11:55:11 Started by upstream project "Trigger" build number 40 11:55:11 originally caused by: 11:55:11 Started by user devspace 11:55:11 Running as SYSTEM 11:55:11 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 11:55:11 The recommended git tool is: NONE 11:55:11 No credentials specified 11:55:11 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 11:55:11 Fetching changes from the remote Git repository 11:55:11 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 11:55:11 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 11:55:11 > git --version # timeout=10 11:55:11 > git --version # 'git version 2.52.0' 11:55:11 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:55:16 > git rev-parse origin/merge_ci^{commit} # timeout=10 11:55:16 Checking out Revision 6b3a800bcba4f892b1229eb8d477e595c95d7aa5 (origin/merge_ci) 11:55:16 > git config core.sparsecheckout # timeout=10 11:55:16 > git checkout -f 6b3a800bcba4f892b1229eb8d477e595c95d7aa5 # timeout=10 11:55:29 Commit message: "Add version.properties to etc/omero.properties" 11:55:29 > git rev-list --no-walk f8e321e05513b563fe3a020cc6c21f6e22b2e0cc # timeout=10 11:55:30 Cleaning workspace 11:55:30 > git rev-parse --verify HEAD # timeout=10 11:55:30 Resetting working tree 11:55:30 > git reset --hard # timeout=10 11:55:30 > git clean -fdx # timeout=10 11:55:57 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 25 11:55:58 [OMERO-build] $ /bin/bash -xe /tmp/jenkins371234689474910374.sh 11:55:58 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 11:55:58 + cd src 11:55:58 + export OMERO_BRANCH=merge_ci 11:55:58 + OMERO_BRANCH=merge_ci 11:55:58 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 11:55:58 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 11:56:22 + source /home/omero/settings.env 11:56:22 ++ OMERO_DB_HOST=pg 11:56:22 ++ OMERO_DB_USER=postgres 11:56:22 ++ OMERO_DB_PASS= 11:56:22 ++ OMERO_ROOT_PASS=omero 11:56:22 ++ OMERO_DATA_DIR=/OMERO 11:56:22 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:56:22 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 11:56:40 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 11:56:41 Collecting zeroc-ice==3.6.5 11:56:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 11:56:44 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.4 MB/s eta 0:00:00 11:56:44 Installing collected packages: zeroc-ice 11:56:48 Successfully installed zeroc-ice-3.6.5 11:56:48 11:56:48 [notice] A new release of pip available: 22.3.1 -> 26.2 11:56:48 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:56:48 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 11:56:49 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 11:56:50 Collecting setuptools<66 11:56:50 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 11:56:50 Collecting omero-py 11:56:50 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 11:56:50 Collecting appdirs 11:56:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:56:50 Collecting future 11:56:50 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:56:51 Collecting numpy<3,>=2 11:56:51 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 11:56:52 Collecting Pillow>=10.0.0 11:56:52 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 11:56:52 Collecting PyYAML 11:56:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 11:56:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 11:56:52 Collecting requests 11:56:52 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 11:56:53 Collecting portalocker 11:56:53 Downloading portalocker-4.0.0-py3-none-any.whl (33 kB) 11:56:53 Collecting charset_normalizer<4,>=2 11:56:53 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 11:56:53 Collecting idna<4,>=2.5 11:56:53 Using cached idna-3.18-py3-none-any.whl (65 kB) 11:56:53 Collecting urllib3<3,>=1.26 11:56:53 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 11:56:53 Collecting certifi>=2023.5.7 11:56:54 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 11:56:54 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 11:56:55 Attempting uninstall: setuptools 11:56:55 Found existing installation: setuptools 65.5.1 11:56:55 Uninstalling setuptools-65.5.1: 11:56:56 Successfully uninstalled setuptools-65.5.1 11:57:45 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.0.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 11:57:45 11:57:45 [notice] A new release of pip available: 22.3.1 -> 26.2 11:57:45 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:57:45 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 11:57:45 ++ deactivate nondestructive 11:57:45 ++ '[' -n '' ']' 11:57:45 ++ '[' -n '' ']' 11:57:45 ++ hash -r 11:57:45 ++ '[' -n '' ']' 11:57:45 ++ unset VIRTUAL_ENV 11:57:45 ++ unset VIRTUAL_ENV_PROMPT 11:57:45 ++ '[' '!' nondestructive = nondestructive ']' 11:57:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 11:57:45 ++ export VIRTUAL_ENV 11:57:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:57:45 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:57:45 ++ export PATH 11:57:45 ++ '[' -n '' ']' 11:57:45 ++ '[' -z '' ']' 11:57:45 ++ _OLD_VIRTUAL_PS1= 11:57:45 ++ PS1='(omero-virtualenv) ' 11:57:45 ++ export PS1 11:57:45 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 11:57:45 ++ export VIRTUAL_ENV_PROMPT 11:57:45 ++ hash -r 11:57:45 + source docs/hudson/OMERO.sh 11:57:45 ++ set -e 11:57:45 ++ set -u 11:57:45 ++ set -x 11:57:45 ++ source docs/hudson/functions.sh 11:57:45 ++ echo Building merge_ci 11:57:45 Building merge_ci 11:57:45 ++ python3 ./build.py build-dev release-all 11:57:45 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:57:46 11:57:46 check-ivy: 11:57:46 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 11:57:46 Created dir: /home/omero/workspace/OMERO-build/src/target 11:57:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:57:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:57:48 11:57:48 build-scons: 11:57:48 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:57:49 No sub-builds