01:45:38 Started by upstream project "Trigger" build number 425 01:45:38 originally caused by: 01:45:38 Started by timer 01:45:38 Running as SYSTEM 01:45:38 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:45:38 The recommended git tool is: NONE 01:45:38 No credentials specified 01:45:38 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:45:38 Fetching changes from the remote Git repository 01:45:38 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:45:38 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:45:38 > git --version # timeout=10 01:45:38 > git --version # 'git version 2.43.5' 01:45:38 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:45:39 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:45:39 Checking out Revision 4b631c68af2f687ec7644775e80f857b96164f26 (origin/merge_ci) 01:45:39 > git config core.sparsecheckout # timeout=10 01:45:39 > git checkout -f 4b631c68af2f687ec7644775e80f857b96164f26 # timeout=10 01:45:39 Commit message: "Add version.properties to etc/omero.properties" 01:45:39 > git rev-list --no-walk 2054640d80975aaac40a71c537f3bd719dd9d52c # timeout=10 01:45:39 Cleaning workspace 01:45:39 > git rev-parse --verify HEAD # timeout=10 01:45:39 Resetting working tree 01:45:39 > git reset --hard # timeout=10 01:45:39 > git clean -fdx # timeout=10 01:45:39 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 359 01:45:39 [OMERO-build] $ /bin/bash -xe /tmp/jenkins10853622577073063014.sh 01:45:39 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 01:45:39 + cd src 01:45:39 + export OMERO_BRANCH=merge_ci 01:45:39 + OMERO_BRANCH=merge_ci 01:45:39 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:45:39 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 01:45:39 + source /home/omero/settings.env 01:45:39 ++ OMERO_DB_HOST=pg 01:45:39 ++ OMERO_DB_USER=postgres 01:45:39 ++ OMERO_DB_PASS= 01:45:39 ++ OMERO_ROOT_PASS=omero 01:45:39 ++ OMERO_DATA_DIR=/OMERO 01:45:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:45:39 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:45:43 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:45:43 Collecting zeroc-ice==3.6.5 01:45:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:45:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.3 MB/s eta 0:00:00 01:45:46 Installing collected packages: zeroc-ice 01:45:46 Successfully installed zeroc-ice-3.6.5 01:45:46 01:45:46 [notice] A new release of pip available: 22.3.1 -> 25.0.1 01:45:46 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:45:47 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 01:45:47 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 01:45:47 Collecting setuptools<66 01:45:47 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 01:45:47 Collecting omero-py 01:45:47 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB) 01:45:47 Collecting urllib3<2 01:45:47 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 01:45:47 Collecting appdirs 01:45:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:45:47 Collecting future 01:45:47 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:45:48 Collecting numpy<2 01:45:48 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB) 01:45:48 Collecting Pillow>=10.0.0 01:45:49 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB) 01:45:49 Collecting PyYAML 01:45:49 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 01:45:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:45:49 Collecting requests 01:45:49 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 01:45:49 Collecting portalocker 01:45:49 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 01:45:49 Collecting charset-normalizer<4,>=2 01:45:49 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) 01:45:49 Collecting idna<4,>=2.5 01:45:49 Using cached idna-3.10-py3-none-any.whl (70 kB) 01:45:49 Collecting certifi>=2017.4.17 01:45:49 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 01:45:49 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 01:45:49 Attempting uninstall: setuptools 01:45:49 Found existing installation: setuptools 65.5.1 01:45:49 Uninstalling setuptools-65.5.1: 01:45:49 Successfully uninstalled setuptools-65.5.1 01:45:55 Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 01:45:55 01:45:55 [notice] A new release of pip available: 22.3.1 -> 25.0.1 01:45:55 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:45:55 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 01:45:55 ++ deactivate nondestructive 01:45:55 ++ '[' -n '' ']' 01:45:55 ++ '[' -n '' ']' 01:45:55 ++ hash -r 01:45:55 ++ '[' -n '' ']' 01:45:55 ++ unset VIRTUAL_ENV 01:45:55 ++ unset VIRTUAL_ENV_PROMPT 01:45:55 ++ '[' '!' nondestructive = nondestructive ']' 01:45:55 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 01:45:55 ++ export VIRTUAL_ENV 01:45:55 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:45:55 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:45:55 ++ export PATH 01:45:55 ++ '[' -n '' ']' 01:45:55 ++ '[' -z '' ']' 01:45:55 ++ _OLD_VIRTUAL_PS1= 01:45:55 ++ PS1='(omero-virtualenv) ' 01:45:55 ++ export PS1 01:45:55 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 01:45:55 ++ export VIRTUAL_ENV_PROMPT 01:45:55 ++ hash -r 01:45:55 + source docs/hudson/OMERO.sh 01:45:55 ++ set -e 01:45:55 ++ set -u 01:45:55 ++ set -x 01:45:55 ++ source docs/hudson/functions.sh 01:45:55 ++ echo Building merge_ci 01:45:55 Building merge_ci 01:45:55 ++ python3 ./build.py build-dev release-all 01:45:55 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:45:55 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:45:56 01:45:56 check-ivy: 01:45:56 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:45:56 Created dir: /home/omero/workspace/OMERO-build/src/target 