01:10:07 Started by upstream project "Trigger" build number 350 01:10:07 originally caused by: 01:10:07 Started by timer 01:10:07 Running as SYSTEM 01:10:07 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:10:07 The recommended git tool is: NONE 01:10:07 No credentials specified 01:10:07 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:10:07 Fetching changes from the remote Git repository 01:10:07 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:10:07 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:10:07 > git --version # timeout=10 01:10:07 > git --version # 'git version 2.43.5' 01:10:07 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:10:14 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:10:14 Checking out Revision aae3ffa3ee68467ad5bee0ed062d740da9a9ba99 (origin/merge_ci) 01:10:14 > git config core.sparsecheckout # timeout=10 01:10:14 > git checkout -f aae3ffa3ee68467ad5bee0ed062d740da9a9ba99 # timeout=10 01:10:16 Commit message: "Add version.properties to etc/omero.properties" 01:10:16 > git rev-list --no-walk 46d445503ffbcbdf474f22a8410155f8f71d4c36 # timeout=10 01:10:16 Cleaning workspace 01:10:16 > git rev-parse --verify HEAD # timeout=10 01:10:16 Resetting working tree 01:10:16 > git reset --hard # timeout=10 01:10:17 > git clean -fdx # timeout=10 01:10:17 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 295 01:10:17 [OMERO-build] $ /bin/bash -xe /tmp/jenkins12590422421023110325.sh 01:10:17 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 01:10:17 + cd src 01:10:17 + export OMERO_BRANCH=merge_ci 01:10:17 + OMERO_BRANCH=merge_ci 01:10:17 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:10:17 + source /home/omero/settings.env 01:10:17 ++ OMERO_DB_HOST=pg 01:10:17 ++ OMERO_DB_USER=postgres 01:10:17 ++ OMERO_DB_PASS= 01:10:17 ++ OMERO_ROOT_PASS=omero 01:10:17 ++ OMERO_DATA_DIR=/OMERO 01:10:17 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:10:17 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:10:21 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 01:10:23 Collecting zeroc-ice==3.6.5 01:10:23 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 01:10:25 WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. 01:10:25 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:10:26 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 01:10:26 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.8.0) 01:10:27 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6) 01:10:27 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 01:10:27 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 01:10:27 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 01:10:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 01:10:27 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 01:10:27 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 01:10:27 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 01:10:27 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 01:10:27 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 01:10:27 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 01:10:27 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 01:10:27 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 01:10:27 WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. 01:10:27 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:10:27 + source docs/hudson/OMERO.sh 01:10:27 ++ set -e 01:10:27 ++ set -u 01:10:27 ++ set -x 01:10:27 ++ source docs/hudson/functions.sh 01:10:27 ++ echo Building merge_ci 01:10:27 Building merge_ci 01:10:27 ++ python3 ./build.py build-dev release-all 01:10:27 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:10:27 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:10:28 01:10:28 check-ivy: 01:10:28 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:10:28 Created dir: /home/omero/workspace/OMERO-build/src/target 01:10:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:10:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:10:29 01:10:29 build-scons: 01:10:29 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:10:29 No sub-builds to iterate on 01:10:29 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:10:29 01:10:29 buildlist: 01:10:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:10:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:10:29 01:10:29 clean: 01:10:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:10:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:10:29 01:10:29 python-clean: 01:10:29 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:10:30 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-aae3ffa3ee-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:10:30 warnings.warn( 01:10:30 running clean 01:10:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:10:30 01:10:30 python-clean: 01:10:30 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:10:30 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-aae3ffa3ee-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:10:30 warnings.warn( 01:10:30 running clean 01:10:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:10:30 01:10:30 python-clean: 01:10:30 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:10:30 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-aae3ffa3ee-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:10:30 warnings.warn( 01:10:30 running clean 01:10:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:10:30 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:10:30 01:10:30 build-scons: 01:10:30 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:10:30 01:10:30 build: 01:10:30 No sub-builds to iterate on 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:10:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:10:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:10:31 01:10:31 tools-init: 01:10:31 no-op 01:10:31 01:10:31 retrieve: 01:10:31 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:10:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:10:32 WARNING: An illegal reflective access operation has occurred 01:10:32 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 01:10:32 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 01:10:32 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 01:10:32 WARNING: All illegal access operations will be denied in a future release 01:10:54 01:10:54 prepare: 01:10:54 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:10:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:10:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:10:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:10:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:10:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:10:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:10:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:10:54 01:10:54 pre-compile: 01:10:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:10:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:10:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:10:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:10:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:10:55 01:10:55 compile: 01:10:55 no-op 01:10:55 01:10:55 package: 01:10:55 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:10:55 01:10:55 install: 01:10:55 :: delivering :: omero#omero_client;working@78531952a60e :: 5.6.3-531-aae3ffa3ee-ice36 :: integration :: Fri Jan 24 01:10:30 UTC 2025 01:10:55 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:10:55 :: publishing :: omero#omero_client 01:10:55 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-531-aae3ffa3ee-ice36/omero_client-5.6.3-531-aae3ffa3ee-ice36.jar 01:10:55 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-531-aae3ffa3ee-ice36/omero_client-5.6.3-531-aae3ffa3ee-ice36.xml 01:10:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:10:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:10:56 01:10:56 retrieve: 01:10:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:10:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:10:56 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:10:56 01:10:56 dist: 01:10:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:10:56 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:10:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:10:56 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:10:56 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:10:56 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:10:56 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:10:56 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:10:56 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:10:56 01:10:56 copy-licenses: 01:10:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:10:56 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:10:56 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:10:56 01:10:56 copy-history: 01:10:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:10:56 01:10:56 copy-etc: 01:10:56 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:10:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:10:56 01:10:56 copy-sql: 01:10:56 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:11:04 01:11:04 copy-server: 01:11:04 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 01:11:04 01:11:04 copy-client: 01:11:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:11:06 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 01:11:06 01:11:06 update-version: 01:11:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:11:06 01:11:06 create-workdirs: 01:11:06 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:11:06 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:11:06 01:11:06 copy-luts: 01:11:06 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:11:06 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:11:06 01:11:06 test-compile: 01:11:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:11:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:11:06 01:11:06 testng-init: 01:11:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:11:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:11:10 01:11:10,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 01:11:10 01:11:10,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - No custom configurators were discovered as a service. 01:11:10 01:11:10,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:11:10 01:11:10,573 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:11:10 01:11:10,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:11:10 01:11:10,574 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:11:10 01:11:10,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:11:10 01:11:10,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:11:10 01:11:10,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:11:10 01:11:10,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:11:10 01:11:10,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:11:10 01:11:10,578 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2ea6687b - Resource [logback.xml] occurs multiple times on the classpath. 01:11:10 01:11:10,578 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2ea6687b - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:11:10 01:11:10,578 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2ea6687b - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:11:10 01:11:10,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:11:10 01:11:10,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:11:10 01:11:10,856 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:11:10 01:11:10,858 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5fdd9b96 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:11:10 01:11:10,858 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5fdd9b96 - Please move "immediateFlush" property into the enclosing appender. 01:11:10 01:11:10,921 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5fdd9b96 - Setting the "immediateFlush" property of the enclosing appender to true 01:11:10 01:11:10,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:11:10 01:11:10,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:11:10 01:11:10,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:11:10 01:11:10,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:11:10 01:11:10,922 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:11:10 01:11:10,922 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:11:10 01:11:10,923 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@50ed6392 - End of configuration. 01:11:10 01:11:10,926 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5ee29735 - Registering current configuration as safe fallback point 01:11:10 01:11:10,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@70bfc7d5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 350 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:11:10 01:11:10 lifecycle.test-compile: 01:11:10 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:11:10 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:11:11 warning: [options] bootstrap class path not set in conjunction with -source 8 01:11:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:12 import omero.grid.RawAccessRequest; 01:11:12 ^ 01:11:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:13 import omero.grid.RawAccessRequest; 01:11:13 ^ 01:11:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:13 import omero.grid.RawAccessRequest; 01:11:13 ^ 01:11:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:11:13 import omero.model.ImportJob; 01:11:13 ^ 01:11:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:11:13 import omero.model.ImportJobI; 01:11:13 ^ 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:11:14 IObject link = (IObject) linkClass.newInstance(); 01:11:14 ^ 01:11:14 where T is a type-variable: 01:11:14 T extends Object declared in class Class 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:11:14 T copy = (T) obj.getClass().newInstance(); 01:11:14 ^ 01:11:14 where T is a type-variable: 01:11:14 T extends Object declared in class Class 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:14 RawAccessRequest raw = new RawAccessRequest(); 01:11:14 ^ 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:14 RawAccessRequest raw = new RawAccessRequest(); 01:11:14 ^ 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:11:14 raw.repoUuid = legacy.root().getHash().getValue(); 01:11:14 ^ 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:11:14 raw.command = "rm"; 01:11:14 ^ 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:11:14 