to iterate on 11:57:50 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:57:50 11:57:50 buildlist: 11:57:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:57:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:57:50 11:57:50 clean: 11:57:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:57:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:57:51 11:57:51 python-clean: 11:57:51 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:57:51 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-6b3a800bcb-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:57:51 warnings.warn( 11:57:51 running clean 11:57:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 11:57:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:57:52 11:57:52 python-clean: 11:57:52 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:57:52 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-6b3a800bcb-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:57:52 warnings.warn( 11:57:52 running clean 11:57:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 11:57:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:57:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:57:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:57:54 11:57:54 python-clean: 11:57:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:57:54 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-6b3a800bcb-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:57:54 warnings.warn( 11:57:54 running clean 11:57:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 11:57:54 Deleting directory /home/omero/workspace/OMERO-build/src/target 11:57:55 11:57:55 build-scons: 11:57:55 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:57:56 11:57:56 build: 11:57:56 No sub-builds to iterate on 11:57:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:57:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:57:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:57:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:57:58 11:57:58 tools-init: 11:57:58 no-op 11:57:58 11:57:58 retrieve: 11:57:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:57:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:59:25 11:59:25 prepare: 11:59:25 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:59:25 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 11:59:25 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 11:59:25 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:59:25 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:59:25 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:59:25 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:59:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:59:25 11:59:25 pre-compile: 11:59:25 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:59:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:59:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:59:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:59:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:59:40 11:59:40 compile: 11:59:40 no-op 11:59:40 11:59:40 package: 11:59:40 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 11:59:44 11:59:44 install: 11:59:44 :: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-622-6b3a800bcb-ice36-b29 :: integration :: Sat Aug 01 11:57:57 UTC 2026 11:59:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 11:59:44 :: publishing :: omero#omero_client 11:59:44 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-6b3a800bcb-ice36-b29/omero_client-5.6.3-622-6b3a800bcb-ice36-b29.jar 11:59:44 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-6b3a800bcb-ice36-b29/omero_client-5.6.3-622-6b3a800bcb-ice36-b29.xml 11:59:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:59:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:59:45 11:59:45 retrieve: 11:59:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:59:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:59:46 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:59:46 11:59:46 dist: 11:59:46 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 11:59:46 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 11:59:46 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:59:46 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:59:46 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 11:59:47 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 11:59:47 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 11:59:47 Entering /home/omero/workspace/OMERO-build/src/components/tests... 11:59:48 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:59:48 11:59:48 copy-licenses: 11:59:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:59:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 11:59:48 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 11:59:49 11:59:49 copy-history: 11:59:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:59:49 11:59:49 copy-etc: 11:59:49 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 11:59:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 11:59:49 11:59:49 copy-sql: 11:59:49 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 12:00:02 12:00:02 copy-server: 12:00:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 12:00:07 12:00:07 copy-client: 12:00:07 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 12:00:11 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 12:00:15 12:00:15 update-version: 12:00:15 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 12:00:15 12:00:15 create-workdirs: 12:00:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 12:00:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 12:00:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 12:00:15 12:00:15 copy-luts: 12:00:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:00:15 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:00:16 12:00:16 test-compile: 