11:41:26 Started by user devspace 11:41:26 Running as SYSTEM 11:41:26 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 11:41:26 The recommended git tool is: NONE 11:41:26 No credentials specified 11:41:26 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 11:41:26 Fetching changes from the remote Git repository 11:41:26 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 11:41:27 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 11:41:27 > git --version # timeout=10 11:41:27 > git --version # 'git version 2.52.0' 11:41:27 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:41:29 > git rev-parse origin/merge_ci^{commit} # timeout=10 11:41:29 Checking out Revision a4715d01e84809046deb6945d69c2aa505dcf6a8 (origin/merge_ci) 11:41:29 > git config core.sparsecheckout # timeout=10 11:41:29 > git checkout -f a4715d01e84809046deb6945d69c2aa505dcf6a8 # timeout=10 11:41:30 Commit message: "Add version.properties to etc/omero.properties" 11:41:30 > git rev-list --no-walk 0d859ccd1b31c9caea67b4f28d240331c0859657 # timeout=10 11:41:30 Cleaning workspace 11:41:30 > git rev-parse --verify HEAD # timeout=10 11:41:30 Resetting working tree 11:41:30 > git reset --hard # timeout=10 11:41:30 > git clean -fdx # timeout=10 11:42:12 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 28 11:42:12 [OMERO-build] $ /bin/bash -xe /tmp/jenkins6807929954972183049.sh 11:42:12 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 11:42:12 + cd src 11:42:12 + export OMERO_BRANCH=merge_ci 11:42:12 + OMERO_BRANCH=merge_ci 11:42:12 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 11:42:12 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 11:42:32 + source /home/omero/settings.env 11:42:32 ++ OMERO_DB_HOST=pg 11:42:32 ++ OMERO_DB_USER=postgres 11:42:32 ++ OMERO_DB_PASS= 11:42:32 ++ OMERO_ROOT_PASS=omero 11:42:32 ++ OMERO_DATA_DIR=/OMERO 11:42:32 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:42:32 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 11:42:53 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 11:42:54 Collecting zeroc-ice==3.6.5 11:42:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 11:42:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.9 MB/s eta 0:00:00 11:42:57 Installing collected packages: zeroc-ice 11:43:01 Successfully installed zeroc-ice-3.6.5 11:43:01 11:43:01 [notice] A new release of pip available: 22.3.1 -> 26.2 11:43:01 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:43:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 11:43:02 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 11:43:03 Collecting setuptools<66 11:43:03 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 11:43:03 Collecting omero-py 11:43:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 11:43:03 Collecting appdirs 11:43:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:43:03 Collecting future 11:43:03 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:43:03 Collecting numpy<3,>=2 11:43:04 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 11:43:04 Collecting Pillow>=10.0.0 11:43:04 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 11:43:04 Collecting PyYAML 11:43:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 11:43:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 11:43:04 Collecting requests 11:43:04 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 11:43:05 Collecting portalocker 11:43:05 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB) 11:43:05 Collecting charset_normalizer<4,>=2 11:43:05 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 11:43:05 Collecting idna<4,>=2.5 11:43:05 Using cached idna-3.18-py3-none-any.whl (65 kB) 11:43:05 Collecting urllib3<3,>=1.26 11:43:05 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 11:43:05 Collecting certifi>=2023.5.7 11:43:05 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 11:43:05 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 11:43:07 Attempting uninstall: setuptools 11:43:07 Found existing installation: setuptools 65.5.1 11:43:07 Uninstalling setuptools-65.5.1: 11:43:08 Successfully uninstalled setuptools-65.5.1 11:44:07 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 11:44:07 11:44:07 [notice] A new release of pip available: 22.3.1 -> 26.2 11:44:07 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:44:08 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 11:44:08 ++ deactivate nondestructive 11:44:08 ++ '[' -n '' ']' 11:44:08 ++ '[' -n '' ']' 11:44:08 ++ hash -r 11:44:08 ++ '[' -n '' ']' 11:44:08 ++ unset VIRTUAL_ENV 11:44:08 ++ unset VIRTUAL_ENV_PROMPT 11:44:08 ++ '[' '!' nondestructive = nondestructive ']' 11:44:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 11:44:08 ++ export VIRTUAL_ENV 11:44:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:44:08 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:44:08 ++ export PATH 11:44:08 ++ '[' -n '' ']' 11:44:08 ++ '[' -z '' ']' 11:44:08 ++ _OLD_VIRTUAL_PS1= 11:44:08 ++ PS1='(omero-virtualenv) ' 11:44:08 ++ export PS1 11:44:08 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 11:44:08 ++ export VIRTUAL_ENV_PROMPT 11:44:08 ++ hash -r 11:44:08 + source docs/hudson/OMERO.sh 11:44:08 ++ set -e 11:44:08 ++ set -u 11:44:08 ++ set -x 11:44:08 ++ source docs/hudson/functions.sh 11:44:08 ++ echo Building merge_ci 11:44:08 Building merge_ci 11:44:08 ++ python3 ./build.py build-dev release-all 11:44:08 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:44:09 11:44:09 check-ivy: 11:44:09 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 11:44:09 Created dir: /home/omero/workspace/OMERO-build/src/target 11:44:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:44:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:44:11 11:44:11 build-scons: 11:44:11 