01:17:50 Started by upstream project "Trigger" build number 43 01:17:50 originally caused by: 01:17:50 Started by timer 01:17:50 Running as SYSTEM 01:17:50 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:17:50 The recommended git tool is: NONE 01:17:50 No credentials specified 01:17:50 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:17:50 Fetching changes from the remote Git repository 01:17:50 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:17:50 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:17:50 > git --version # timeout=10 01:17:50 > git --version # 'git version 2.52.0' 01:17:50 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:17:54 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:17:54 Checking out Revision b4465394cd49c4f41d0e771d45a28b163bc891cb (origin/merge_ci) 01:17:54 > git config core.sparsecheckout # timeout=10 01:17:54 > git checkout -f b4465394cd49c4f41d0e771d45a28b163bc891cb # timeout=10 01:17:57 Commit message: "Add version.properties to etc/omero.properties" 01:17:57 > git rev-list --no-walk 9dcf70e17eb693df3a032f408d3a57fd1a216841 # timeout=10 01:17:57 Cleaning workspace 01:17:57 > git rev-parse --verify HEAD # timeout=10 01:17:57 Resetting working tree 01:17:57 > git reset --hard # timeout=10 01:17:57 > git clean -fdx # timeout=10 01:18:29 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 28 01:18:30 [OMERO-build] $ /bin/bash -xe /tmp/jenkins16069354834863716446.sh 01:18:30 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 01:18:30 + cd src 01:18:30 + export OMERO_BRANCH=merge_ci 01:18:30 + OMERO_BRANCH=merge_ci 01:18:30 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:18:30 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 01:18:59 + source /home/omero/settings.env 01:18:59 ++ OMERO_DB_HOST=pg 01:18:59 ++ OMERO_DB_USER=postgres 01:18:59 ++ OMERO_DB_PASS= 01:18:59 ++ OMERO_ROOT_PASS=omero 01:18:59 ++ OMERO_DATA_DIR=/OMERO 01:18:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:18:59 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:19:23 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:19:24 Collecting zeroc-ice==3.6.5 01:19:24 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:19:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.0 MB/s eta 0:00:00 01:19:27 Installing collected packages: zeroc-ice 01:19:32 Successfully installed zeroc-ice-3.6.5 01:19:32 01:19:32 [notice] A new release of pip available: 22.3.1 -> 26.2 01:19:32 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:19:32 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 01:19:33 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 01:19:33 Collecting setuptools<66 01:19:33 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 01:19:33 Collecting omero-py 01:19:33 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 01:19:34 Collecting appdirs 01:19:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:19:34 Collecting future 01:19:34 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:19:34 Collecting numpy<3,>=2 01:19:34 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:19:35 Collecting Pillow>=10.0.0 01:19:35 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:19:35 Collecting PyYAML 01:19:35 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:19:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:19:36 Collecting requests 01:19:36 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:19:36 Collecting portalocker 01:19:36 Downloading portalocker-4.1.0-py3-none-any.whl (65 kB) 01:19:36 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.9/65.9 kB 1.3 MB/s eta 0:00:00 01:19:36 Collecting charset_normalizer<4,>=2 01:19:36 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 01:19:36 Collecting idna<4,>=2.5 01:19:36 Using cached idna-3.18-py3-none-any.whl (65 kB) 01:19:37 Collecting urllib3<3,>=1.26 01:19:37 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:19:37 Collecting certifi>=2023.5.7 01:19:37 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 01:19:37 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 01:19:39 Attempting uninstall: setuptools 01:19:39 Found existing installation: setuptools 65.5.1 01:19:39 Uninstalling setuptools-65.5.1: 01:19:40 Successfully uninstalled setuptools-65.5.1 01:20:43 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 01:20:43 01:20:43 [notice] A new release of pip available: 22.3.1 -> 26.2 01:20:43 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:20:43 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 01:20:43 ++ deactivate nondestructive 01:20:43 ++ '[' -n '' ']' 01:20:43 ++ '[' -n '' ']' 01:20:43 ++ hash -r 01:20:43 ++ '[' -n '' ']' 01:20:43 ++ unset VIRTUAL_ENV 01:20:43 ++ unset VIRTUAL_ENV_PROMPT 01:20:43 ++ '[' '!' nondestructive = nondestructive ']' 01:20:43 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 01:20:43 ++ export VIRTUAL_ENV 01:20:43 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:20:43 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:20:43 ++ export PATH 01:20:43 ++ '[' -n '' ']' 01:20:43 ++ '[' -z '' ']' 01:20:43 ++ _OLD_VIRTUAL_PS1= 01:20:43 ++ PS1='(omero-virtualenv) ' 01:20:43 ++ export PS1 01:20:43 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 01:20:43 ++ export VIRTUAL_ENV_PROMPT 01:20:43 ++ hash -r 01:20:43 + source docs/hudson/OMERO.sh 01:20:43 ++ set -e 01:20:43 ++ set -u 01:20:43 ++ set -x 01:20:43 ++ source docs/hudson/functions.sh 01:20:43 ++ echo Building merge_ci 01:20:43 Building merge_ci 01:20:43 ++ python3 ./build.py build-dev release-all 01:20:44 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:20:45 01:20:45 check-ivy: 01:20:45 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:20:45 