 01:23:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:23:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:23:04 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:23:05 01:23:05 copy-history: 01:23:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:23:05 01:23:05 copy-etc: 01:23:05 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:23:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:23:05 01:23:05 copy-sql: 01:23:05 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:23:18 01:23:18 copy-server: 01:23:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 01:23:23 01:23:23 copy-client: 01:23:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:23:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 01:23:32 01:23:32 update-version: 01:23:32 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:23:32 01:23:32 create-workdirs: 01:23:32 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:23:32 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:23:32 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 01:23:32 01:23:32 copy-luts: 01:23:32 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:23:32 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:23:33 01:23:33 test-compile: 01:23:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:23:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:35 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:23:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:23:35 01:23:35 testng-init: 01:23:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:44 01:23:43,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 01:23:44 01:23:43,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - No custom configurators were discovered as a service. 01:23:44 01:23:43,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:23:44 01:23:43,986 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:23:44 01:23:43,989 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:23:44 01:23:43,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:23:44 01:23:43,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:23:44 01:23:43,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:23:44 01:23:43,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:23:44 01:23:43,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:23:44 01:23:43,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:23:44 01:23:43,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f385ee9 - Resource [logback.xml] occurs multiple times on the classpath. 01:23:44 01:23:43,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f385ee9 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:23:44 01:23:43,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f385ee9 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:23:44 01:23:44,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:23:44 01:23:44,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:23:44 01:23:44,266 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:23:44 01:23:44,269 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39ad5a7d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:23:44 01:23:44,269 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39ad5a7d - Please move "immediateFlush" property into the enclosing appender. 01:23:44 01:23:44,353 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39ad5a7d - Setting the "immediateFlush" property of the enclosing appender to true 01:23:44 01:23:44,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:23:44 01:23:44,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:23:44 01:23:44,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:23:44 01:23:44,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:23:44 01:23:44,354 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:23:44 01:23:44,354 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:23:44 01:23:44,356 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1492c9d - End of configuration. 01:23:44 01:23:44,358 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@24df8abf - Registering current configuration as safe fallback point 01:23:44 01:23:44,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 365 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:23:44 01:23:44 lifecycle.test-compile: 01:23:44 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:23:44 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:23:44 warning: [options] bootstrap class path not set in conjunction with -source 8 01:23:44 warning: [options] source value 8 is obsolete and will be removed in a future release 01:23:44 warning: [options] target value 8 is obsolete and will be removed in a future release 01:23:44 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 01:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:46 import omero.grid.RawAccessRequest; 01:23:46 ^ 01:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:46 import omero.grid.RawAccessRequest; 01:23:46 ^ 01:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:47 import omero.grid.RawAccessRequest; 01:23:47 ^ 01:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:47 import omero.model.ImportJob; 01:23:47 ^ 01:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:23:47 import omero.model.ImportJobI; 01:23:47 ^ 01:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:23:47 IObject link = (IObject) linkClass.newInstance(); 01:23:47 ^ 01:23:47 where T is a type-variable: 01:23:47 T extends Object declared in class Class 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:23:48 T copy = (T) obj.getClass().newInstance(); 01:23:48 ^ 01:23:48 where T is a type-variable: 01:23:48 T extends Object declared in class Class 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:48 RawAccessRequest raw = new RawAccessRequest(); 01:23:48 ^ 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:48 RawAccessRequest raw = new RawAccessRequest(); 01:23:48 ^ 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:23:48 raw.repoUuid = legacy.root().getHash().getValue(); 01:23:48 ^ 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:23:48 raw.command = "rm"; 01:23:48 ^ 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:23:48 raw.args = Arrays.asList(path); 01:23:48 ^ 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:23:48 final IObject link = linkClass.newInstance(); 01:23:48 ^ 01:23:48 where T is a type-variable: 01:23:48 T extends Object