01:31:59 Started by upstream project "Trigger" build number 336 01:31:59 originally caused by: 01:31:59 Started by timer 01:31:59 Running as SYSTEM 01:31:59 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:31:59 The recommended git tool is: NONE 01:31:59 No credentials specified 01:31:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:31:59 Fetching changes from the remote Git repository 01:31:59 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:31:59 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:31:59 > git --version # timeout=10 01:31:59 > git --version # 'git version 2.43.5' 01:31:59 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:32:05 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:32:05 Checking out Revision d8e0389157492ddb9d5cb287d00283d0aa9496ff (origin/merge_ci) 01:32:05 > git config core.sparsecheckout # timeout=10 01:32:05 > git checkout -f d8e0389157492ddb9d5cb287d00283d0aa9496ff # timeout=10 01:32:05 Commit message: "Add version.properties to etc/omero.properties" 01:32:05 > git rev-list --no-walk 28f0171748e95344f2b9a026ebaaa0fd4fdaea74 # timeout=10 01:32:05 Cleaning workspace 01:32:05 > git rev-parse --verify HEAD # timeout=10 01:32:05 Resetting working tree 01:32:05 > git reset --hard # timeout=10 01:32:05 > git clean -fdx # timeout=10 01:32:05 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 283 01:32:05 [OMERO-build] $ /bin/bash -xe /tmp/jenkins15066091295974360004.sh 01:32:05 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 01:32:05 + cd src 01:32:05 + export OMERO_BRANCH=merge_ci 01:32:05 + OMERO_BRANCH=merge_ci 01:32:05 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:32:05 + source /home/omero/settings.env 01:32:05 ++ OMERO_DB_HOST=pg 01:32:05 ++ OMERO_DB_USER=postgres 01:32:05 ++ OMERO_DB_PASS= 01:32:05 ++ OMERO_ROOT_PASS=omero 01:32:05 ++ OMERO_DATA_DIR=/OMERO 01:32:05 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:32:05 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:32:08 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 01:32:10 Collecting zeroc-ice==3.6.5 01:32:11 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 01:32:13 WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. 01:32:13 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:32:13 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 01:32:13 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.7.0) 01:32:14 Collecting setuptools 01:32:14 Using cached setuptools-75.8.0-py3-none-any.whl (1.2 MB) 01:32:14 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5) 01:32:14 Collecting omero-py 01:32:14 Downloading omero_py-5.19.6-py3-none-any.whl (2.8 MB) 01:32:15 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 01:32:15 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 01:32:15 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 01:32:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 01:32:15 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 01:32:15 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 01:32:15 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 01:32:15 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 01:32:15 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 01:32:15 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 01:32:15 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 01:32:15 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 01:32:15 Installing collected packages: setuptools, omero-py 01:32:15 Attempting uninstall: setuptools 01:32:15 Found existing installation: setuptools 75.7.0 01:32:15 Uninstalling setuptools-75.7.0: 01:32:15 Successfully uninstalled setuptools-75.7.0 01:32:16 Attempting uninstall: omero-py 01:32:16 Found existing installation: omero-py 5.19.5 01:32:17 Uninstalling omero-py-5.19.5: 01:32:19 Successfully uninstalled omero-py-5.19.5 01:32:22 Successfully installed omero-py-5.19.6 setuptools-75.8.0 01:32:22 WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. 01:32:22 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:32:22 + source docs/hudson/OMERO.sh 01:32:22 ++ set -e 01:32:22 ++ set -u 01:32:22 ++ set -x 01:32:22 ++ source docs/hudson/functions.sh 01:32:22 ++ echo Building merge_ci 01:32:22 Building merge_ci 01:32:22 ++ python3 ./build.py build-dev release-all 01:32:22 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:32:22 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:32:24 01:32:24 check-ivy: 01:32:24 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:32:24 Created dir: /home/omero/workspace/OMERO-build/src/target 01:32:25 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:32:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:32:26 01:32:26 build-scons: 01:32:26 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:32:27 No sub-builds to iterate on 01:32:27 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:32:28 01:32:28 buildlist: 01:32:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:32:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:32:28 01:32:28 clean: 01:32:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:32:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:32:28 01:32:28 python-clean: 01:32:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:32:28 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-d8e0389157-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:32:28 warnings.warn( 01:32:28 running clean 01:32:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:32:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:32:28 01:32:28 python-clean: 01:32:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:32:28 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-d8e0389157-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:32:28 warnings.warn( 01:32:28 running clean 01:32:29 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:32:29 01:32:29 python-clean: 01:32:29 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:32:29 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-d8e0389157-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:32:29 warnings.warn( 01:32:29 running clean 01:32:29 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:32:29 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:32:29 01:32:29 build-scons: 01:32:29 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:32:29 01:32:29 build: 01:32:29 No sub-builds to iterate on 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:32:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:32:29 01:32:29 tools-init: 01:32:29 no-op 01:32:29 01:32:29 retrieve: 01:32:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:32:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:32:30 WARNING: An illegal reflective access operation has occurred 01:32:30 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 01:32:30 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 01:32:30 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 01:32:30 WARNING: All illegal access operations will be denied in a future release 01:32:48 01:32:48 prepare: 01:32:48 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:32:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:32:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:32:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:32:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:32:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:32:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:32:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:32:48 