11:46:33 Started by upstream project "Trigger" build number 54 11:46:33 originally caused by: 11:46:33 Started by user devspace 11:46:33 Restarted from build #53, stage OMERO Distribution 11:46:33 Running as SYSTEM 11:46:33 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 11:46:33 The recommended git tool is: NONE 11:46:33 No credentials specified 11:46:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 11:46:33 Fetching changes from the remote Git repository 11:46:33 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 11:46:33 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 11:46:33 > git --version # timeout=10 11:46:33 > git --version # 'git version 2.47.3' 11:46:33 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:46:33 > git rev-parse origin/merge_ci^{commit} # timeout=10 11:46:33 Checking out Revision ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c (origin/merge_ci) 11:46:33 > git config core.sparsecheckout # timeout=10 11:46:33 > git checkout -f ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c # timeout=10 11:46:33 Commit message: "Add version.properties to etc/omero.properties" 11:46:33 > git rev-list --no-walk e85749924e415997e3b44cb7dce742ebbe048cc8 # timeout=10 11:46:33 Cleaning workspace 11:46:33 > git rev-parse --verify HEAD # timeout=10 11:46:33 Resetting working tree 11:46:33 > git reset --hard # timeout=10 11:46:33 > git clean -fdx # timeout=10 11:46:34 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 27 11:46:34 [OMERO-build] $ /bin/bash -xe /tmp/jenkins10037840970778972223.sh 11:46:34 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 11:46:34 + cd src 11:46:34 + export OMERO_BRANCH=merge_ci 11:46:34 + OMERO_BRANCH=merge_ci 11:46:34 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 11:46:34 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 11:46:34 + source /home/omero/settings.env 11:46:34 ++ OMERO_DB_HOST=pg 11:46:34 ++ OMERO_DB_USER=postgres 11:46:34 ++ OMERO_DB_PASS= 11:46:34 ++ OMERO_ROOT_PASS=omero 11:46:34 ++ OMERO_DATA_DIR=/OMERO 11:46:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:46:34 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 11:46:37 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 11:46:38 Collecting zeroc-ice==3.6.5 11:46:38 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 11:46:41 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 4.8 MB/s eta 0:00:00 11:46:42 Installing collected packages: zeroc-ice 11:46:42 Successfully installed zeroc-ice-3.6.5 11:46:42 11:46:42 [notice] A new release of pip available: 22.3.1 -> 25.3 11:46:42 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:46:42 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 11:46:43 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 11:46:43 Collecting setuptools<66 11:46:43 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 11:46:43 Collecting omero-py 11:46:43 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 11:46:43 Collecting appdirs 11:46:43 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:46:43 Collecting future 11:46:43 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:46:44 Collecting numpy<3 11:46:44 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB) 11:46:44 Collecting Pillow>=10.0.0 11:46:44 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 11:46:45 Collecting PyYAML 11:46:45 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 11:46:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 11:46:45 Collecting requests 11:46:45 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 11:46:45 Collecting portalocker 11:46:45 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 11:46:45 Collecting charset_normalizer<4,>=2 11:46:45 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 11:46:45 Collecting idna<4,>=2.5 11:46:45 Using cached idna-3.11-py3-none-any.whl (71 kB) 11:46:45 Collecting urllib3<3,>=1.21.1 11:46:45 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB) 11:46:45 Collecting certifi>=2017.4.17 11:46:45 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 11:46:45 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 11:46:45 Attempting uninstall: setuptools 11:46:45 Found existing installation: setuptools 65.5.1 11:46:45 Uninstalling setuptools-65.5.1: 11:46:45 Successfully uninstalled setuptools-65.5.1 11:46:51 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3 11:46:51 11:46:51 [notice] A new release of pip available: 22.3.1 -> 25.3 11:46:51 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:46:51 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 11:46:51 ++ deactivate nondestructive 11:46:51 ++ '[' -n '' ']' 11:46:51 ++ '[' -n '' ']' 11:46:51 ++ hash -r 11:46:51 ++ '[' -n '' ']' 11:46:51 ++ unset VIRTUAL_ENV 11:46:51 ++ unset VIRTUAL_ENV_PROMPT 11:46:51 ++ '[' '!' nondestructive = nondestructive ']' 11:46:51 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 11:46:51 ++ export VIRTUAL_ENV 11:46:51 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:46:51 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:46:51 ++ export PATH 11:46:51 ++ '[' -n '' ']' 11:46:51 ++ '[' -z '' ']' 11:46:51 ++ _OLD_VIRTUAL_PS1= 11:46:51 ++ PS1='(omero-virtualenv) ' 11:46:51 ++ export PS1 11:46:51 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 11:46:51 ++ export VIRTUAL_ENV_PROMPT 11:46:51 ++ hash -r 11:46:51 + source docs/hudson/OMERO.sh 11:46:51 ++ set -e 11:46:51 ++ set -u 11:46:51 ++ set -x 11:46:51 ++ source docs/hudson/functions.sh 11:46:51 ++ echo Building merge_ci 11:46:51 Building merge_ci 11:46:51 ++ python3 ./build.py build-dev release-all 11:46:51 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:46:51 11:46:51 check-ivy: 11:46:51 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 11:46:51 Created dir: /home/omero/workspace/OMERO-build/src/target 