08:22:02 Started by upstream project "Trigger" build number 396 08:22:02 originally caused by: 08:22:02 Started by timer 08:22:02 Running as SYSTEM 08:22:02 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 08:22:02 The recommended git tool is: NONE 08:22:02 No credentials specified 08:22:02 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 08:22:02 Fetching changes from the remote Git repository 08:22:02 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 08:22:02 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 08:22:02 > git --version # timeout=10 08:22:02 > git --version # 'git version 2.43.5' 08:22:02 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:22:07 > git rev-parse origin/merge_ci^{commit} # timeout=10 08:22:07 Checking out Revision 0d4d6a64ddafe95abb5a0e181a59b83f73145144 (origin/merge_ci) 08:22:07 > git config core.sparsecheckout # timeout=10 08:22:07 > git checkout -f 0d4d6a64ddafe95abb5a0e181a59b83f73145144 # timeout=10 08:22:07 Commit message: "Add version.properties to etc/omero.properties" 08:22:07 > git rev-list --no-walk f11ef0093a748a916111b76039a372d4a27a8fec # timeout=10 08:22:07 Cleaning workspace 08:22:07 > git rev-parse --verify HEAD # timeout=10 08:22:07 Resetting working tree 08:22:07 > git reset --hard # timeout=10 08:22:07 > git clean -fdx # timeout=10 08:22:08 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 338 08:22:08 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13060179892009393386.sh 08:22:08 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 08:22:08 + cd src 08:22:08 + export OMERO_BRANCH=merge_ci 08:22:08 + OMERO_BRANCH=merge_ci 08:22:08 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 08:22:08 + source /home/omero/settings.env 08:22:08 ++ OMERO_DB_HOST=pg 08:22:08 ++ OMERO_DB_USER=postgres 08:22:08 ++ OMERO_DB_PASS= 08:22:08 ++ OMERO_ROOT_PASS=omero 08:22:08 ++ OMERO_DATA_DIR=/OMERO 08:22:08 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:22:08 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 08:22:12 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 08:22:13 Collecting zeroc-ice==3.6.5 08:22:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 08:22:16 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 08:22:16 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:22:16 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 08:22:16 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (76.0.0) 08:22:17 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6) 08:22:17 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 08:22:17 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 08:22:17 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 08:22:17 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 08:22:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 08:22:17 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 08:22:17 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 08:22:17 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 08:22:17 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 08:22:17 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 08:22:17 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 08:22:17 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 08:22:17 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 08:22:17 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:22:17 + source docs/hudson/OMERO.sh 08:22:17 ++ set -e 08:22:17 ++ set -u 08:22:17 ++ set -x 08:22:17 ++ source docs/hudson/functions.sh 08:22:17 ++ echo Building merge_ci 08:22:17 Building merge_ci 08:22:17 ++ python3 ./build.py build-dev release-all 08:22:17 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:22:18 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:22:19 08:22:19 check-ivy: 08:22:19 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 08:22:19 Created dir: /home/omero/workspace/OMERO-build/src/target 08:22:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:22:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:22:21 08:22:21 build-scons: 08:22:21 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:22:21 No sub-builds to iterate on 08:22:22 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:22:22 08:22:22 buildlist: 08:22:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:22:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:22:22 08:22:22 clean: 08:22:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:22:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:22:22 08:22:22 python-clean: 08:22:22 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:22:22 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-0d4d6a64dd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:22:22 warnings.warn( 08:22:22 running clean 08:22:23 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 08:22:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:22:23 08:22:23 python-clean: 08:22:23 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:22:23 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-0d4d6a64dd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:22:23 warnings.warn( 08:22:23 running clean 08:22:23 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 08:22:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:22:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:22:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:22:23 08:22:23 python-clean: 08:22:23 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:22:23 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-0d4d6a64dd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:22:23 warnings.warn( 08:22:23 running clean 08:22:23 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 08:22:23 Deleting directory /home/omero/workspace/OMERO-build/src/target 08:22:23 08:22:23 build-scons: 08:22:23 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:22:24 08:22:24 build: 08:22:24 No sub-builds to iterate on 08:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:22:24 08:22:24 tools-init: 08:22:24 no-op 08:22:24 08:22:24 retrieve: 08:22:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:22:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:22:25 WARNING: An illegal reflective access operation has occurred 08:22:25 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 08:22:25 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 08:22:25 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 08:22:25 WARNING: All illegal access operations will be denied in a future release 08:24:06 08:24:06 prepare: 08:24:06 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:24:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:24:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:24:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:24:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:24:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:24:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:24:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:24:06 08:24:06 pre-compile: 