22:40:25 Started by upstream project "Trigger" build number 408 22:40:25 originally caused by: 22:40:25 Started by timer 22:40:25 Running as SYSTEM 22:40:25 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 22:40:25 The recommended git tool is: NONE 22:40:25 No credentials specified 22:40:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 22:40:25 Fetching changes from the remote Git repository 22:40:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 22:40:25 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 22:40:25 > git --version # timeout=10 22:40:25 > git --version # 'git version 2.43.5' 22:40:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 22:40:27 > git rev-parse origin/merge_ci^{commit} # timeout=10 22:40:27 Checking out Revision 7a6303b7e095b3edaaa1f2ab6975efed8cceab32 (origin/merge_ci) 22:40:27 > git config core.sparsecheckout # timeout=10 22:40:27 > git checkout -f 7a6303b7e095b3edaaa1f2ab6975efed8cceab32 # timeout=10 22:40:27 Commit message: "Add version.properties to etc/omero.properties" 22:40:27 > git rev-list --no-walk 0c98bcfbc1c1fa765191223c949c994aee3dc8e4 # timeout=10 22:40:27 Cleaning workspace 22:40:27 > git rev-parse --verify HEAD # timeout=10 22:40:27 Resetting working tree 22:40:27 > git reset --hard # timeout=10 22:40:27 > git clean -fdx # timeout=10 22:40:28 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 344 22:40:29 [OMERO-build] $ /bin/bash -xe /tmp/jenkins14240564377930823633.sh 22:40:29 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 22:40:29 + cd src 22:40:29 + export OMERO_BRANCH=merge_ci 22:40:29 + OMERO_BRANCH=merge_ci 22:40:29 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 22:40:29 + source /home/omero/settings.env 22:40:29 ++ OMERO_DB_HOST=pg 22:40:29 ++ OMERO_DB_USER=postgres 22:40:29 ++ OMERO_DB_PASS= 22:40:29 ++ OMERO_ROOT_PASS=omero 22:40:29 ++ OMERO_DATA_DIR=/OMERO 22:40:29 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 22:40:29 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 22:40:34 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 22:40:35 Collecting zeroc-ice==3.6.5 22:40:36 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 22:40:38 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 22:40:38 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 22:40:38 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 22:40:38 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (77.0.3) 22:40:39 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6) 22:40:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 22:40:39 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 22:40:39 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 22:40:39 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 22:40:39 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 22:40:39 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 22:40:39 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 22:40:39 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 22:40:39 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 22:40:39 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 22:40:39 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 22:40:39 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 22:40:39 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 22:40:39 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 22:40:39 + source docs/hudson/OMERO.sh 22:40:39 ++ set -e 22:40:39 ++ set -u 22:40:39 ++ set -x 22:40:39 ++ source docs/hudson/functions.sh 22:40:39 ++ echo Building merge_ci 22:40:39 Building merge_ci 22:40:39 ++ python3 ./build.py build-dev release-all 22:40:39 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 22:40:39 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 22:40:40 22:40:40 check-ivy: 22:40:40 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 22:40:40 Created dir: /home/omero/workspace/OMERO-build/src/target 22:40:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 22:40:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:40:41 22:40:41 build-scons: 22:40:41 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 22:40:41 No sub-builds to iterate on 22:40:41 Entering /home/omero/workspace/OMERO-build/src/components/tools... 22:40:42 22:40:42 buildlist: 22:40:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 22:40:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:40:42 22:40:42 clean: 22:40:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 22:40:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 22:40:42 22:40:42 python-clean: 22:40:42 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 22:40:42 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-7a6303b7e0-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 22:40:42 warnings.warn( 22:40:42 running clean 22:40:42 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 22:40:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 22:40:43 22:40:43 python-clean: 22:40:43 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 22:40:43 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-7a6303b7e0-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 22:40:43 warnings.warn( 22:40:43 running clean 22:40:43 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 22:40:43 22:40:43 python-clean: 22:40:43 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 22:40:43 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-7a6303b7e0-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 22:40:43 warnings.warn( 22:40:43 running clean 22:40:43 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 22:40:43 Deleting directory /home/omero/workspace/OMERO-build/src/target 22:40:43 22:40:43 build-scons: 22:40:43 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 22:40:43 22:40:43 build: 22:40:43 No sub-builds to iterate on 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 22:40:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 22:40:43 22:40:43 tools-init: 22:40:43 no-op 22:40:43 22:40:43 retrieve: 22:40:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 22:40:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:40:44 WARNING: An illegal reflective access operation has occurred 22:40:44 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 22:40:44 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 22:40:44 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 22:40:44 WARNING: All illegal access operations will be denied in a future release 22:41:26 22:41:26 prepare: 22:41:26 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 22:41:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 22:41:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 22:41:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 22:41:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 22:41:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 22:41:26 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 22:41:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 22:41:26 22:41:26 pre-compile: 22:41:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 22:41:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 22:41:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 22:41:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 22:41:26 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 22:41:26 22:41:26 compile: 22:41:26 no-op 22:41:26 22:41:26 package: 22:41:26 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 22:41:26 22:41:26 install: 22:41:26 :: delivering :: omero#omero_client;working@14ce195d4b91 :: 5.6.3-548-7a6303b7e0-ice36 :: integration :: Thu Mar 20 22:40:43 UTC 2025 22:41:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 22:41:26 :: publishing :: omero#omero_client 22:41:27 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-7a6303b7e0-ice36/omero_client-5.6.3-548-7a6303b7e0-ice36.jar 22:41:27 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-7a6303b7e0-ice36/omero_client-5.6.3-548-7a6303b7e0-ice36.xml 22:41:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 22:41:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 22:41:27 22:41:27 retrieve: 22:41:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 22:41:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:41:27 Entering /home/omero/workspace/OMERO-build/src/components/tools... 