Created dir: /home/omero/workspace/OMERO-build/src/target 01:20:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:20:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:20:47 01:20:47 build-scons: 01:20:47 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:20:49 No sub-builds to iterate on 01:20:49 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:20:50 01:20:50 buildlist: 01:20:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:20:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:20:50 01:20:50 clean: 01:20:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:20:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:20:51 01:20:51 python-clean: 01:20:51 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:20:51 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-b4465394cd-ice36-b32') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:20:51 warnings.warn( 01:20:51 running clean 01:20:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:20:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:20:52 01:20:52 python-clean: 01:20:52 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:20:52 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-b4465394cd-ice36-b32') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:20:52 warnings.warn( 01:20:52 running clean 01:20:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:20:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:20:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:20:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:20:54 01:20:54 python-clean: 01:20:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:20:54 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-b4465394cd-ice36-b32') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:20:54 warnings.warn( 01:20:54 running clean 01:20:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:20:54 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:20:55 01:20:55 build-scons: 01:20:55 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:20:57 01:20:57 build: 01:20:57 No sub-builds to iterate on 01:20:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:20:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:20:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:20:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:20:59 01:20:59 tools-init: 01:20:59 no-op 01:20:59 01:20:59 retrieve: 01:20:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:20:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:22:21 01:22:21 prepare: 01:22:21 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:22:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:22:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:22:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:22:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:22:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:22:21 01:22:21 pre-compile: 01:22:21 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:23 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:22:41 01:22:41 compile: 01:22:41 no-op 01:22:42 01:22:42 package: 01:22:42 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:22:46 01:22:46 install: 01:22:46 :: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-624-b4465394cd-ice36-b32 :: integration :: Mon Aug 03 01:20:58 UTC 2026 01:22:46 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:22:46 :: publishing :: omero#omero_client 01:22:46 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-624-b4465394cd-ice36-b32/omero_client-5.6.3-624-b4465394cd-ice36-b32.jar 01:22:46 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-624-b4465394cd-ice36-b32/omero_client-5.6.3-624-b4465394cd-ice36-b32.xml 01:22:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:22:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:22:47 01:22:47 retrieve: 01:22:47 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:22:47 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:22:48 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:22:48 01:22:48 dist: 01:22:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:22:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:22:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:22:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:22:49 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:22:49 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:22:49 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:22:50 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:22:50 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:22:51 01:22:51 copy-licenses: 01:22:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:22:51 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:22:51 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:22:52 01:22:52 copy-history: 01:22:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:22:52 01:22:52 copy-etc: 01:22:52 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:22:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:22:53 01:22:53 copy-sql: 01:22:53 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:23:05 01:23:05 copy-server: 01:23:05 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 01:23:10 01:23:10 copy-client: 01:23:10 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:23:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 01:23:19 01:23:19 update-version: 01:23:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:23:19 01:23:19 create-workdirs: 01:23:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:23:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:23:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 01:23:19 01:23:19 copy-luts: 