01:26:52 Started by upstream project "Trigger" build number 414 01:26:52 originally caused by: 01:26:52 Started by user devspace 01:26:52 Restarted from build #413, stage Bio-Formats 01:26:52 Running as SYSTEM 01:26:52 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:26:52 The recommended git tool is: NONE 01:26:52 No credentials specified 01:26:52 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:26:52 Fetching changes from the remote Git repository 01:26:52 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:26:52 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:26:52 > git --version # timeout=10 01:26:52 > git --version # 'git version 2.43.5' 01:26:52 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:27:00 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:27:00 Checking out Revision 9398da435960f0aaf3471464e628b35148eef33c (origin/merge_ci) 01:27:00 > git config core.sparsecheckout # timeout=10 01:27:00 > git checkout -f 9398da435960f0aaf3471464e628b35148eef33c # timeout=10 01:27:00 Commit message: "Add version.properties to etc/omero.properties" 01:27:00 > git rev-list --no-walk bf8a6734d517c690e2122815e784dc5f9a9147fe # timeout=10 01:27:00 Cleaning workspace 01:27:00 > git rev-parse --verify HEAD # timeout=10 01:27:00 Resetting working tree 01:27:00 > git reset --hard # timeout=10 01:27:00 > git clean -fdx # timeout=10 01:27:01 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 349 01:27:01 [OMERO-build] $ /bin/bash -xe /tmp/jenkins4769892361404294336.sh 01:27:01 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 01:27:01 + cd src 01:27:01 + export OMERO_BRANCH=merge_ci 01:27:01 + OMERO_BRANCH=merge_ci 01:27:01 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:27:01 + source /home/omero/settings.env 01:27:01 ++ OMERO_DB_HOST=pg 01:27:01 ++ OMERO_DB_USER=postgres 01:27:01 ++ OMERO_DB_PASS= 01:27:01 ++ OMERO_ROOT_PASS=omero 01:27:01 ++ OMERO_DATA_DIR=/OMERO 01:27:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:27:01 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:27:07 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 01:27:08 Collecting zeroc-ice==3.6.5 01:27:09 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 01:27:11 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 01:27:11 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:27:11 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 01:27:12 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (77.0.3) 01:27:12 Collecting setuptools 01:27:12 Using cached setuptools-78.0.2-py3-none-any.whl (1.3 MB) 01:27:12 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6) 01:27:12 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 01:27:12 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 01:27:12 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 01:27:12 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 01:27:12 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 01:27:12 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 01:27:12 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 01:27:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 01:27:12 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 01:27:13 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 01:27:13 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 01:27:13 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 01:27:13 Installing collected packages: setuptools 01:27:13 Attempting uninstall: setuptools 01:27:13 Found existing installation: setuptools 77.0.3 01:27:13 Uninstalling setuptools-77.0.3: 01:27:13 Successfully uninstalled setuptools-77.0.3 01:27:14 Successfully installed setuptools-78.0.2 01:27:14 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 01:27:14 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:27:14 + source docs/hudson/OMERO.sh 01:27:14 ++ set -e 01:27:14 ++ set -u 01:27:14 ++ set -x 01:27:14 ++ source docs/hudson/functions.sh 01:27:14 ++ echo Building merge_ci 01:27:14 Building merge_ci 01:27:14 ++ python3 ./build.py build-dev release-all 01:27:14 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:27:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:27:16 01:27:16 check-ivy: 01:27:16 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:27:16 Created dir: /home/omero/workspace/OMERO-build/src/target 01:27:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:27:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:27:18 01:27:18 build-scons: 01:27:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:27:18 No sub-builds to iterate on 01:27:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:27:19 01:27:19 buildlist: 01:27:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:27:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:27:19 01:27:19 clean: 01:27:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:27:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:27:19 01:27:19 python-clean: 01:27:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:27:20 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-9398da4359-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:27:20 warnings.warn( 01:27:20 running clean 01:27:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:27:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:27:20 01:27:20 python-clean: 01:27:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:27:20 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-9398da4359-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:27:20 warnings.warn( 01:27:20 running clean 01:27:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:27:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:27:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:27:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:27:20 01:27:20 python-clean: 01:27:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:27:20 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-9398da4359-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:27:20 warnings.warn( 01:27:20 running clean 01:27:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:27:20 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:27:21 01:27:21 build-scons: 01:27:21 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:27:21 01:27:21 build: 01:27:21 No sub-builds to iterate on 01:27:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:27:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:27:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:27:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:27:21 01:27:21 tools-init: 01:27:21 no-op 01:27:21 01:27:21 retrieve: 01:27:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:27:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:27:22 WARNING: An illegal reflective access operation has occurred 01:27:22 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 01:27:22 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 01:27:22 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 01:27:22 WARNING: All illegal access operations will be denied in a future release 01:27:51 01:27:51 prepare: 01:27:51 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:27:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:27:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:27:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:27:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:27:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:27:51 