declared in class Class 01:23:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:23:48 originalLink.setChild(annotationClass.newInstance()); 01:23:48 ^ 01:23:48 where T is a type-variable: 01:23:48 T extends Object declared in class Class 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:23:49 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:49 final RawAccessRequest request = new RawAccessRequest(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:49 final RawAccessRequest request = new RawAccessRequest(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:23:49 request.repoUuid = repo.root().getHash().getValue(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:23:49 request.command = "exists"; 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:23:49 request.args = Collections.singletonList(dirPath); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:49 final RawAccessRequest request = new RawAccessRequest(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:49 final RawAccessRequest request = new RawAccessRequest(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:23:49 request.repoUuid = repo.root().getHash().getValue(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:23:49 request.command = "exists"; 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:23:49 request.args = Collections.singletonList(dirName); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:49 final ImportJob importJob = new ImportJobI(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:23:49 final ImportJob importJob = new ImportJobI(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:23:49 importJob.setImageName(omero.rtypes.rstring(name)); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:23:49 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:23:49 final String savedName = sent.getImageName().getValue().toString(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:23:49 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:23:49 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:23:49 ^ 01:23:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:23:49 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:23:49 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 RoiResult r = svc.findByImage(image.getId().getValue(), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:23:50 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:23:50 table = svc.getTable(f.getId().getValue()); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 RoiResult r = svc.findByImage(image.getId().getValue(), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:23:50 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:23:50 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:23:50 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 01:23:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:23:50 svc.getShapeStatsRestricted( 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:23:50 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:50 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:50 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:50 request.typesToIgnore = Collections.singletonList("Annotation"); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:50 request.typesToIgnore = Collections.singletonList("Annotation"); 01:23:50 ^ 01:23:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:23:50 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:51 p2.setRelatedTo(p1); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:51 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:51 pixels1.setRelatedTo(pixels2); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:51 Pixels pixels = pixels1.getRelatedTo(); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:51 Assert.assertNull(pixels1.getRelatedTo()); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:51 pixels1.setRelatedTo(pixels2); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:51 Pixels pixels = pixels1.getRelatedTo(); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:51 Assert.assertNull(pixels1.getRelatedTo()); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:51 ^ 01:23:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:51 ^ 01:23:51 Note: Some input files use unchecked or unsafe operations. 01:23:51 Note: Recompile with -Xlint:unchecked for details. 01:23:51 91 warnings 01:23:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1639141022.tmp 01:23:51 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:23:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:51 :: delivering :: omero#OmeroJava-test;working@4590dbd6a4a0 :: 5.6.3-623-fb3ea5eb7e-ice36-b27 :: integration :: Thu Jul 30 01:23:35 UTC 2026 01:23:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:23:51 :: publishing :: omero#OmeroJava-test 01:23:51 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-fb3ea5eb7e-ice36-b27.jar 01:23:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-fb3ea5eb7e-ice36-b27.xml 01:23:52 01:23:52 build-eclipse: 01:23:52 No sub-builds to iterate on 01:23:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:23:52 01:23:52 retrieve: 01:23:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:57 01:23:57 prepare: 01:23:57 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:24:01 01:24:01 release-clients: 01:24:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-623-fb3ea5eb7e-ice36-b27.zip 01:24:06 01:24:06 release-zip: 01:24:06 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-623-fb3ea5eb7e-ice36-b27.zip 01:24:19 01:24:19 BUILD SUCCESSFUL 01:24:19 Total time: 3 minutes 18 seconds 01:24:19 ++ '[' -d .git ']' 01:24:19 ++ python3 ./build.py release-src 01:24:19 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:24:20 01:24:20 release-src-git: 01:24:20 Releasing openmicroscopy-5.6.3-623-fb3ea5eb7e-ice36-b27 01:24:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-fb3ea5eb7e-ice36-b27.zip 01:24:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-fb3ea5eb7e-ice36-b27-base.zip 01:24:23 01:24:23 BUILD SUCCESSFUL 01:24:23 Total time: 4 seconds 01:24:23 ++ echo BUILD_NUMBER=27 01:24:23 ++ echo OMERO_BRANCH=merge_ci 01:24:23 ++ git_info 01:24:23 +++ git rev-parse HEAD 01:24:23 ++ HEAD=fb3ea5eb7e0fde9d62acf2f7f9bf6dedb1047332 01:24:23 ++ git log --max-count=1 fb3ea5eb7e0fde9d62acf2f7f9bf6dedb1047332 01:24:23 ++ env 01:24:23 ++ sort 01:24:23 Archiving artifacts 01:24:41 Finished: SUCCESS