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:44:14 No sub-builds to iterate on 11:44:14 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:44:14 11:44:14 buildlist: 11:44:14 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:44:14 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:44:15 11:44:15 clean: 11:44:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:16 11:44:16 python-clean: 11:44:16 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:44:16 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-626-a4715d01e8-ice36-b34') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:44:16 warnings.warn( 11:44:16 running clean 11:44:16 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 11:44:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:44:17 11:44:17 python-clean: 11:44:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:44:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-626-a4715d01e8-ice36-b34') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:44:17 warnings.warn( 11:44:17 running clean 11:44:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 11:44:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:44:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:44:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:44:19 11:44:19 python-clean: 11:44:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:44:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-626-a4715d01e8-ice36-b34') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:44:19 warnings.warn( 11:44:19 running clean 11:44:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 11:44:19 Deleting directory /home/omero/workspace/OMERO-build/src/target 11:44:20 11:44:20 build-scons: 11:44:20 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:44:22 11:44:22 build: 11:44:22 No sub-builds to iterate on 11:44:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:44:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:44:23 11:44:23 tools-init: 11:44:23 no-op 11:44:24 11:44:24 retrieve: 11:44:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:44:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:45:10 11:45:10 prepare: 11:45:10 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:45:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 11:45:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 11:45:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:45:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:10 11:45:10 pre-compile: 11:45:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:25 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:28 11:45:28 compile: 11:45:28 no-op 11:45:29 11:45:29 package: 11:45:29 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 11:45:33 11:45:33 install: 11:45:33 :: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-626-a4715d01e8-ice36-b34 :: integration :: Mon Aug 03 11:44:23 UTC 2026 11:45:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 11:45:33 :: publishing :: omero#omero_client 11:45:33 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-626-a4715d01e8-ice36-b34/omero_client-5.6.3-626-a4715d01e8-ice36-b34.jar 11:45:33 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-626-a4715d01e8-ice36-b34/omero_client-5.6.3-626-a4715d01e8-ice36-b34.xml 11:45:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:45:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:45:34 11:45:34 retrieve: 11:45:34 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:45:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:45:35 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:45:35 11:45:35 dist: 11:45:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 11:45:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 11:45:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:45:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:45:36 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 11:45:36 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 11:45:36 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 11:45:37 Entering /home/omero/workspace/OMERO-build/src/components/tests... 11:45:37 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:45:38 11:45:38 copy-licenses: 11:45:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:45:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 11:45:38 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 11:45:39 11:45:39 copy-history: 11:45:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:45:39 11:45:39 copy-etc: 11:45:39 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 11:45:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 11:45:39 11:45:39 copy-sql: 11:45:39 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 11:45:49 11:45:49 copy-server: 11:45:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 11:45:55 11:45:55 copy-client: 11:45:55 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 11:45:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 11:46:04 11:46:04 update-version: 11:46:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 11:46:04 11:46:04 create-workdirs: 11:46:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 11:46:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 11:46:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 11:46:04 11:46:04 copy-luts: 11:46:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:46:04 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:46:05 11:46:05 test-compile: 11:46:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:46:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:07 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:46:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:46:07 11:46:07 testng-init: 11:46:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:16 11:46:16,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 11:46:16 11:46:16,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service. 