12:00:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:00:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:00:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:00:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:00:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:00:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:00:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:00:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:00:19 12:00:19 testng-init: 12:00:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:00:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:00:27 12:00:27,147 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 12:00:27 12:00:27,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 12:00:27 12:00:27,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 12:00:27 12:00:27,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 12:00:27 12:00:27,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 12:00:27 12:00:27,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 12:00:27 12:00:27,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 12:00:27 12:00:27,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 12:00:27 12:00:27,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 12:00:27 12:00:27,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 12:00:27 12:00:27,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:00:27 12:00:27,171 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 12:00:27 12:00:27,171 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:00:27 12:00:27,171 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 12:00:27 12:00:27,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 12:00:27 12:00:27,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 12:00:27 12:00:27,436 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 12:00:27 12:00:27,439 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 12:00:27 12:00:27,439 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 12:00:27 12:00:27,514 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 12:00:27 12:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 12:00:27 12:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 12:00:27 12:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 12:00:27 12:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 12:00:27 12:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 12:00:27 12:00:27,515 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 12:00:27 12:00:27,517 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 12:00:27 12:00:27,519 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 12:00:27 12:00:27,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 354 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 12:00:27 12:00:27 lifecycle.test-compile: 12:00:27 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:00:27 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:00:28 warning: [options] bootstrap class path not set in conjunction with -source 8 12:00:28 warning: [options] source value 8 is obsolete and will be removed in a future release 12:00:28 warning: [options] target value 8 is obsolete and will be removed in a future release 12:00:28 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 12:00:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:29 import omero.grid.RawAccessRequest; 12:00:29 ^ 12:00:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:30 import omero.grid.RawAccessRequest; 12:00:30 ^ 12:00:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:30 import omero.grid.RawAccessRequest; 12:00:30 ^ 12:00:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 12:00:30 import omero.model.ImportJob; 12:00:30 ^ 12:00:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:00:30 import omero.model.ImportJobI; 12:00:30 ^ 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 12:00:31 IObject link = (IObject) linkClass.newInstance(); 12:00:31 ^ 12:00:31 where T is a type-variable: 12:00:31 T extends Object declared in class Class 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 12:00:31 T copy = (T) obj.getClass().newInstance(); 12:00:31 ^ 12:00:31 where T is a type-variable: 12:00:31 T extends Object declared in class Class 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:31 RawAccessRequest raw = new RawAccessRequest(); 12:00:31 ^ 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:31 RawAccessRequest raw = new RawAccessRequest(); 12:00:31 ^ 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:00:31 raw.repoUuid = legacy.root().getHash().getValue(); 12:00:31 ^ 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 12:00:31 raw.command = "rm"; 12:00:31 ^ 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 12:00:31 raw.args = Arrays.asList(path); 12:00:31 ^ 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 12:00:31 final IObject link = linkClass.newInstance(); 12:00:31 ^ 12:00:31 where T is a type-variable: 12:00:31 T extends Object declared in class Class 12:00:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 12:00:31 originalLink.setChild(annotationClass.newInstance()); 12:00:31 ^ 12:00:31 where T is a type-variable: 12:00:31 T extends Object declared in class Class 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:00:32 RoiResult r = svc.findByImage(id, new RoiOptions()); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:32 final RawAccessRequest request = new RawAccessRequest(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:32 final RawAccessRequest request = new RawAccessRequest(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:00:32 request.repoUuid = repo.root().getHash().getValue(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 12:00:32 request.command = "exists"; 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 12:00:32 request.args = Collections.singletonList(dirPath); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:32 final RawAccessRequest request = new RawAccessRequest(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:00:32 final RawAccessRequest request = new