08:24:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:24:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:24:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:24:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:24:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:24:07 08:24:07 compile: 08:24:07 no-op 08:24:07 08:24:07 package: 08:24:07 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:24:07 08:24:07 install: 08:24:07 :: delivering :: omero#omero_client;working@0ac93bfd5614 :: 5.6.3-543-0d4d6a64dd-ice36 :: integration :: Mon Mar 10 08:22:24 UTC 2025 08:24:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:24:07 :: publishing :: omero#omero_client 08:24:07 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-0d4d6a64dd-ice36/omero_client-5.6.3-543-0d4d6a64dd-ice36.jar 08:24:07 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-0d4d6a64dd-ice36/omero_client-5.6.3-543-0d4d6a64dd-ice36.xml 08:24:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:24:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:24:08 08:24:08 retrieve: 08:24:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:24:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:24:08 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:24:08 08:24:08 dist: 08:24:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:24:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:24:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:24:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:24:08 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:24:08 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 08:24:08 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:24:08 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:24:08 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:24:08 08:24:08 copy-licenses: 08:24:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:24:08 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:24:08 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:24:09 08:24:09 copy-history: 08:24:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:24:09 08:24:09 copy-etc: 08:24:09 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:24:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:24:09 08:24:09 copy-sql: 08:24:09 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:24:17 08:24:17 copy-server: 08:24:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 08:24:17 08:24:17 copy-client: 08:24:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:24:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 08:24:19 08:24:19 update-version: 08:24:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:24:19 08:24:19 create-workdirs: 08:24:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:24:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:24:19 08:24:19 copy-luts: 08:24:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:24:19 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:24:19 08:24:19 test-compile: 08:24:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:24:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:24:20 08:24:20 testng-init: 08:24:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:24:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:24:24 08:24:23,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 08:24:24 08:24:23,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - No custom configurators were discovered as a service. 08:24:24 08:24:23,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:24:24 08:24:23,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:24:24 08:24:23,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:24:24 08:24:23,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:24:24 08:24:23,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:24:24 08:24:23,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:24:24 08:24:23,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:24:24 08:24:23,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:24:24 08:24:23,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:24:24 08:24:23,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70915da3 - Resource [logback.xml] occurs multiple times on the classpath. 08:24:24 08:24:23,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70915da3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:24:24 08:24:23,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70915da3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:24:24 08:24:24,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:24:24 08:24:24,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:24:24 08:24:24,219 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:24:24 08:24:24,220 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@66fd7b2 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:24:24 08:24:24,220 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@66fd7b2 - Please move "immediateFlush" property into the enclosing appender. 08:24:24 08:24:24,283 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@66fd7b2 - Setting the "immediateFlush" property of the enclosing appender to true 08:24:24 08:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:24:24 08:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:24:24 08:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:24:24 08:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:24:24 08:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:24:24 08:24:24,285 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:24:24 08:24:24,286 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@658ec00c - End of configuration. 08:24:24 08:24:24,288 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3565ee15 - Registering current configuration as safe fallback point 08:24:24 08:24:24,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:24:24 08:24:24 lifecycle.test-compile: 08:24:24 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:24:24 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:24:24 warning: [options] bootstrap class path not set in conjunction with -source 8 08:24:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:28 import omero.grid.RawAccessRequest; 08:24:28 ^ 08:24:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:28 import omero.grid.RawAccessRequest; 08:24:28 ^ 08:24:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:28 import omero.grid.RawAccessRequest; 08:24:28 ^ 08:24:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:24:28 import omero.model.ImportJob; 08:24:28 ^ 08:24:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:24:28 import omero.model.ImportJobI; 08:24:28 ^ 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:24:29 IObject link = (IObject) linkClass.newInstance(); 08:24:29 ^ 08:24:29 where T is a type-variable: 08:24:29 T extends Object declared in class Class 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:24:29 T copy = (T) obj.getClass().newInstance(); 08:24:29 ^ 08:24:29 where T is a type-variable: 08:24:29 T extends Object declared in class Class 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:29 RawAccessRequest raw = new RawAccessRequest(); 08:24:29 ^ 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:29 RawAccessRequest raw = new RawAccessRequest(); 08:24:29 ^ 