22:41:27 22:41:27 dist: 22:41:27 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 22:41:27 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 22:41:27 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 22:41:27 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 22:41:27 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 22:41:27 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 22:41:27 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 22:41:27 Entering /home/omero/workspace/OMERO-build/src/components/tests... 22:41:27 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 22:41:28 22:41:28 copy-licenses: 22:41:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 22:41:28 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 22:41:28 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 22:41:28 22:41:28 copy-history: 22:41:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 22:41:28 22:41:28 copy-etc: 22:41:28 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 22:41:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 22:41:28 22:41:28 copy-sql: 22:41:28 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 22:41:36 22:41:36 copy-server: 22:41:36 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 22:41:37 22:41:37 copy-client: 22:41:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 22:41:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 22:41:38 22:41:38 update-version: 22:41:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 22:41:38 22:41:38 create-workdirs: 22:41:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 22:41:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 22:41:38 22:41:38 copy-luts: 22:41:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 22:41:38 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 22:41:38 22:41:38 test-compile: 22:41:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 22:41:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 22:41:38 22:41:38 testng-init: 22:41:38 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 22:41:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:41:43 22:41:42,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 22:41:43 22:41:42,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - No custom configurators were discovered as a service. 22:41:43 22:41:42,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 22:41:43 22:41:42,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 22:41:43 22:41:42,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 22:41:43 22:41:42,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 22:41:43 22:41:42,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 22:41:43 22:41:42,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 22:41:43 22:41:42,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 22:41:43 22:41:42,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 22:41:43 22:41:42,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 22:41:43 22:41:42,864 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs multiple times on the classpath. 22:41:43 22:41:42,864 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 22:41:43 22:41:42,864 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 22:41:43 22:41:43,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 22:41:43 22:41:43,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 22:41:43 22:41:43,091 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 22:41:43 22:41:43,093 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 22:41:43 22:41:43,093 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - Please move "immediateFlush" property into the enclosing appender. 22:41:43 22:41:43,155 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - Setting the "immediateFlush" property of the enclosing appender to true 22:41:43 22:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 22:41:43 22:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 22:41:43 22:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 22:41:43 22:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 22:41:43 22:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 22:41:43 22:41:43,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 22:41:43 22:41:43,157 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2896e105 - End of configuration. 22:41:43 22:41:43,160 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7c76d466 - Registering current configuration as safe fallback point 22:41:43 22:41:43,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 22:41:43 22:41:43 lifecycle.test-compile: 22:41:43 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 22:41:43 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 22:41:43 warning: [options] bootstrap class path not set in conjunction with -source 8 22:41:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:45 import omero.grid.RawAccessRequest; 22:41:45 ^ 22:41:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:45 import omero.grid.RawAccessRequest; 22:41:45 ^ 22:41:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:45 import omero.grid.RawAccessRequest; 22:41:45 ^ 22:41:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 22:41:45 import omero.model.ImportJob; 22:41:45 ^ 22:41:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 22:41:45 import omero.model.ImportJobI; 22:41:45 ^ 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 22:41:46 IObject link = (IObject) linkClass.newInstance(); 22:41:46 ^ 22:41:46 where T is a type-variable: 22:41:46 T extends Object declared in class Class 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 22:41:46 T copy = (T) obj.getClass().newInstance(); 22:41:46 ^ 22:41:46 where T is a type-variable: 22:41:46 T extends Object declared in class Class 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:46 RawAccessRequest raw = new RawAccessRequest(); 22:41:46 ^ 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:46 RawAccessRequest raw = new RawAccessRequest(); 22:41:46 ^ 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 22:41:46 raw.repoUuid = legacy.root().getHash().getValue(); 22:41:46 ^ 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 22:41:46 raw.command = "rm"; 22:41:46 ^ 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 22:41:46 raw.args = Arrays.asList(path); 22:41:46 ^ 22:41:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 22:41:46 final IObject link = linkClass.newInstance(); 22:41:46 ^ 22:41:46 where T is a type-variable: 22:41:46 T extends Object declared in class Class 