11:46:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:52 11:46:52 build-scons: 11:46:52 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:46:52 No sub-builds to iterate on 11:46:52 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:46:52 11:46:52 buildlist: 11:46:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:53 11:46:53 clean: 11:46:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:53 11:46:53 python-clean: 11:46:53 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:46:53 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-ad2ef7b5d8-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:46:53 warnings.warn( 11:46:53 running clean 11:46:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 11:46:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:46:53 11:46:53 python-clean: 11:46:53 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:46:53 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-ad2ef7b5d8-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:46:53 warnings.warn( 11:46:53 running clean 11:46:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 11:46:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:46:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:54 11:46:54 python-clean: 11:46:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:46:54 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-ad2ef7b5d8-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:46:54 warnings.warn( 11:46:54 running clean 11:46:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 11:46:54 Deleting directory /home/omero/workspace/OMERO-build/src/target 11:46:54 11:46:54 build-scons: 11:46:54 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:46:54 11:46:54 build: 11:46:54 No sub-builds to iterate on 11:46:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:46:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:46:54 11:46:54 tools-init: 11:46:54 no-op 11:46:54 11:46:54 retrieve: 11:46:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:47:37 11:47:37 prepare: 11:47:37 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:47:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 11:47:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 11:47:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:47:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:47:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:47:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:47:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:47:37 11:47:37 pre-compile: 11:47:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:47:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:47:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:47:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:47:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:47:37 11:47:37 compile: 11:47:37 no-op 11:47:38 11:47:38 package: 11:47:38 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 11:47:38 11:47:38 install: 11:47:38 :: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-586-ad2ef7b5d8-ice36-b31 :: integration :: Fri Jan 23 11:46:54 UTC 2026 11:47:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 11:47:38 :: publishing :: omero#omero_client 11:47:38 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-586-ad2ef7b5d8-ice36-b31/omero_client-5.6.3-586-ad2ef7b5d8-ice36-b31.jar 11:47:38 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-586-ad2ef7b5d8-ice36-b31/omero_client-5.6.3-586-ad2ef7b5d8-ice36-b31.xml 11:47:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:47:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:47:38 11:47:38 retrieve: 11:47:38 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:47:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:47:39 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:47:39 11:47:39 dist: 11:47:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 11:47:39 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 11:47:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:47:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:47:39 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 11:47:39 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 11:47:39 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 11:47:39 Entering /home/omero/workspace/OMERO-build/src/components/tests... 11:47:39 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:47:39 11:47:39 copy-licenses: 11:47:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:47:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 11:47:39 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 11:47:39 11:47:39 copy-history: 11:47:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:47:39 11:47:39 copy-etc: 11:47:39 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 11:47:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 11:47:39 11:47:39 copy-sql: 11:47:39 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 11:47:44 11:47:44 copy-server: 11:47:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 11:47:44 11:47:44 copy-client: 11:47:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 11:47:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 11:47:46 11:47:46 update-version: 11:47:46 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 11:47:46 11:47:46 create-workdirs: 11:47:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 11:47:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 11:47:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 11:47:46 11:47:46 copy-luts: 11:47:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:47:46 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:47:46 11:47:46 test-compile: 11:47:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:47:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:47:46 11:47:46 testng-init: 11:47:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:47:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:47:49 11:47:48,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 11:47:49 11:47:48,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - No custom configurators were discovered as a service. 