11:46:16 11:46:16,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 11:46:16 11:46:16,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 11:46:16 11:46:16,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 11:46:16 11:46:16,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 11:46:16 11:46:16,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 11:46:16 11:46:16,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 11:46:16 11:46:16,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 11:46:16 11:46:16,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 11:46:16 11:46:16,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:46:16 11:46:16,020 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath. 11:46:16 11:46:16,020 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:46:16 11:46:16,020 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 11:46:16 11:46:16,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 11:46:16 11:46:16,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 11:46:16 11:46:16,287 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 11:46:16 11:46:16,289 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 11:46:16 11:46:16,289 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender. 11:46:16 11:46:16,363 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true 11:46:16 11:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 11:46:16 11:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 11:46:16 11:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 11:46:16 11:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 11:46:16 11:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 11:46:16 11:46:16,364 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 11:46:16 11:46:16,366 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration. 11:46:16 11:46:16,368 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point 11:46:16 11:46:16,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 354 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 11:46:16 11:46:16 lifecycle.test-compile: 11:46:16 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:46:16 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:46:16 warning: [options] bootstrap class path not set in conjunction with -source 8 11:46:16 warning: [options] source value 8 is obsolete and will be removed in a future release 11:46:16 warning: [options] target value 8 is obsolete and will be removed in a future release 11:46:16 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 11:46:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:18 import omero.grid.RawAccessRequest; 11:46:18 ^ 11:46:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:19 import omero.grid.RawAccessRequest; 11:46:19 ^ 11:46:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:19 import omero.grid.RawAccessRequest; 11:46:19 ^ 11:46:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:19 import omero.model.ImportJob; 11:46:19 ^ 11:46:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:46:19 import omero.model.ImportJobI; 11:46:19 ^ 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 11:46:20 IObject link = (IObject) linkClass.newInstance(); 11:46:20 ^ 11:46:20 where T is a type-variable: 11:46:20 T extends Object declared in class Class 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 11:46:20 T copy = (T) obj.getClass().newInstance(); 11:46:20 ^ 11:46:20 where T is a type-variable: 11:46:20 T extends Object declared in class Class 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:20 RawAccessRequest raw = new RawAccessRequest(); 11:46:20 ^ 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:20 RawAccessRequest raw = new RawAccessRequest(); 11:46:20 ^ 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:46:20 raw.repoUuid = legacy.root().getHash().getValue(); 11:46:20 ^ 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 11:46:20 raw.command = "rm"; 11:46:20 ^ 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 11:46:20 raw.args = Arrays.asList(path); 11:46:20 ^ 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 11:46:20 final IObject link = linkClass.newInstance(); 11:46:20 ^ 11:46:20 where T is a type-variable: 11:46:20 T extends Object declared in class Class 11:46:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 11:46:20 originalLink.setChild(annotationClass.newInstance()); 11:46:20 ^ 11:46:20 where T is a type-variable: 11:46:20 T extends Object declared in class Class 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:46:21 RoiResult r = svc.findByImage(id, new RoiOptions()); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:21 final RawAccessRequest request = new RawAccessRequest(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:21 final RawAccessRequest request = new RawAccessRequest(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:46:21 request.repoUuid = repo.root().getHash().getValue(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 11:46:21 request.command = "exists"; 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 11:46:21 request.args = Collections.singletonList(dirPath); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:21 final RawAccessRequest request = new RawAccessRequest(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:21 final RawAccessRequest request = new RawAccessRequest(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:46:21 request.repoUuid = repo.root().getHash().getValue(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 11:46:21 request.command = "exists"; 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 11:46:21 request.args = Collections.singletonList(dirName); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:21 final ImportJob importJob = new ImportJobI(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:46:21 final ImportJob importJob = new ImportJobI(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 11:46:21 importJob.setImageName(omero.rtypes.rstring(name)); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 11:46:21 importJob.setImageDescription(omero.rtypes.rstring(desc)); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:21 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:21 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:46:21 final String savedName = sent.getImageName().getValue().toString(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:46:21 final String savedDesc = sent.getImageDescription().getValue().toString(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:21 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:21 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:46:21 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 11:46:21 ^ 11:46:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:46:21 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 11:46:21 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 RoiResult r = svc.findByImage(image.getId().getValue(), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 11:46:22 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 11:46:22 table = svc.getTable(f.getId().getValue()); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 RoiResult r = svc.findByImage(image.getId().getValue(), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:46:22 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:46:22 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:46:22 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 11:46:22 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:46:22 svc.getShapeStatsRestricted( 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:46:22 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 11:46:22 ^ 11:46:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:22 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:46:22 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:23 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:23 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:23 request.typesToIgnore = Collections.singletonList("Annotation"); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:23 request.typesToIgnore = Collections.singletonList("Annotation"); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:23 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:23 p2.setRelatedTo(p1); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:23 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:23 pixels1.setRelatedTo(pixels2); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:23 Pixels pixels = pixels1.getRelatedTo(); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:23 Assert.assertNull(pixels1.getRelatedTo()); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:23 pixels1.setRelatedTo(pixels2); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:23 Pixels pixels = pixels1.getRelatedTo(); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:23 Assert.assertNull(pixels1.getRelatedTo()); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:23 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:23 ^ 11:46:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:23 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:23 ^ 11:46:23 Note: Some input files use unchecked or unsafe operations. 11:46:23 Note: Recompile with -Xlint:unchecked for details. 11:46:23 91 warnings 11:46:23 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_338034415.tmp 11:46:23 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 11:46:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:23 :: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-626-a4715d01e8-ice36-b34 :: integration :: Mon Aug 03 11:46:07 UTC 2026 11:46:23 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 11:46:23 :: publishing :: omero#OmeroJava-test 11:46:24 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-626-a4715d01e8-ice36-b34.jar 11:46:24 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-626-a4715d01e8-ice36-b34.xml 11:46:24 11:46:24 build-eclipse: 11:46:24 No sub-builds to iterate on 11:46:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:46:24 11:46:24 retrieve: 11:46:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:29 11:46:29 prepare: 11:46:29 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:46:33 11:46:33 release-clients: 11:46:33 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-626-a4715d01e8-ice36-b34.zip 11:46:39 11:46:39 release-zip: 11:46:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-626-a4715d01e8-ice36-b34.zip 11:46:51 11:46:51 BUILD SUCCESSFUL 11:46:51 Total time: 2 minutes 43 seconds 11:46:51 ++ '[' -d .git ']' 11:46:51 ++ python3 ./build.py release-src 11:46:51 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:46:52 11:46:52 release-src-git: 11:46:52 Releasing openmicroscopy-5.6.3-626-a4715d01e8-ice36-b34 11:46:54 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-626-a4715d01e8-ice36-b34.zip 11:46:54 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-626-a4715d01e8-ice36-b34-base.zip 11:46:56 11:46:56 BUILD SUCCESSFUL 11:46:56 Total time: 4 seconds 11:46:56 ++ echo BUILD_NUMBER=34 11:46:56 ++ echo OMERO_BRANCH=merge_ci 11:46:56 ++ git_info 11:46:56 +++ git rev-parse HEAD 11:46:56 ++ HEAD=a4715d01e84809046deb6945d69c2aa505dcf6a8 11:46:56 ++ git log --max-count=1 a4715d01e84809046deb6945d69c2aa505dcf6a8 11:46:56 ++ env 11:46:56 ++ sort 11:46:56 Archiving artifacts 11:47:13 Finished: SUCCESS