01:45:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:45:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:56 01:45:56 build-scons: 01:45:56 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:45:56 No sub-builds to iterate on 01:45:57 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:45:57 01:45:57 buildlist: 01:45:57 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:45:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:57 01:45:57 clean: 01:45:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:57 01:45:57 python-clean: 01:45:57 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:45:57 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-548-4b631c68af-ice36-b367') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:45:57 warnings.warn( 01:45:57 running clean 01:45:57 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:45:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:45:58 01:45:58 python-clean: 01:45:58 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:45:58 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-548-4b631c68af-ice36-b367') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:45:58 warnings.warn( 01:45:58 running clean 01:45:58 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:58 01:45:58 python-clean: 01:45:58 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:45:58 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-548-4b631c68af-ice36-b367') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:45:58 warnings.warn( 01:45:58 running clean 01:45:58 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:45:58 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:45:58 01:45:58 build-scons: 01:45:58 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:45:58 01:45:58 build: 01:45:58 No sub-builds to iterate on 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:45:58 01:45:58 tools-init: 01:45:58 no-op 01:45:59 01:45:59 retrieve: 01:45:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:45:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:59 WARNING: An illegal reflective access operation has occurred 01:45:59 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 01:45:59 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 01:45:59 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 01:45:59 WARNING: All illegal access operations will be denied in a future release 01:46:12 01:46:12 prepare: 01:46:12 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:46:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:46:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:46:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:46:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:46:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:46:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:46:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:46:12 01:46:12 pre-compile: 01:46:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:46:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:46:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:46:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:46:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:46:12 01:46:12 compile: 01:46:12 no-op 01:46:13 01:46:13 package: 01:46:13 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:46:13 01:46:13 install: 01:46:13 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-548-4b631c68af-ice36-b367 :: integration :: Mon Mar 31 01:45:58 UTC 2025 01:46:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:46:13 :: publishing :: omero#omero_client 01:46:13 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-4b631c68af-ice36-b367/omero_client-5.6.3-548-4b631c68af-ice36-b367.jar 01:46:13 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-4b631c68af-ice36-b367/omero_client-5.6.3-548-4b631c68af-ice36-b367.xml 01:46:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:46:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:46:14 01:46:14 retrieve: 01:46:14 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:46:14 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:46:14 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:46:14 01:46:14 dist: 01:46:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:46:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:46:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:46:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:46:14 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:46:14 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:46:14 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:46:14 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:46:14 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:46:14 01:46:14 copy-licenses: 01:46:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:46:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:46:14 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:46:14 01:46:14 copy-history: 01:46:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:46:14 01:46:14 copy-etc: 01:46:14 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:46:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:46:14 01:46:14 copy-sql: 01:46:14 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:46:18 01:46:18 copy-server: 01:46:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 01:46:18 01:46:18 copy-client: 01:46:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:46:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 01:46:19 01:46:19 update-version: 01:46:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:46:19 01:46:19 create-workdirs: 01:46:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:46:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:46:19 01:46:19 copy-luts: 01:46:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:46:19 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:46:19 01:46:19 test-compile: 01:46:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:46:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:46:20 01:46:20 testng-init: 01:46:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:46:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:46:23 01:46:23,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 01:46:23 01:46:23,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service. 