11:47:49 11:47:48,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 11:47:49 11:47:48,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 11:47:49 11:47:48,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 11:47:49 11:47:48,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 11:47:49 11:47:48,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 11:47:49 11:47:48,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 11:47:49 11:47:48,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 11:47:49 11:47:48,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 11:47:49 11:47:48,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:47:49 11:47:48,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs multiple times on the classpath. 11:47:49 11:47:48,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:47:49 11:47:48,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 11:47:49 11:47:49,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 11:47:49 11:47:49,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 11:47:49 11:47:49,190 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 11:47:49 11:47:49,192 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 11:47:49 11:47:49,192 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Please move "immediateFlush" property into the enclosing appender. 11:47:49 11:47:49,247 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Setting the "immediateFlush" property of the enclosing appender to true 11:47:49 11:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 11:47:49 11:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 11:47:49 11:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 11:47:49 11:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 11:47:49 11:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 11:47:49 11:47:49,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 11:47:49 11:47:49,249 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@160b010e - End of configuration. 11:47:49 11:47:49,251 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@742b91a5 - Registering current configuration as safe fallback point 11:47:49 11:47:49,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 271 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 11:47:49 11:47:49 lifecycle.test-compile: 11:47:49 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:47:49 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:47:49 warning: [options] bootstrap class path not set in conjunction with -source 8 11:47:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:50 import omero.grid.RawAccessRequest; 11:47:50 ^ 11:47:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:50 import omero.grid.RawAccessRequest; 11:47:50 ^ 11:47:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:51 import omero.grid.RawAccessRequest; 11:47:51 ^ 11:47:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 11:47:51 import omero.model.ImportJob; 11:47:51 ^ 11:47:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:47:51 import omero.model.ImportJobI; 11:47:51 ^ 11:47:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 11:47:51 IObject link = (IObject) linkClass.newInstance(); 11:47:51 ^ 11:47:51 where T is a type-variable: 11:47:51 T extends Object declared in class Class 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 11:47:52 T copy = (T) obj.getClass().newInstance(); 11:47:52 ^ 11:47:52 where T is a type-variable: 11:47:52 T extends Object declared in class Class 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:52 RawAccessRequest raw = new RawAccessRequest(); 11:47:52 ^ 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:52 RawAccessRequest raw = new RawAccessRequest(); 11:47:52 ^ 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:47:52 raw.repoUuid = legacy.root().getHash().getValue(); 11:47:52 ^ 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 11:47:52 raw.command = "rm"; 11:47:52 ^ 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 11:47:52 raw.args = Arrays.asList(path); 11:47:52 ^ 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 11:47:52 final IObject link = linkClass.newInstance(); 11:47:52 ^ 11:47:52 where T is a type-variable: 11:47:52 T extends Object declared in class Class 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 11:47:52 originalLink.setChild(annotationClass.newInstance()); 11:47:52 ^ 11:47:52 where T is a type-variable: 11:47:52 T extends Object declared in class Class 11:47:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:47:52 RoiResult r = svc.findByImage(id, new RoiOptions()); 11:47:52 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:53 final RawAccessRequest request = new RawAccessRequest(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:53 final RawAccessRequest request = new RawAccessRequest(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:47:53 request.repoUuid = repo.root().getHash().getValue(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 11:47:53 request.command = "exists"; 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 11:47:53 request.args = Collections.singletonList(dirPath); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:53 final RawAccessRequest request = new RawAccessRequest(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:47:53 final RawAccessRequest request = new RawAccessRequest(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:47:53 request.repoUuid = repo.root().getHash().getValue(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 