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:27:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:27:51 01:27:51 pre-compile: 01:27:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:27:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:27:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:27:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:27:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:27:51 01:27:51 compile: 01:27:51 no-op 01:27:51 01:27:51 package: 01:27:51 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:27:52 01:27:52 install: 01:27:52 :: delivering :: omero#omero_client;working@fb338712db3d :: 5.6.3-548-9398da4359-ice36 :: integration :: Tue Mar 25 01:27:21 UTC 2025 01:27:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:27:52 :: publishing :: omero#omero_client 01:27:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-9398da4359-ice36/omero_client-5.6.3-548-9398da4359-ice36.jar 01:27:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-9398da4359-ice36/omero_client-5.6.3-548-9398da4359-ice36.xml 01:27:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:27:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:27:52 01:27:52 retrieve: 01:27:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:27:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:27:52 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:27:52 01:27:52 dist: 01:27:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:27:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:27:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:27:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:27:52 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:27:52 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:27:52 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:27:53 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:27:53 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:27:53 01:27:53 copy-licenses: 01:27:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:27:53 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:27:53 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:27:53 01:27:53 copy-history: 01:27:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:27:53 01:27:53 copy-etc: 01:27:53 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:27:54 01:27:54 copy-sql: 01:27:54 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:28:01 01:28:01 copy-server: 01:28:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 01:28:01 01:28:01 copy-client: 01:28:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:28:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 01:28:02 01:28:02 update-version: 01:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:28:02 01:28:02 create-workdirs: 01:28:02 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:28:02 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:28:02 01:28:02 copy-luts: 01:28:02 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:28:02 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:28:03 01:28:03 test-compile: 01:28:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:28:04 01:28:04 testng-init: 01:28:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:28:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:28:07 01:28:07,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 01:28:07 01:28:07,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - No custom configurators were discovered as a service. 01:28:07 01:28:07,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:28:07 01:28:07,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:28:07 01:28:07,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:28:07 01:28:07,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:28:07 01:28:07,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:28:07 01:28:07,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:28:07 01:28:07,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:28:07 01:28:07,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:28:07 01:28:07,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:28:07 01:28:07,253 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7c76d466 - Resource [logback.xml] occurs multiple times on the classpath. 01:28:07 01:28:07,253 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7c76d466 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:28:07 01:28:07,253 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7c76d466 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:28:07 01:28:07,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:28:07 01:28:07,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:28:07 01:28:07,479 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:28:07 01:28:07,481 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5748ffe3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:28:07 01:28:07,481 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5748ffe3 - Please move "immediateFlush" property into the enclosing appender. 01:28:07 01:28:07,547 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5748ffe3 - Setting the "immediateFlush" property of the enclosing appender to true 01:28:07 01:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:28:07 01:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:28:07 01:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:28:07 01:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:28:07 01:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:28:07 01:28:07,548 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:28:07 01:28:07,549 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3528740f - End of configuration. 01:28:07 01:28:07,552 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2a292566 - Registering current configuration as safe fallback point 01:28:07 01:28:07,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 301 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:28:07 01:28:07 lifecycle.test-compile: 01:28:07 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:28:07 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:28:08 warning: [options] bootstrap class path not set in conjunction with -source 8 01:28:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:11 import omero.grid.RawAccessRequest; 01:28:11 ^ 01:28:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:11 import omero.grid.RawAccessRequest; 01:28:11 ^ 01:28:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:11 import omero.grid.RawAccessRequest; 01:28:11 ^ 01:28:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:28:11 import omero.model.ImportJob; 01:28:11 ^ 01:28:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:28:11 import omero.model.ImportJobI; 01:28:11 ^ 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:28:12 IObject link = (IObject) linkClass.newInstance(); 01:28:12 ^ 01:28:12 where T is a type-variable: 01:28:12 T extends Object declared in class Class 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:28:12 T copy = (T) obj.getClass().newInstance(); 01:28:12 ^ 01:28:12 where T is a type-variable: 01:28:12 T extends Object declared in class Class 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:12 RawAccessRequest raw = new