22:41:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 22:41:47 originalLink.setChild(annotationClass.newInstance()); 22:41:47 ^ 22:41:47 where T is a type-variable: 22:41:47 T extends Object declared in class Class 22:41:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 22:41:47 RoiResult r = svc.findByImage(id, new RoiOptions()); 22:41:47 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:48 final RawAccessRequest request = new RawAccessRequest(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:48 final RawAccessRequest request = new RawAccessRequest(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 22:41:48 request.repoUuid = repo.root().getHash().getValue(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 22:41:48 request.command = "exists"; 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 22:41:48 request.args = Collections.singletonList(dirPath); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:48 final RawAccessRequest request = new RawAccessRequest(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 22:41:48 final RawAccessRequest request = new RawAccessRequest(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 22:41:48 request.repoUuid = repo.root().getHash().getValue(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 22:41:48 request.command = "exists"; 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 22:41:48 request.args = Collections.singletonList(dirName); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 22:41:48 final ImportJob importJob = new ImportJobI(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 22:41:48 final ImportJob importJob = new ImportJobI(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 22:41:48 importJob.setImageName(omero.rtypes.rstring(name)); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 22:41:48 importJob.setImageDescription(omero.rtypes.rstring(desc)); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 22:41:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 22:41:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 22:41:48 final String savedName = sent.getImageName().getValue().toString(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 22:41:48 final String savedDesc = sent.getImageDescription().getValue().toString(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 22:41:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 22:41:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 22:41:48 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 22:41:48 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 RoiResult r = svc.findByImage(image.getId().getValue(), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 l = svc.getRoiMeasurements(image.getId().getValue(), options); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 l = svc.getRoiMeasurements(image.getId().getValue(), options); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 22:41:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 22:41:48 table = svc.getTable(f.getId().getValue()); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 RoiResult r = svc.findByImage(image.getId().getValue(), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 22:41:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 22:41:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 22:41:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 22:41:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 22:41:48 svc.getShapeStatsRestricted( 22:41:48 ^ 22:41:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 22:41:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 22:41:48 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 22:41:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 22:41:49 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 22:41:49 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 22:41:49 request.typesToIgnore = Collections.singletonList("Annotation"); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 22:41:49 request.typesToIgnore = Collections.singletonList("Annotation"); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 22:41:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 22:41:49 p2.setRelatedTo(p1); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 22:41:49 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 22:41:49 pixels1.setRelatedTo(pixels2); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 22:41:49 Pixels pixels = pixels1.getRelatedTo(); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 22:41:49 Assert.assertNull(pixels1.getRelatedTo()); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 22:41:49 pixels1.setRelatedTo(pixels2); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 22:41:49 Pixels pixels = pixels1.getRelatedTo(); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 22:41:49 Assert.assertNull(pixels1.getRelatedTo()); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options); 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 22:41:49 ^ 22:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 22:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options); 22:41:49 ^ 22:41:49 Note: Some input files use unchecked or unsafe operations. 22:41:49 Note: Recompile with -Xlint:unchecked for details. 22:41:49 88 warnings 22:41:49 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_121348555.tmp 22:41:49 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 22:41:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:41:49 :: delivering :: omero#OmeroJava-test;working@14ce195d4b91 :: 5.6.3-548-7a6303b7e0-ice36 :: integration :: Thu Mar 20 22:41:38 UTC 2025 22:41:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 22:41:49 :: publishing :: omero#OmeroJava-test 22:41:49 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-7a6303b7e0-ice36.jar 22:41:49 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-7a6303b7e0-ice36.xml 22:41:49 22:41:49 build-eclipse: 22:41:49 No sub-builds to iterate on 22:41:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 22:41:50 22:41:50 retrieve: 22:41:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 22:41:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 22:41:52 22:41:52 prepare: 22:41:52 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 22:41:53 22:41:53 release-clients: 22:41:53 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-7a6303b7e0-ice36.zip 22:41:59 22:41:59 release-zip: 22:41:59 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-7a6303b7e0-ice36.zip 22:42:11 22:42:11 BUILD SUCCESSFUL 22:42:11 Total time: 1 minute 31 seconds 22:42:11 ++ '[' -d .git ']' 22:42:11 ++ python3 ./build.py release-src 22:42:11 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 22:42:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 22:42:11 22:42:11 release-src-git: 22:42:11 Releasing openmicroscopy-5.6.3-548-7a6303b7e0-ice36 22:42:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-7a6303b7e0-ice36.zip 22:42:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-7a6303b7e0-ice36-base.zip 22:42:14 22:42:14 BUILD SUCCESSFUL 22:42:14 Total time: 3 seconds 22:42:14 ++ echo BUILD_NUMBER=348 22:42:14 ++ echo OMERO_BRANCH=merge_ci 22:42:14 ++ git_info 22:42:14 +++ git rev-parse HEAD 22:42:14 ++ HEAD=7a6303b7e095b3edaaa1f2ab6975efed8cceab32 22:42:14 ++ git log --max-count=1 7a6303b7e095b3edaaa1f2ab6975efed8cceab32 22:42:14 ++ env 22:42:14 ++ sort 22:42:15 Archiving artifacts 22:42:44 Finished: SUCCESS