01:23:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:23:19 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:23:20 01:23:20 test-compile: 01:23:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:23:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:22 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:23:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:23:22 01:23:22 testng-init: 01:23:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:31 01:23:31,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 01:23:31 01:23:31,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 01:23:31 01:23:31,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:23:31 01:23:31,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:23:31 01:23:31,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:23:31 01:23:31,096 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:23:31 01:23:31,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:23:31 01:23:31,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:23:31 01:23:31,099 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:23:31 01:23:31,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:23:31 01:23:31,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:23:31 01:23:31,105 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 01:23:31 01:23:31,105 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:23:31 01:23:31,105 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:23:31 01:23:31,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:23:31 01:23:31,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:23:31 01:23:31,360 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:23:31 01:23:31,363 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:23:31 01:23:31,363 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 01:23:31 01:23:31,437 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 01:23:31 01:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:23:31 01:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:23:31 01:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:23:31 01:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:23:31 01:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:23:31 01:23:31,438 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:23:31 01:23:31,440 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 01:23:31 01:23:31,442 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 01:23:31 01:23:31,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:23:31 01:23:31 lifecycle.test-compile: 01:23:31 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:23:31 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:23:31 warning: [options] bootstrap class path not set in conjunction with -source 8 01:23:31 warning: [options] source value 8 is obsolete and will be removed in a future release 01:23:31 warning: [options] target value 8 is obsolete and will be removed in a future release 01:23:31 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 01:23:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:33 import omero.grid.RawAccessRequest; 01:23:33 ^ 01:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:34 import omero.grid.RawAccessRequest; 01:23:34 ^ 01:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:34 import omero.grid.RawAccessRequest; 01:23:34 ^ 01:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:34 import omero.model.ImportJob; 01:23:34 ^ 01:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:23:34 import omero.model.ImportJobI; 01:23:34 ^ 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:23:35 IObject link = (IObject) linkClass.newInstance(); 01:23:35 ^ 01:23:35 where T is a type-variable: 01:23:35 T extends Object declared in class Class 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:23:35 T copy = (T) obj.getClass().newInstance(); 01:23:35 ^ 01:23:35 where T is a type-variable: 01:23:35 T extends Object declared in class Class 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:35 RawAccessRequest raw = new RawAccessRequest(); 01:23:35 ^ 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:35 RawAccessRequest raw = new RawAccessRequest(); 01:23:35 ^ 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:23:35 raw.repoUuid = legacy.root().getHash().getValue(); 01:23:35 ^ 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:23:35 raw.command = "rm"; 01:23:35 ^ 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:23:35 raw.args = Arrays.asList(path); 01:23:35 ^ 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:23:35 final IObject link = linkClass.newInstance(); 01:23:35 ^ 01:23:35 where T is a type-variable: 01:23:35 T extends Object declared in class Class 01:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:23:35 originalLink.setChild(annotationClass.newInstance()); 01:23:35 ^ 01:23:35 where T is a type-variable: 01:23:35 T extends Object declared in class Class 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:23:36 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:36 final RawAccessRequest request = new RawAccessRequest(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:36 final RawAccessRequest request = new RawAccessRequest(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:23:36 request.repoUuid = repo.root().getHash().getValue(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:23:36 request.command = "exists"; 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:23:36 request.args = Collections.singletonList(dirPath); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:36 final RawAccessRequest request = new RawAccessRequest(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:23:36 final