RawAccessRequest(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:00:32 request.repoUuid = repo.root().getHash().getValue(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 12:00:32 request.command = "exists"; 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 12:00:32 request.args = Collections.singletonList(dirName); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 12:00:32 final ImportJob importJob = new ImportJobI(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:00:32 final ImportJob importJob = new ImportJobI(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 12:00:32 importJob.setImageName(omero.rtypes.rstring(name)); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 12:00:32 importJob.setImageDescription(omero.rtypes.rstring(desc)); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:00:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:00:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:00:32 final String savedName = sent.getImageName().getValue().toString(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:00:32 final String savedDesc = sent.getImageDescription().getValue().toString(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:00:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:00:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:00:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 12:00:32 ^ 12:00:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:00:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 12:00:32 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 RoiResult r = svc.findByImage(image.getId().getValue(), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 12:00:33 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 12:00:33 table = svc.getTable(f.getId().getValue()); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 RoiResult r = svc.findByImage(image.getId().getValue(), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:00:33 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:00:33 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:00:33 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 12:00:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:00:33 svc.getShapeStatsRestricted( 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:00:33 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:00:33 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:00:33 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:00:33 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:00:33 request.typesToIgnore = Collections.singletonList("Annotation"); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:00:33 request.typesToIgnore = Collections.singletonList("Annotation"); 12:00:33 ^ 12:00:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:00:33 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:00:33 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:00:34 p2.setRelatedTo(p1); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:00:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:00:34 pixels1.setRelatedTo(pixels2); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:00:34 Pixels pixels = pixels1.getRelatedTo(); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:00:34 Assert.assertNull(pixels1.getRelatedTo()); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:00:34 pixels1.setRelatedTo(pixels2); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:00:34 Pixels pixels = pixels1.getRelatedTo(); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:00:34 Assert.assertNull(pixels1.getRelatedTo()); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:00:34 ^ 12:00:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:00:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:00:34 ^ 12:00:34 Note: Some input files use unchecked or unsafe operations. 12:00:34 Note: Recompile with -Xlint:unchecked for details. 12:00:34 91 warnings 12:00:34 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1827372765.tmp 12:00:34 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 12:00:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:00:34 :: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-622-6b3a800bcb-ice36-b29 :: integration :: Sat Aug 01 12:00:18 UTC 2026 12:00:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 12:00:34 :: publishing :: omero#OmeroJava-test 12:00:34 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-6b3a800bcb-ice36-b29.jar 12:00:34 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-6b3a800bcb-ice36-b29.xml 12:00:35 12:00:35 build-eclipse: 12:00:35 No sub-builds to iterate on 12:00:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:00:35 12:00:35 retrieve: 12:00:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:00:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:00:40 12:00:40 prepare: 12:00:40 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:00:44 12:00:44 release-clients: 12:00:44 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-6b3a800bcb-ice36-b29.zip 12:00:49 12:00:49 release-zip: 12:00:49 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-6b3a800bcb-ice36-b29.zip 12:01:02 12:01:02 BUILD SUCCESSFUL 12:01:02 Total time: 3 minutes 16 seconds 12:01:02 ++ '[' -d .git ']' 12:01:02 ++ python3 ./build.py release-src 12:01:02 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:01:03 12:01:03 release-src-git: 12:01:03 Releasing openmicroscopy-5.6.3-622-6b3a800bcb-ice36-b29 12:01:04 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-6b3a800bcb-ice36-b29.zip 12:01:04 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-6b3a800bcb-ice36-b29-base.zip 12:01:06 12:01:06 BUILD SUCCESSFUL 12:01:06 Total time: 4 seconds 12:01:06 ++ echo BUILD_NUMBER=29 12:01:06 ++ echo OMERO_BRANCH=merge_ci 12:01:06 ++ git_info 12:01:06 +++ git rev-parse HEAD 12:01:06 ++ HEAD=6b3a800bcba4f892b1229eb8d477e595c95d7aa5 12:01:06 ++ git log --max-count=1 6b3a800bcba4f892b1229eb8d477e595c95d7aa5 12:01:06 ++ env 12:01:06 ++ sort 12:01:06 Archiving artifacts 12:01:24 Finished: SUCCESS