01:32:48 pre-compile: 01:32:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:32:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:32:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:32:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:32:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:32:49 01:32:49 compile: 01:32:49 no-op 01:32:49 01:32:49 package: 01:32:49 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:32:49 01:32:49 install: 01:32:49 :: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-531-d8e0389157-ice36 :: integration :: Fri Jan 10 01:32:29 UTC 2025 01:32:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:32:49 :: publishing :: omero#omero_client 01:32:49 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-531-d8e0389157-ice36/omero_client-5.6.3-531-d8e0389157-ice36.jar 01:32:49 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-531-d8e0389157-ice36/omero_client-5.6.3-531-d8e0389157-ice36.xml 01:32:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:32:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:32:50 01:32:50 retrieve: 01:32:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:32:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:32:50 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:32:50 01:32:50 dist: 01:32:50 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:32:50 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:32:50 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:32:50 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:32:50 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:32:50 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:32:50 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:32:50 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:32:50 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:32:51 01:32:51 copy-licenses: 01:32:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:32:51 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:32:51 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:32:51 01:32:51 copy-history: 01:32:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:32:51 01:32:51 copy-etc: 01:32:51 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:32:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:32:52 01:32:52 copy-sql: 01:32:52 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:33:03 01:33:03 copy-server: 01:33:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 01:33:03 01:33:03 copy-client: 01:33:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:33:04 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 01:33:04 01:33:04 update-version: 01:33:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:33:04 01:33:04 create-workdirs: 01:33:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:33:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:33:04 01:33:04 copy-luts: 01:33:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:33:04 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:33:05 01:33:05 test-compile: 01:33:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:33:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:33:06 01:33:06 testng-init: 01:33:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:33:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:33:10 01:33:09,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 01:33:10 01:33:09,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - No custom configurators were discovered as a service. 01:33:10 01:33:09,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:33:10 01:33:09,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:33:10 01:33:09,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:33:10 01:33:09,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:33:10 01:33:09,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:33:10 01:33:09,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:33:10 01:33:09,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:33:10 01:33:09,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:33:10 01:33:09,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:33:10 01:33:09,914 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@591ad4b3 - Resource [logback.xml] occurs multiple times on the classpath. 01:33:10 01:33:09,914 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@591ad4b3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:33:10 01:33:09,914 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@591ad4b3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:33:10 01:33:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:33:10 01:33:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:33:10 01:33:10,149 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:33:10 01:33:10,151 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@70bfc7d5 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:33:10 01:33:10,151 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@70bfc7d5 - Please move "immediateFlush" property into the enclosing appender. 01:33:10 01:33:10,215 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@70bfc7d5 - Setting the "immediateFlush" property of the enclosing appender to true 01:33:10 01:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:33:10 01:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:33:10 01:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:33:10 01:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:33:10 01:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:33:10 01:33:10,216 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:33:10 01:33:10,218 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2ea6687b - End of configuration. 01:33:10 01:33:10,220 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5fdd9b96 - Registering current configuration as safe fallback point 01:33:10 01:33:10,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 308 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:33:10 01:33:10 lifecycle.test-compile: 01:33:10 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:33:10 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:33:10 warning: [options] bootstrap class path not set in conjunction with -source 8 01:33:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:15 import omero.grid.RawAccessRequest; 01:33:15 ^ 01:33:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:15 import omero.grid.RawAccessRequest; 01:33:15 ^ 01:33:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:15 import omero.grid.RawAccessRequest; 01:33:15 ^ 01:33:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:33:15 import omero.model.ImportJob; 01:33:15 ^ 01:33:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:33:15 import omero.model.ImportJobI; 01:33:15 ^ 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:33:16 IObject link = (IObject) linkClass.newInstance(); 01:33:16 ^ 01:33:16 where T is a type-variable: 01:33:16 T extends Object declared in class Class 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:33:16 T copy = (T) obj.getClass().newInstance(); 01:33:16 ^ 01:33:16 where T is a type-variable: 01:33:16 T extends Object declared in class Class 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:16 RawAccessRequest raw = new