11:47:53 request.command = "exists"; 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 11:47:53 request.args = Collections.singletonList(dirName); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 11:47:53 final ImportJob importJob = new ImportJobI(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:47:53 final ImportJob importJob = new ImportJobI(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 11:47:53 importJob.setImageName(omero.rtypes.rstring(name)); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 11:47:53 importJob.setImageDescription(omero.rtypes.rstring(desc)); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:47:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:47:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:47:53 final String savedName = sent.getImageName().getValue().toString(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:47:53 final String savedDesc = sent.getImageDescription().getValue().toString(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:47:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:47:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:47:53 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:47:53 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 RoiResult r = svc.findByImage(image.getId().getValue(), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 11:47:53 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 11:47:53 table = svc.getTable(f.getId().getValue()); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 RoiResult r = svc.findByImage(image.getId().getValue(), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:47:53 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:47:53 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:47:53 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 11:47:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:47:53 svc.getShapeStatsRestricted( 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:47:53 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:47:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:47:53 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:47:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:47:53 request.typesToIgnore = Collections.singletonList("Annotation"); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:47:53 request.typesToIgnore = Collections.singletonList("Annotation"); 11:47:53 ^ 11:47:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:47:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:47:53 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:47:54 p2.setRelatedTo(p1); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:47:54 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:47:54 pixels1.setRelatedTo(pixels2); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:47:54 Pixels pixels = pixels1.getRelatedTo(); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:47:54 Assert.assertNull(pixels1.getRelatedTo()); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:47:54 pixels1.setRelatedTo(pixels2); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:47:54 Pixels pixels = pixels1.getRelatedTo(); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:47:54 Assert.assertNull(pixels1.getRelatedTo()); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:54 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:47:54 ^ 11:47:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:47:54 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:47:54 ^ 11:47:54 Note: Some input files use unchecked or unsafe operations. 11:47:54 Note: Recompile with -Xlint:unchecked for details. 11:47:54 88 warnings 11:47:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_674108212.tmp 11:47:54 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 11:47:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:47:54 :: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-586-ad2ef7b5d8-ice36-b31 :: integration :: Fri Jan 23 11:47:46 UTC 2026 11:47:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 11:47:54 :: publishing :: omero#OmeroJava-test 11:47:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-586-ad2ef7b5d8-ice36-b31.jar 11:47:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-586-ad2ef7b5d8-ice36-b31.xml 11:47:54 11:47:54 build-eclipse: 11:47:54 No sub-builds to iterate on 11:47:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:47:54 11:47:54 retrieve: 11:47:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:47:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:47:56 11:47:56 prepare: 11:47:56 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:47:57 11:47:57 release-clients: 11:47:57 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-586-ad2ef7b5d8-ice36-b31.zip 11:48:02 11:48:02 release-zip: 11:48:02 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-586-ad2ef7b5d8-ice36-b31.zip 11:48:13 11:48:13 BUILD SUCCESSFUL 11:48:13 Total time: 1 minute 21 seconds 11:48:13 ++ '[' -d .git ']' 11:48:13 ++ python3 ./build.py release-src 11:48:13 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:48:13 11:48:13 release-src-git: 11:48:13 Releasing openmicroscopy-5.6.3-586-ad2ef7b5d8-ice36-b31 11:48:15 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-586-ad2ef7b5d8-ice36-b31.zip 11:48:15 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-586-ad2ef7b5d8-ice36-b31-base.zip 11:48:16 11:48:16 BUILD SUCCESSFUL 11:48:16 Total time: 3 seconds 11:48:16 ++ echo BUILD_NUMBER=31 11:48:16 ++ echo OMERO_BRANCH=merge_ci 11:48:16 ++ git_info 11:48:16 +++ git rev-parse HEAD 11:48:16 ++ HEAD=ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c 11:48:16 ++ git log --max-count=1 ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c 11:48:16 ++ env 11:48:16 ++ sort 11:48:16 Archiving artifacts 11:48:33 Finished: SUCCESS