raw.args = Arrays.asList(path); 01:11:14 ^ 01:11:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:11:14 final IObject link = linkClass.newInstance(); 01:11:14 ^ 01:11:14 where T is a type-variable: 01:11:14 T extends Object declared in class Class 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:11:15 originalLink.setChild(annotationClass.newInstance()); 01:11:15 ^ 01:11:15 where T is a type-variable: 01:11:15 T extends Object declared in class Class 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:11:15 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:15 final RawAccessRequest request = new RawAccessRequest(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:15 final RawAccessRequest request = new RawAccessRequest(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:11:15 request.repoUuid = repo.root().getHash().getValue(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:11:15 request.command = "exists"; 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:11:15 request.args = Collections.singletonList(dirPath); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:15 final RawAccessRequest request = new RawAccessRequest(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:11:15 final RawAccessRequest request = new RawAccessRequest(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:11:15 request.repoUuid = repo.root().getHash().getValue(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:11:15 request.command = "exists"; 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:11:15 request.args = Collections.singletonList(dirName); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:11:15 final ImportJob importJob = new ImportJobI(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:11:15 final ImportJob importJob = new ImportJobI(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:11:15 importJob.setImageName(omero.rtypes.rstring(name)); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:11:15 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:11:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:11:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:11:15 final String savedName = sent.getImageName().getValue().toString(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:11:15 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:11:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:11:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:11:15 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:11:15 ^ 01:11:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:11:15 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:11:15 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 RoiResult r = svc.findByImage(image.getId().getValue(), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:11:16 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:11:16 table = svc.getTable(f.getId().getValue()); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 RoiResult r = svc.findByImage(image.getId().getValue(), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:11:16 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:11:16 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:11:16 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 01:11:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:11:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:11:16 svc.getShapeStatsRestricted( 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:11:16 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:11:16 ^ 01:11:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:11:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:11:16 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:11:17 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:11:17 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:11:17 request.typesToIgnore = Collections.singletonList("Annotation"); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:11:17 request.typesToIgnore = Collections.singletonList("Annotation"); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:11:17 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:11:17 p2.setRelatedTo(p1); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:11:17 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:11:17 pixels1.setRelatedTo(pixels2); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:11:17 Pixels pixels = pixels1.getRelatedTo(); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:11:17 Assert.assertNull(pixels1.getRelatedTo()); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:11:17 pixels1.setRelatedTo(pixels2); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:11:17 Pixels pixels = pixels1.getRelatedTo(); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:11:17 Assert.assertNull(pixels1.getRelatedTo()); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:11:17 ^ 01:11:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:11:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:11:17 ^ 01:11:17 Note: Some input files use unchecked or unsafe operations. 01:11:17 Note: Recompile with -Xlint:unchecked for details. 01:11:17 88 warnings 01:11:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1145928095.tmp 01:11:17 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:11:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:11:17 :: delivering :: omero#OmeroJava-test;working@78531952a60e :: 5.6.3-531-aae3ffa3ee-ice36 :: integration :: Fri Jan 24 01:11:06 UTC 2025 01:11:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:11:17 :: publishing :: omero#OmeroJava-test 01:11:17 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-531-aae3ffa3ee-ice36.jar 01:11:17 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-531-aae3ffa3ee-ice36.xml 01:11:17 01:11:17 build-eclipse: 01:11:17 No sub-builds to iterate on 01:11:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:11:17 01:11:17 retrieve: 01:11:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:11:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:11:20 01:11:20 prepare: 01:11:20 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:11:22 01:11:22 release-clients: 01:11:22 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-531-aae3ffa3ee-ice36.zip 01:11:28 01:11:28 release-zip: 01:11:28 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-531-aae3ffa3ee-ice36.zip 01:11:40 01:11:40 BUILD SUCCESSFUL 01:11:40 Total time: 1 minute 12 seconds 01:11:40 ++ '[' -d .git ']' 01:11:40 ++ python3 ./build.py release-src 01:11:40 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:11:40 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:11:41 01:11:41 release-src-git: 01:11:41 Releasing openmicroscopy-5.6.3-531-aae3ffa3ee-ice36 01:11:42 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-531-aae3ffa3ee-ice36.zip 01:11:42 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-531-aae3ffa3ee-ice36-base.zip 01:11:44 01:11:44 BUILD SUCCESSFUL 01:11:44 Total time: 3 seconds 01:11:44 ++ echo BUILD_NUMBER=299 01:11:44 ++ echo OMERO_BRANCH=merge_ci 01:11:44 ++ git_info 01:11:44 +++ git rev-parse HEAD 01:11:44 ++ HEAD=aae3ffa3ee68467ad5bee0ed062d740da9a9ba99 01:11:44 ++ git log --max-count=1 aae3ffa3ee68467ad5bee0ed062d740da9a9ba99 01:11:44 ++ env 01:11:44 ++ sort 01:11:44 Archiving artifacts 01:12:14 Finished: SUCCESS