RawAccessRequest(); 01:33:16 ^ 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:16 RawAccessRequest raw = new RawAccessRequest(); 01:33:16 ^ 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:33:16 raw.repoUuid = legacy.root().getHash().getValue(); 01:33:16 ^ 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:33:16 raw.command = "rm"; 01:33:16 ^ 01:33:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:33:16 raw.args = Arrays.asList(path); 01:33:16 ^ 01:33:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:33:17 final IObject link = linkClass.newInstance(); 01:33:17 ^ 01:33:17 where T is a type-variable: 01:33:17 T extends Object declared in class Class 01:33:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:33:17 originalLink.setChild(annotationClass.newInstance()); 01:33:17 ^ 01:33:17 where T is a type-variable: 01:33:17 T extends Object declared in class Class 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:33:18 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:18 final RawAccessRequest request = new RawAccessRequest(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:18 final RawAccessRequest request = new RawAccessRequest(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:33:18 request.repoUuid = repo.root().getHash().getValue(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:33:18 request.command = "exists"; 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:33:18 request.args = Collections.singletonList(dirPath); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:18 final RawAccessRequest request = new RawAccessRequest(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:33:18 final RawAccessRequest request = new RawAccessRequest(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:33:18 request.repoUuid = repo.root().getHash().getValue(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:33:18 request.command = "exists"; 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:33:18 request.args = Collections.singletonList(dirName); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:33:18 final ImportJob importJob = new ImportJobI(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:33:18 final ImportJob importJob = new ImportJobI(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:33:18 importJob.setImageName(omero.rtypes.rstring(name)); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:33:18 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:33:18 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:33:18 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:33:18 final String savedName = sent.getImageName().getValue().toString(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:33:18 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:33:18 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:33:18 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:33:18 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:33:18 ^ 01:33:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:33:18 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:33:18 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 RoiResult r = svc.findByImage(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:33:19 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:33:19 table = svc.getTable(f.getId().getValue()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 RoiResult r = svc.findByImage(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:33:19 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:33:19 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 01:33:19 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:33:19 svc.getShapeStatsRestricted( 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:33:19 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:33:19 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:33:19 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:33:19 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:33:19 request.typesToIgnore = Collections.singletonList("Annotation"); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:33:19 request.typesToIgnore = Collections.singletonList("Annotation"); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:33:19 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:33:19 p2.setRelatedTo(p1); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:33:19 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:33:19 pixels1.setRelatedTo(pixels2); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:33:19 Pixels pixels = pixels1.getRelatedTo(); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:33:19 Assert.assertNull(pixels1.getRelatedTo()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:33:19 pixels1.setRelatedTo(pixels2); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:33:19 Pixels pixels = pixels1.getRelatedTo(); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:33:19 Assert.assertNull(pixels1.getRelatedTo()); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:33:19 ^ 01:33:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:33:19 ^ 01:33:19 Note: Some input files use unchecked or unsafe operations. 01:33:19 Note: Recompile with -Xlint:unchecked for details. 01:33:19 88 warnings 01:33:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_93799848.tmp 01:33:19 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:33:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:33:19 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-531-d8e0389157-ice36 :: integration :: Fri Jan 10 01:33:05 UTC 2025 01:33:19 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:33:19 :: publishing :: omero#OmeroJava-test 01:33:19 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-531-d8e0389157-ice36.jar 01:33:19 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-531-d8e0389157-ice36.xml 01:33:19 01:33:19 build-eclipse: 01:33:19 No sub-builds to iterate on 01:33:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:33:20 01:33:20 retrieve: 01:33:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:33:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:33:22 01:33:22 prepare: 01:33:22 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:33:23 01:33:23 release-clients: 01:33:23 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-531-d8e0389157-ice36.zip 01:33:29 01:33:29 release-zip: 01:33:29 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-531-d8e0389157-ice36.zip 01:33:41 01:33:41 BUILD SUCCESSFUL 01:33:41 Total time: 1 minute 18 seconds 01:33:41 ++ '[' -d .git ']' 01:33:41 ++ python3 ./build.py release-src 01:33:41 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:33:41 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:33:42 01:33:42 release-src-git: 01:33:42 Releasing openmicroscopy-5.6.3-531-d8e0389157-ice36 01:33:44 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-531-d8e0389157-ice36.zip 01:33:44 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-531-d8e0389157-ice36-base.zip 01:33:46 01:33:46 BUILD SUCCESSFUL 01:33:46 Total time: 4 seconds 01:33:46 ++ echo BUILD_NUMBER=287 01:33:46 ++ echo OMERO_BRANCH=merge_ci 01:33:46 ++ git_info 01:33:46 +++ git rev-parse HEAD 01:33:46 ++ HEAD=d8e0389157492ddb9d5cb287d00283d0aa9496ff 01:33:46 ++ git log --max-count=1 d8e0389157492ddb9d5cb287d00283d0aa9496ff 01:33:46 ++ env 01:33:46 ++ sort 01:33:46 Archiving artifacts 01:34:14 Finished: SUCCESS