01:46:23 01:46:23,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:46:23 01:46:23,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:46:23 01:46:23,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:46:23 01:46:23,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:46:23 01:46:23,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:46:23 01:46:23,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:46:23 01:46:23,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:46:23 01:46:23,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:46:23 01:46:23,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:46:23 01:46:23,022 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath. 01:46:23 01:46:23,022 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:46:23 01:46:23,022 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:46:23 01:46:23,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:46:23 01:46:23,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:46:23 01:46:23,238 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:46:23 01:46:23,239 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:46:23 01:46:23,239 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender. 01:46:23 01:46:23,299 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true 01:46:23 01:46:23,300 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:46:23 01:46:23,300 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:46:23 01:46:23,300 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:46:23 01:46:23,300 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:46:23 01:46:23,300 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:46:23 01:46:23,300 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:46:23 01:46:23,302 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration. 01:46:23 01:46:23,304 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point 01:46:23 01:46:23,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:46:23 01:46:23 lifecycle.test-compile: 01:46:23 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:46:23 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:46:23 warning: [options] bootstrap class path not set in conjunction with -source 8 01:46:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:24 import omero.grid.RawAccessRequest; 01:46:24 ^ 01:46:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:25 import omero.grid.RawAccessRequest; 01:46:25 ^ 01:46:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:25 import omero.grid.RawAccessRequest; 01:46:25 ^ 01:46:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:46:25 import omero.model.ImportJob; 01:46:25 ^ 01:46:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:46:25 import omero.model.ImportJobI; 01:46:25 ^ 01:46:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:46:25 IObject link = (IObject) linkClass.newInstance(); 01:46:25 ^ 01:46:25 where T is a type-variable: 01:46:25 T extends Object declared in class Class 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:46:26 T copy = (T) obj.getClass().newInstance(); 01:46:26 ^ 01:46:26 where T is a type-variable: 01:46:26 T extends Object declared in class Class 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:26 RawAccessRequest raw = new RawAccessRequest(); 01:46:26 ^ 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:26 RawAccessRequest raw = new RawAccessRequest(); 01:46:26 ^ 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:46:26 raw.repoUuid = legacy.root().getHash().getValue(); 01:46:26 ^ 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:46:26 raw.command = "rm"; 01:46:26 ^ 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:46:26 raw.args = Arrays.asList(path); 01:46:26 ^ 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:46:26 final IObject link = linkClass.newInstance(); 01:46:26 ^ 01:46:26 where T is a type-variable: 01:46:26 T extends Object declared in class Class 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:46:26 originalLink.setChild(annotationClass.newInstance()); 01:46:26 ^ 01:46:26 where T is a type-variable: 01:46:26 T extends Object declared in class Class 01:46:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:46:26 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:46:26 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:27 final RawAccessRequest request = new RawAccessRequest(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:27 final RawAccessRequest request = new RawAccessRequest(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:46:27 request.repoUuid = repo.root().getHash().getValue(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:46:27 request.command = "exists"; 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:46:27 request.args = Collections.singletonList(dirPath); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:27 final RawAccessRequest request = new RawAccessRequest(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:46:27 final RawAccessRequest request = new RawAccessRequest(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:46:27 request.repoUuid = repo.root().getHash().getValue(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:46:27 