RawAccessRequest request = new RawAccessRequest(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:23:36 request.repoUuid = repo.root().getHash().getValue(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:23:36 request.command = "exists"; 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:23:36 request.args = Collections.singletonList(dirName); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:36 final ImportJob importJob = new ImportJobI(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:23:36 final ImportJob importJob = new ImportJobI(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:23:36 importJob.setImageName(omero.rtypes.rstring(name)); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:23:36 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:23:36 final String savedName = sent.getImageName().getValue().toString(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:23:36 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:23:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:23:36 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:23:36 ^ 01:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:23:36 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:23:36 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 RoiResult r = svc.findByImage(image.getId().getValue(), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:23:37 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:23:37 table = svc.getTable(f.getId().getValue()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 RoiResult r = svc.findByImage(image.getId().getValue(), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:23:37 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:23:37 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:23:37 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 01:23:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:23:37 svc.getShapeStatsRestricted( 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:23:37 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:37 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:37 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:37 request.typesToIgnore = Collections.singletonList("Annotation"); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:23:37 request.typesToIgnore = Collections.singletonList("Annotation"); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:37 p2.setRelatedTo(p1); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:37 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:37 pixels1.setRelatedTo(pixels2); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:37 Pixels pixels = pixels1.getRelatedTo(); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:37 Assert.assertNull(pixels1.getRelatedTo()); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:23:37 pixels1.setRelatedTo(pixels2); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:37 Pixels pixels = pixels1.getRelatedTo(); 01:23:37 ^ 01:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:23:37 Assert.assertNull(pixels1.getRelatedTo()); 01:23:37 ^ 01:23:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:38 ^ 01:23:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:38 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:38 ^ 01:23:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:23:38 ^ 01:23:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:23:38 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:23:38 ^ 01:23:38 Note: Some input files use unchecked or unsafe operations. 01:23:38 Note: Recompile with -Xlint:unchecked for details. 01:23:38 91 warnings 01:23:38 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2139422372.tmp 01:23:38 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:23:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:38 :: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-624-b4465394cd-ice36-b32 :: integration :: Mon Aug 03 01:23:22 UTC 2026 01:23:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:23:38 :: publishing :: omero#OmeroJava-test 01:23:38 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-624-b4465394cd-ice36-b32.jar 01:23:38 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-624-b4465394cd-ice36-b32.xml 01:23:39 01:23:39 build-eclipse: 01:23:39 No sub-builds to iterate on 01:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:23:39 01:23:39 retrieve: 01:23:39 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:44 01:23:44 prepare: 01:23:44 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:23:49 01:23:49 release-clients: 01:23:49 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-624-b4465394cd-ice36-b32.zip 01:23:55 01:23:55 release-zip: 01:23:55 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-624-b4465394cd-ice36-b32.zip 01:24:07 01:24:07 BUILD SUCCESSFUL 01:24:07 Total time: 3 minutes 23 seconds 01:24:07 ++ '[' -d .git ']' 01:24:07 ++ python3 ./build.py release-src 01:24:08 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:24:09 01:24:09 release-src-git: 01:24:09 Releasing openmicroscopy-5.6.3-624-b4465394cd-ice36-b32 01:24:11 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-624-b4465394cd-ice36-b32.zip 01:24:11 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-624-b4465394cd-ice36-b32-base.zip 01:24:12 01:24:12 BUILD SUCCESSFUL 01:24:12 Total time: 4 seconds 01:24:12 ++ echo BUILD_NUMBER=32 01:24:12 ++ echo OMERO_BRANCH=merge_ci 01:24:12 ++ git_info 01:24:12 +++ git rev-parse HEAD 01:24:12 ++ HEAD=b4465394cd49c4f41d0e771d45a28b163bc891cb 01:24:12 ++ git log --max-count=1 b4465394cd49c4f41d0e771d45a28b163bc891cb 01:24:12 ++ env 01:24:12 ++ sort 01:24:12 Archiving artifacts 01:24:30 Finished: SUCCESS