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:24:29 raw.repoUuid = legacy.root().getHash().getValue(); 08:24:29 ^ 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:24:29 raw.command = "rm"; 08:24:29 ^ 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:24:29 raw.args = Arrays.asList(path); 08:24:29 ^ 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:24:29 final IObject link = linkClass.newInstance(); 08:24:29 ^ 08:24:29 where T is a type-variable: 08:24:29 T extends Object declared in class Class 08:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:24:29 originalLink.setChild(annotationClass.newInstance()); 08:24:29 ^ 08:24:29 where T is a type-variable: 08:24:29 T extends Object declared in class Class 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:24:30 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:30 final RawAccessRequest request = new RawAccessRequest(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:30 final RawAccessRequest request = new RawAccessRequest(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:24:30 request.repoUuid = repo.root().getHash().getValue(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:24:30 request.command = "exists"; 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:24:30 request.args = Collections.singletonList(dirPath); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:30 final RawAccessRequest request = new RawAccessRequest(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:24:30 final RawAccessRequest request = new RawAccessRequest(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:24:30 request.repoUuid = repo.root().getHash().getValue(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:24:30 request.command = "exists"; 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:24:30 request.args = Collections.singletonList(dirName); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:24:30 final ImportJob importJob = new ImportJobI(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:24:30 final ImportJob importJob = new ImportJobI(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:24:30 importJob.setImageName(omero.rtypes.rstring(name)); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:24:30 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:24:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:24:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:24:30 final String savedName = sent.getImageName().getValue().toString(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:24:30 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:24:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:24:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:24:30 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:24:30 ^ 08:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:24:30 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:24:30 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 RoiResult r = svc.findByImage(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:24:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:24:31 table = svc.getTable(f.getId().getValue()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 RoiResult r = svc.findByImage(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:24:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:24:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:24:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:24:31 svc.getShapeStatsRestricted( 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:24:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:24:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:24:31 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:24:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:24:31 request.typesToIgnore = Collections.singletonList("Annotation"); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:24:31 request.typesToIgnore = Collections.singletonList("Annotation"); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:24:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:24:31 p2.setRelatedTo(p1); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:24:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:24:31 pixels1.setRelatedTo(pixels2); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:24:31 Pixels pixels = pixels1.getRelatedTo(); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:24:31 Assert.assertNull(pixels1.getRelatedTo()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:24:31 pixels1.setRelatedTo(pixels2); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:24:31 Pixels pixels = pixels1.getRelatedTo(); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:24:31 Assert.assertNull(pixels1.getRelatedTo()); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:24:31 ^ 08:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:24:31 ^ 08:24:31 Note: Some input files use unchecked or unsafe operations. 08:24:31 Note: Recompile with -Xlint:unchecked for details. 08:24:31 88 warnings 08:24:31 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_792502391.tmp 08:24:31 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:24:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:24:31 :: delivering :: omero#OmeroJava-test;working@0ac93bfd5614 :: 5.6.3-543-0d4d6a64dd-ice36 :: integration :: Mon Mar 10 08:24:20 UTC 2025 08:24:31 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:24:31 :: publishing :: omero#OmeroJava-test 08:24:31 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-0d4d6a64dd-ice36.jar 08:24:31 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-0d4d6a64dd-ice36.xml 08:24:31 08:24:31 build-eclipse: 08:24:31 No sub-builds to iterate on 08:24:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:24:32 08:24:32 retrieve: 08:24:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:24:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:24:34 08:24:34 prepare: 08:24:34 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:24:35 08:24:35 release-clients: 08:24:35 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-543-0d4d6a64dd-ice36.zip 08:24:42 08:24:42 release-zip: 08:24:42 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-543-0d4d6a64dd-ice36.zip 08:24:55 08:24:55 BUILD SUCCESSFUL 08:24:55 Total time: 2 minutes 36 seconds 08:24:55 ++ '[' -d .git ']' 08:24:55 ++ python3 ./build.py release-src 08:24:55 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:24:55 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:24:55 08:24:55 release-src-git: 08:24:55 Releasing openmicroscopy-5.6.3-543-0d4d6a64dd-ice36 08:24:58 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-0d4d6a64dd-ice36.zip 08:24:58 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-0d4d6a64dd-ice36-base.zip 08:25:00 08:25:00 BUILD SUCCESSFUL 08:25:00 Total time: 4 seconds 08:25:00 ++ echo BUILD_NUMBER=342 08:25:00 ++ echo OMERO_BRANCH=merge_ci 08:25:00 ++ git_info 08:25:00 +++ git rev-parse HEAD 08:25:00 ++ HEAD=0d4d6a64ddafe95abb5a0e181a59b83f73145144 08:25:00 ++ git log --max-count=1 0d4d6a64ddafe95abb5a0e181a59b83f73145144 08:25:00 ++ env 08:25:00 ++ sort 08:25:00 Archiving artifacts 08:25:27 Finished: SUCCESS