request.command = "exists"; 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:46:27 request.args = Collections.singletonList(dirName); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:46:27 final ImportJob importJob = new ImportJobI(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:46:27 final ImportJob importJob = new ImportJobI(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:46:27 importJob.setImageName(omero.rtypes.rstring(name)); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:46:27 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:46:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:46:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:46:27 final String savedName = sent.getImageName().getValue().toString(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:46:27 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:46:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:46:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:46:27 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:46:27 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 RoiResult r = svc.findByImage(image.getId().getValue(), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:46:27 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:46:27 table = svc.getTable(f.getId().getValue()); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 RoiResult r = svc.findByImage(image.getId().getValue(), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:46:27 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:46:27 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:46:27 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 01:46:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:46:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:46:27 svc.getShapeStatsRestricted( 01:46:27 ^ 01:46:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:46:27 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:46:27 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:46:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:46:28 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:46:28 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:46:28 request.typesToIgnore = Collections.singletonList("Annotation"); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:46:28 request.typesToIgnore = Collections.singletonList("Annotation"); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:46:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:46:28 p2.setRelatedTo(p1); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:46:28 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:46:28 pixels1.setRelatedTo(pixels2); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:46:28 Pixels pixels = pixels1.getRelatedTo(); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:46:28 Assert.assertNull(pixels1.getRelatedTo()); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:46:28 pixels1.setRelatedTo(pixels2); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:46:28 Pixels pixels = pixels1.getRelatedTo(); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:46:28 Assert.assertNull(pixels1.getRelatedTo()); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:28 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:46:28 ^ 01:46:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:46:28 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:46:28 ^ 01:46:28 Note: Some input files use unchecked or unsafe operations. 01:46:28 Note: Recompile with -Xlint:unchecked for details. 01:46:28 88 warnings 01:46:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1904611958.tmp 01:46:28 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:46:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:46:28 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-548-4b631c68af-ice36-b367 :: integration :: Mon Mar 31 01:46:20 UTC 2025 01:46:28 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:46:28 :: publishing :: omero#OmeroJava-test 01:46:28 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-4b631c68af-ice36-b367.jar 01:46:28 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-4b631c68af-ice36-b367.xml 01:46:28 01:46:28 build-eclipse: 01:46:28 No sub-builds to iterate on 01:46:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:46:29 01:46:29 retrieve: 01:46:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:46:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:46:31 01:46:31 prepare: 01:46:31 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:46:32 01:46:32 release-clients: 01:46:32 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-4b631c68af-ice36-b367.zip 01:46:39 01:46:39 release-zip: 01:46:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-4b631c68af-ice36-b367.zip 01:46:53 01:46:53 BUILD SUCCESSFUL 01:46:53 Total time: 57 seconds 01:46:53 ++ '[' -d .git ']' 01:46:53 ++ python3 ./build.py release-src 01:46:53 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:46:53 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:46:54 01:46:54 release-src-git: 01:46:54 Releasing openmicroscopy-5.6.3-548-4b631c68af-ice36-b367 01:46:55 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-4b631c68af-ice36-b367.zip 01:46:55 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-4b631c68af-ice36-b367-base.zip 01:46:56 01:46:56 BUILD SUCCESSFUL 01:46:56 Total time: 3 seconds 01:46:56 ++ echo BUILD_NUMBER=367 01:46:56 ++ echo OMERO_BRANCH=merge_ci 01:46:56 ++ git_info 01:46:56 +++ git rev-parse HEAD 01:46:56 ++ HEAD=4b631c68af2f687ec7644775e80f857b96164f26 01:46:56 ++ git log --max-count=1 4b631c68af2f687ec7644775e80f857b96164f26 01:46:56 ++ env 01:46:56 ++ sort 01:46:56 Archiving artifacts 01:47:25 Finished: SUCCESS