RawAccessRequest(); 01:28:12 ^ 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:12 RawAccessRequest raw = new RawAccessRequest(); 01:28:12 ^ 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:28:12 raw.repoUuid = legacy.root().getHash().getValue(); 01:28:12 ^ 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:28:12 raw.command = "rm"; 01:28:12 ^ 01:28:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:28:12 raw.args = Arrays.asList(path); 01:28:12 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:28:13 final IObject link = linkClass.newInstance(); 01:28:13 ^ 01:28:13 where T is a type-variable: 01:28:13 T extends Object declared in class Class 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:28:13 originalLink.setChild(annotationClass.newInstance()); 01:28:13 ^ 01:28:13 where T is a type-variable: 01:28:13 T extends Object declared in class Class 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:28:13 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:13 final RawAccessRequest request = new RawAccessRequest(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:13 final RawAccessRequest request = new RawAccessRequest(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:28:13 request.repoUuid = repo.root().getHash().getValue(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:28:13 request.command = "exists"; 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:28:13 request.args = Collections.singletonList(dirPath); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:13 final RawAccessRequest request = new RawAccessRequest(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:28:13 final RawAccessRequest request = new RawAccessRequest(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:28:13 request.repoUuid = repo.root().getHash().getValue(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:28:13 request.command = "exists"; 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:28:13 request.args = Collections.singletonList(dirName); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:28:13 final ImportJob importJob = new ImportJobI(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:28:13 final ImportJob importJob = new ImportJobI(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:28:13 importJob.setImageName(omero.rtypes.rstring(name)); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:28:13 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:28:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:28:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:28:13 final String savedName = sent.getImageName().getValue().toString(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:28:13 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:28:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:28:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:28:13 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:28:13 ^ 01:28:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:28:13 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:28:13 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 RoiResult r = svc.findByImage(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:28:14 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:28:14 table = svc.getTable(f.getId().getValue()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 RoiResult r = svc.findByImage(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:28:14 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:28:14 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 01:28:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:28:14 svc.getShapeStatsRestricted( 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:28:14 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:28:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:28:14 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:28:14 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:28:14 request.typesToIgnore = Collections.singletonList("Annotation"); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:28:14 request.typesToIgnore = Collections.singletonList("Annotation"); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:28:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:28:14 p2.setRelatedTo(p1); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:28:14 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:28:14 pixels1.setRelatedTo(pixels2); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:28:14 Pixels pixels = pixels1.getRelatedTo(); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:28:14 Assert.assertNull(pixels1.getRelatedTo()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:28:14 pixels1.setRelatedTo(pixels2); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:28:14 Pixels pixels = pixels1.getRelatedTo(); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:28:14 Assert.assertNull(pixels1.getRelatedTo()); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:28:14 ^ 01:28:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:28:14 ^ 01:28:14 Note: Some input files use unchecked or unsafe operations. 01:28:14 Note: Recompile with -Xlint:unchecked for details. 01:28:14 88 warnings 01:28:15 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1680936095.tmp 01:28:15 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:28:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:28:15 :: delivering :: omero#OmeroJava-test;working@fb338712db3d :: 5.6.3-548-9398da4359-ice36 :: integration :: Tue Mar 25 01:28:03 UTC 2025 01:28:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:28:15 :: publishing :: omero#OmeroJava-test 01:28:15 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-9398da4359-ice36.jar 01:28:15 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-9398da4359-ice36.xml 01:28:15 01:28:15 build-eclipse: 01:28:15 No sub-builds to iterate on 01:28:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:28:15 01:28:15 retrieve: 01:28:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:28:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:28:19 01:28:19 prepare: 01:28:19 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:28:22 01:28:22 release-clients: 01:28:22 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-9398da4359-ice36.zip 01:28:28 01:28:28 release-zip: 01:28:28 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-9398da4359-ice36.zip 01:28:40 01:28:40 BUILD SUCCESSFUL 01:28:40 Total time: 1 minute 25 seconds 01:28:40 ++ '[' -d .git ']' 01:28:40 ++ python3 ./build.py release-src 01:28:40 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:28:40 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:28:41 01:28:41 release-src-git: 01:28:41 Releasing openmicroscopy-5.6.3-548-9398da4359-ice36 01:28:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-9398da4359-ice36.zip 01:28:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-9398da4359-ice36-base.zip 01:28:45 01:28:45 BUILD SUCCESSFUL 01:28:45 Total time: 4 seconds 01:28:45 ++ echo BUILD_NUMBER=353 01:28:45 ++ echo OMERO_BRANCH=merge_ci 01:28:45 ++ git_info 01:28:45 +++ git rev-parse HEAD 01:28:45 ++ HEAD=9398da435960f0aaf3471464e628b35148eef33c 01:28:45 ++ git log --max-count=1 9398da435960f0aaf3471464e628b35148eef33c 01:28:45 ++ env 01:28:45 ++ sort 01:28:45 Archiving artifacts 01:29:13 Finished: SUCCESS